nf-core · mirpedrol · Aug 25, 2025 · Aug 22, 2025 · Aug 22, 2025 · Aug 22, 2025
diff --git a/.github/snapshots/adaptivecard.nf.test.snap b/.github/snapshots/adaptivecard.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/changelog.nf.test.snap b/.github/snapshots/changelog.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/ci.nf.test.snap b/.github/snapshots/ci.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/citations.nf.test.snap b/.github/snapshots/citations.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/code_linters.nf.test.snap b/.github/snapshots/code_linters.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/codespaces.nf.test.snap b/.github/snapshots/codespaces.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/default.nf.test.snap b/.github/snapshots/default.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/documentation.nf.test.snap b/.github/snapshots/documentation.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/email.nf.test.snap b/.github/snapshots/email.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/fastqc.nf.test.snap b/.github/snapshots/fastqc.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            1,
             {
                 "Workflow": {
                     "my-prefix/testpipeline": "v1.0.0dev"

diff --git a/.github/snapshots/github_badges.nf.test.snap b/.github/snapshots/github_badges.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/gitpod.nf.test.snap b/.github/snapshots/gitpod.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/gpu.nf.test.snap b/.github/snapshots/gpu.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/igenomes.nf.test.snap b/.github/snapshots/igenomes.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/license.nf.test.snap b/.github/snapshots/license.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/modules.nf.test.snap b/.github/snapshots/modules.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            0,
             null,
             [
                 "pipeline_info"

diff --git a/.github/snapshots/multiqc.nf.test.snap b/.github/snapshots/multiqc.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            3,
             null,
             [
                 "fastqc",

diff --git a/.github/snapshots/nf_core_configs.nf.test.snap b/.github/snapshots/nf_core_configs.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/nf_schema.nf.test.snap b/.github/snapshots/nf_schema.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/rocrate.nf.test.snap b/.github/snapshots/rocrate.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/seqera_platform.nf.test.snap b/.github/snapshots/seqera_platform.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/slackreport.nf.test.snap b/.github/snapshots/slackreport.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/.github/snapshots/vscode.nf.test.snap b/.github/snapshots/vscode.nf.test.snap
@@ -1,7 +1,6 @@
 {
     "-profile test": {
         "content": [
-            4,
             {
                 "FASTQC": {
                     "fastqc": "0.12.1"

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -23,6 +23,7 @@
 - Update python:3.13-slim Docker digest to 4c2cf99 ([#3700](https://github.com/nf-core/tools/pull/3700))
 - Validation of meta.yaml in cross-org repos ([#3680](https://github.com/nf-core/tools/pull/3680))
 - Replace arm profile with arm64 and emulate_amd64 profiles ([#3689](https://github.com/nf-core/tools/pull/3689))
+- Remove workflow.trace from nf-test snapshot ([#3721](https://github.com/nf-core/tools/pull/3721))
 
 ## [v3.3.2 - Tungsten Tamarin Patch 2](https://github.com/nf-core/tools/releases/tag/3.3.2) - [2025-07-08]
 

diff --git a/nf_core/pipeline-template/tests/default.nf.test b/nf_core/pipeline-template/tests/default.nf.test
@@ -20,8 +20,6 @@ nextflow_pipeline {
             assertAll(
                 { assert workflow.success},
                 { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/{% if is_nfcore %}nf_core_{% endif %}{{ short_name }}_software_mqc_versions.yml"),
                     // All stable path name, with a relative path

diff --git a/requirements-dev.txt b/requirements-dev.txt
@@ -11,13 +11,10 @@ types-PyYAML
 types-requests
 types-jsonschema
 types-Markdown
-types-PyYAML
-types-requests
 types-setuptools
 typing_extensions >=4.0.0
 pytest-asyncio
 pytest-textual-snapshot==1.1.0
 pytest-workflow>=2.0.0
 pytest-xdist>=3.7.0
 pytest>=8.0.0
-ruff