`dev` -> `master` for v1.14 release #1066

ewels · 2021-05-10T17:16:43Z

dev -> master for v1.14 release

Minor tweaks

Modules lint - exit code 1 if we have failures

Increased test coverage

update module commands with new format

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

Adjust linting

fixed template for "modules create"

Interactive prompts for 'download' and 'launch'

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>

Module install folder name based on source repo name

Quick start nf version

KevinMenden

Alright this gets the go from my side 🚀
Looking all good to me 👍

CHANGELOG.md

nf_core/lint/actions_schema_validation.py

nf_core/pipeline-template/README.md

tools.Dockerfile

maxulysse

I approve as it is.
I think there is some tiny typos.
One inconsistency between Nextflow version that should be the same.
And I think we can improve the tools.Dockerfile, but that can be done in the next release

tools.Dockerfile

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>

@maxulysse

Fix review comments from @maxulysse in #1066

drpatelh and others added 30 commits April 7, 2021 16:29

Merge pull request #986 from ewels/minor-tweaks

a3214aa

Minor tweaks

Merge branch 'dev' into update-template

4d9a9e3

fix markdownlint

dbee5f0

Added test for 'files_unchanged.py'

58ed2bf

Added test for querying PyPI api

982cc9f

fix name for pytest_software.yml

7d23409

Test cases for working pipeline and a few failing examples

9f9312f

black

8130417

Modules lint - exit code 1 if we have failures

0a29cb5

Merge pull request #995 from ewels/module-lint-exit-1

77f159f

Modules lint - exit code 1 if we have failures

Merge pull request #994 from ErikDanielsson/tests

84893b1

Increased test coverage

Added Dockerfile for nf-core/tools

7b7d882

black

e89164a

Rewrote tools Dockerfile with Python base image

7838508

Dockerhub push gh actions for tools

9b97ffe

fixed template for "modules create"

02c3f22

Added checks for custom configs

91e2074

add new functions.nf file to modules template

64ed98d

added test for pytest_software.yml entry

7b3e8b9

changelog

e580b00

Merge pull request #983 from KevinMenden/update-template

35d7685

update module commands with new format

add template adjustment from @drpatel

4eaedc8

Merge branch 'dev' into adjust-linting

83b4ab5

Update nf_core/module-template/software/main.nf

302d765

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

Merge pull request #998 from KevinMenden/adjust-linting

45cbeb1

Adjust linting

Merge pull request #997 from KevinMenden/fix-test-file-creation

900e092

fixed template for "modules create"

Fix modules linting for publish_by_meta

ead3b4c

Update CHANGELOG

f23143f

Fix strings

3010b8b

Added additional lint tests and reformatted with black

eb863e4

ewels and others added 14 commits May 10, 2021 14:36

Bump version - refactor matching into loop

9b4f716

Attempt to fix without testing locally

ce1c2c9

fix readme regex

2f7be42

updated changelog

ced197d

markdown

2fa0265

Merge pull request #1027 from ErikDanielsson/prompts

7735845

Interactive prompts for 'download' and 'launch'

added regex example comments

a82eaec

remove question marks

14e2e11

Update nf_core/bump_version.py

91962e1

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>

escape dot

26b4d61

Merge pull request #1042 from marc-jones/modules-install-folder

00c93cf

Module install folder name based on source repo name

Merge pull request #1064 from KevinMenden/quick-start-nf-version

3373401

Quick start nf version

Bump to v1.14, reorganise changelog

cad3981

Merge pull request #1065 from ewels/prep-1.14-release

3a5c6e0

ewels requested a review from KevinMenden May 10, 2021 17:17

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KevinMenden approved these changes May 11, 2021

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