Create pre-commit hooks #3141
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Create pre-commit hooks #3141
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I think this should be in the pipeline template, no? |
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They could be in the pipeline template, but I just made a seperate hook that just works for the pipeline and added that to the template. Might want to look at the stages options. I'm thinking |
edmundmiller
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Co-authored-by: mashehu <mashehu@users.noreply.github.com>
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edmundmiller
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* ci: Fix linting getting skipped * ci: Add list-files json * ci: Why do we need a Docker container again? * ci: Can't use a script if it doesn't exist yet Co-authored-by: adamrtalbot <adamrtalbot@users.noreply.github.com> * ci: Skip outputs if they're empty * style: Run lsp on fastqc * ci: Use files to skip extra steps * ci(lint): Get the module name nf-core/tools#3141 * ci: Add what shell to run on * ci: Clean up the names in the filter step * ci: Add hack to only lint the real changes * ci: Add more to debug step * ci(lint): Get fancy with map * ci: One more time * ci: Maybe? * ci: results => result * ci: Death by a thousand s's * ci: Use Set * ci: Use one at a time * ci(gpu): Update step name * ci: Remove clean workspace after run * ci: Why does that break things? * Revert "style: Run lsp on fastqc" This reverts commit da64fce. --------- Co-authored-by: adamrtalbot <adamrtalbot@users.noreply.github.com>
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files☔ View full report in Codecov by Sentry. |
mashehu
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🧹 spring cleaning message 🌷 What is the status of this PR? |
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Adds pre-commit hooks config for the repo.
Blocked by #3140 currently. Docs if anyone has any ideas https://pre-commit.com/#new-hooks