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write github.run_id on pipeline template #3637

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Merged
merged 3 commits into from
Jun 23, 2025
Merged

write github.run_id on pipeline template #3637

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d980dff
write github.run_id on pipeline template
mirpedrol Jun 23, 2025
a40d921
[automated] Update CHANGELOG.md
nf-core-bot Jun 23, 2025
3d545d1
Merge branch 'dev' into fix-gha-paths
mirpedrol Jun 23, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@

- Avoid overriding `NFT_DIFF` and `NFT_DIFF_ARGS` in `nf-test` action ([#3606](https://github.com/nf-core/tools/pull/3606)) and ([#3619](https://github.com/nf-core/tools/pull/3619))
- fix nf-test scope to ignore nf-core module/swf tests ([#3609](https://github.com/nf-core/tools/pull/3609))
- write github.run_id on pipeline template ([#3637](https://github.com/nf-core/tools/pull/3637))
- Bump nf-schema to `2.4.2` ([#3533](https://github.com/nf-core/tools/pull/3533))
- Bump the minimal Nextflow version to `24.10.8` ([#3533](https://github.com/nf-core/tools/pull/3533))
- CI - Only trigger nf-test action on pull_request ([#3628](https://github.com/nf-core/tools/pull/3628))
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6 changes: 3 additions & 3 deletions nf_core/pipeline-template/.github/workflows/nf-test.yml
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Expand Up @@ -28,7 +28,7 @@ jobs:
nf-test-changes:
name: nf-test-changes
runs-on: #{% endraw %}{% if is_nfcore %} use self-hosted runners
- runs-on=${{ github.run_id }}-nf-test-changes
- runs-on={% raw %}${{ github.run_id }}{% endraw %}-nf-test-changes
- runner=4cpu-linux-x64{% else %} use GitHub runners
- "ubuntu-latest"{% endif %}{% raw %}
outputs:
Expand Down Expand Up @@ -63,7 +63,7 @@ jobs:
needs: [nf-test-changes]
if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
runs-on: #{% endraw %}{% if is_nfcore %} use self-hosted runners
- runs-on=${{ github.run_id }}-nf-test
- runs-on={% raw %}${{ github.run_id }}{% endraw %}-nf-test
- runner=4cpu-linux-x64{% else %} use GitHub runners
- "ubuntu-latest"{% endif %}{% raw %}
strategy:
Expand Down Expand Up @@ -103,7 +103,7 @@ jobs:
needs: [nf-test]
if: always()
runs-on: {% endraw %}#{% if is_nfcore %} use self-hosted runners
- runs-on=${{ github.run_id }}-confirm-pass
- runs-on={% raw %}${{ github.run_id }}{% endraw %}-confirm-pass
- runner=2cpu-linux-x64{% else %} use GitHub runners
- "ubuntu-latest"{% endif %}{% raw %}
steps:
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