dev > main for 3.3.0 release #3589
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Refactor adding EDAM ontologies and allowing detect more patterns (e.g., versions.yml)
Fix indentation in included_configs API docs
Co-authored-by: Matthias Zepper <github@mail.matthias-zepper.de>
…for easier testing
* chore(deps): update python:3.12-slim docker digest to fd95fa2 * [automated] Update CHANGELOG.md --------- Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> Co-authored-by: nf-core-bot <core@nf-co.re> Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Linting: add linting of nf-test files content
Bump version to 3.3.0
…3595) Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
mashehu
reviewed
Jun 2, 2025
mashehu
reviewed
Jun 2, 2025
Comment on lines
+19
to
+25
| exclude: | | ||
| (?x)^( | ||
| .*\.snap$| | ||
| nf_core/pipeline-template/subworkflows/.*| | ||
| nf_core/pipeline-template/modules/.*| | ||
| tests/pipelines/__snapshots__/.* | ||
| )$ |
There was a problem hiding this comment.
Suggested change
| exclude: | | |
| (?x)^( | |
| .*\.snap$| | |
| nf_core/pipeline-template/subworkflows/.*| | |
| nf_core/pipeline-template/modules/.*| | |
| tests/pipelines/__snapshots__/.* | |
| )$ | |
| exclude: | | |
| (?x)^( | |
| .*\.snap$| | |
| nf_core/pipeline-template/(subworkflows|modules)/.*| | |
| tests/pipelines/__snapshots__/.* | |
| )$ |
would be a bit more compact.
Remove resourceLimits from nf-test nextflow.config file and use profile instead
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
mashehu
approved these changes
Jun 2, 2025
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Wait until 02/06/2025 for merging!