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Pull requests: nf-core/tools

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Pull requests list

Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller • Draft
4 tasks
3.4.0
@edmundmiller
2
template - adding new multiqc file llms-full.txt to nftignore file
#3675 opened Jul 10, 2025 by maxulysse Loading…
4 tasks
3
don't read param expressions with spaces as params
#3674 opened Jul 10, 2025 by mirpedrol Loading…
6
Update nf-test.yml
#3673 opened Jul 9, 2025 by maxulysse Loading…
4 tasks
6
Update dependency textual to v3.7.0
#3662 opened Jul 8, 2025 by renovate bot Loading…
1 task
2
Add autocompletion for modules / subworkflows and pipeline
#3660 opened Jul 8, 2025 by LouisLeNezet Loading…
3 of 4 tasks
14
Fix #3655: Allow dots (.), hyphens (-), and underscores (_) in GitHub usernames
#3658 opened Jul 6, 2025 by Nisarg908 Loading…
4 tasks done
11
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
10
WIP: Refactor pipeline downloads command download nf-core download WIP Work in progress
#3634 opened Jun 23, 2025 by ErikDanielsson • Draft
1 of 6 tasks
@ErikDanielsson
44
Support modules with exec: blocks
#3633 opened Jun 20, 2025 by muffato Loading…
1 of 4 tasks
1
Add .nf-test folder to prettierignore list
#3625 opened Jun 17, 2025 by jonasscheid Loading…
4 tasks
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
feat: nf-core modules bump-version supports specifying the toolkit
#3608 opened Jun 5, 2025 by nh13 Loading…
4 tasks
18
Download pipelines with authenticated GH API calls
#3607 opened Jun 5, 2025 by jpfeuffer Loading…
1 of 4 tasks
3
Refactor module lint tests awaiting-feedback
#3592 opened May 30, 2025 by edmundmiller • Draft
4 tasks
3.5.0
@edmundmiller
3
Update conda env sorting
#3591 opened May 30, 2025 by edmundmiller Loading…
4 tasks
3.5.0
1
@edmundmiller
14
Issues/3466 Move away from Gitpod
#3569 opened May 14, 2025 by JulianFlesch • Draft
2 of 4 tasks
3.5.0
39
Add docker downloads
#3517 opened Mar 26, 2025 by nikhil • Draft
4 tasks
4
Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
42
Move WorkflowRepo class into seperate file, since it will be shared b…
#3506 opened Mar 24, 2025 by MatthiasZepper • Draft
1 of 4 tasks
8
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.5.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
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