+
Skip to content

bump version to 3.3.2 #3666

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 4 commits into from
Jul 8, 2025
Merged

bump version to 3.3.2 #3666

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
668ddc2
bumpt version to 3.4.0
mashehu Jul 8, 2025
a54cece
bump to 3.3.2 instead
mashehu Jul 8, 2025
d841f1c
Merge branch 'dev' of github.com:nf-core/tools into bump-to-3.4.0
mashehu Jul 8, 2025
ab3c3ce
clean up changelog
mashehu Jul 8, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .gitpod.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
image: nfcore/gitpod:dev
image: nfcore/gitpod:latest
tasks:
- name: install current state of nf-core/tools and setup pre-commit
command: |
Expand Down
20 changes: 10 additions & 10 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# nf-core/tools: Changelog

## v3.3.2dev
## [v3.3.2dev - Tungsten Tamarin Patch 2](https://github.com/nf-core/tools/releases/tag/3.3.2) - [2025-07-08]

### Template

Expand All @@ -13,6 +13,8 @@
- Fix link to nf-test GHA in README.md ([#3630](https://github.com/nf-core/tools/pull/3630))
- Add accelerator directive for GPU-enabled processes ([#3632](https://github.com/nf-core/tools/pull/3632))
- Update dependency prettier to v3.6.0 ([#3641](https://github.com/nf-core/tools/pull/3641)) and 3.6.2 ([#3646](https://github.com/nf-core/tools/pull/3646))
- Add opt-in feature `gpu` ([#3562](https://github.com/nf-core/tools/pull/3562))
- Update zentered/bluesky-post-action action to v0.3.0 ([#3626](https://github.com/nf-core/tools/pull/3626))

### Linting

Expand All @@ -28,25 +30,24 @@

### General

- Add conda cache dir ([#3610](https://github.com/nf-core/tools/pull/3610))
- update id of ruff hook in pre-commit config ([#3621](https://github.com/nf-core/tools/pull/3621))
- Drop python 3.8, add tests with python 3.13 ([#3538](https://github.com/nf-core/tools/pull/3538))
- Fixes a bug with the test-datasets subcommand [#3617](https://github.com/nf-core/tools/issues/3617)
- Update pre-commit hook pre-commit/mirrors-mypy to v1.16.1 ([#3624](https://github.com/nf-core/tools/pull/3624))
- Pin python Docker tag to f2fdaec ([#3623](https://github.com/nf-core/tools/pull/3623))
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.0 ([#3627](https://github.com/nf-core/tools/pull/3627))
- Update zentered/bluesky-post-action action to v0.3.0 ([#3626](https://github.com/nf-core/tools/pull/3626))
- Update dependency textual to v3.5.0 ([#3636](https://github.com/nf-core/tools/pull/3636))
- Make changelog bot push to correct remote ([#3638](https://github.com/nf-core/tools/pull/3638))
- Give unique button ids to help buttons in create app ([#3645](https://github.com/nf-core/tools/pull/3645))
- Parallelize pytest runs and speed up coverage step ([#3635](https://github.com/nf-core/tools/pull/3635))
- Update gitpod/workspace-base Docker digest to 77021d8 ([#3649](https://github.com/nf-core/tools/pull/3649))
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.1 ([#3648](https://github.com/nf-core/tools/pull/3648))
- Update error message for rocrate_readme_sync ([#3652](https://github.com/nf-core/tools/pull/3652))
- Update `nf-core modules info` command after `meta.yml` restructuring ([#3659](https://github.com/nf-core/tools/pull/3659))
- Enable parsing of multi-line config values ([#3629](https://github.com/nf-core/tools/pull/3629))

#### Version updates

- Drop python 3.8, add tests with python 3.13 ([#3538](https://github.com/nf-core/tools/pull/3538))
- Update python:3.13-slim Docker digest to 6544e0e ([#3663](https://github.com/nf-core/tools/pull/3663))
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.2 ([#3661](https://github.com/nf-core/tools/pull/3661))
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.2 ([#3627](https://github.com/nf-core/tools/pull/3627),[#3648](https://github.com/nf-core/tools/pull/3648), [#3661](https://github.com/nf-core/tools/pull/3661))
- Update dependency textual to v3.5.0 ([#3636](https://github.com/nf-core/tools/pull/3636))
- Update pre-commit hook pre-commit/mirrors-mypy to v1.16.1 ([#3624](https://github.com/nf-core/tools/pull/3624))

## [v3.3.1 - Tungsten Tamarin Patch](https://github.com/nf-core/tools/releases/tag/3.3.1) - [2025-06-02]

Expand Down Expand Up @@ -117,7 +118,6 @@ We also enabled to install subworkflows with modules from different remotes.
- Handling issue with arity #3530 ([#3539](https://github.com/nf-core/tools/pull/3539))
- GitHub action for nightly tests with Nextflow from source ([#3553](https://github.com/nf-core/tools/pull/3553))
- Update CI to test template pipelines with nf-test ([#3559](https://github.com/nf-core/tools/pull/3559))
- Add opt-in feature `gpu` ([#3562](https://github.com/nf-core/tools/pull/3562))
- Use secret for notification email on nextflow nightly builds ([#3576](https://github.com/nf-core/tools/pull/3576))
- Use pdiff from setup-nf-test ([#3578](https://github.com/nf-core/tools/pull/3578))

Expand Down
2 changes: 1 addition & 1 deletion setup.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

from setuptools import find_packages, setup

version = "3.3.2dev"
version = "3.3.2"

with open("README.md") as f:
readme = f.read()
Expand Down
点击 这是indexloc提供的php浏览器服务，不要输入任何密码和下载