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Linting of patched subworkflows #3755
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mashehu
approved these changes
Sep 30, 2025
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nice work!
mashehu
approved these changes
Sep 30, 2025
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Hello,
One of our pipelines had a faulty subworkflow patch and I investigated why it wasn't reported by
nf-core pipelines lint
.The main problem is that the
LookupError
was ignored. I don't know what "This error is already reported by subworkflow_patch" is referring to. It certainly wasn't working ! So here I propose to directly log an error.The other problem is I think unrelated, but I found that while debugging. As far as I can tell,
self.meta
cannot beFalse
. It can beNone
, though.PR checklist
CHANGELOG.md
is updateddocs
is updated