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Use yaml specific comment symbols #3601

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Merged
merged 6 commits into from
Jun 2, 2025
Merged

Use yaml specific comment symbols #3601

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d65784a
Merge pull request #3589 from nf-core/dev
mirpedrol Jun 2, 2025
14a3120
use yaml specific comment symbols
mashehu Jun 2, 2025
129858b
update changelog and bump version
mashehu Jun 2, 2025
286b6fe
Update nf_core/pipeline-template/.github/workflows/nf-test.yml
mashehu Jun 2, 2025
ecbd5f5
Update CHANGELOG.md
mashehu Jun 2, 2025
c634d1b
Apply suggestions from code review
mashehu Jun 2, 2025
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1 change: 1 addition & 0 deletions .prettierignore
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ nf_core/pipeline-template/nextflow_schema.json
nf_core/pipeline-template/modules.json
nf_core/pipeline-template/tower.yml
nf_core/pipeline-template/.github/ISSUE_TEMPLATE/bug_report.yml
nf_core/pipeline-template/.github/workflows/nf-test.yml
tests/data/pipeline_create_template_skip.yml
# don't run on things handled by ruff
*.py
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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@@ -1,5 +1,11 @@
# nf-core/tools: Changelog

## [v3.3.1 - Tungsten Tamarin Patch](https://github.com/nf-core/tools/releases/tag/3.3.1) - [2025-06-02]

### Template

- Use correct comment symbol in `nf-test.yml` ([#3601](https://github.com/nf-core/tools/pull/3601))

## [v3.3.0 - Tungsten Tamarin](https://github.com/nf-core/tools/releases/tag/3.3.0) - [2025-06-02]

**Highlights**
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12 changes: 6 additions & 6 deletions nf_core/pipeline-template/.github/workflows/nf-test.yml
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Expand Up @@ -34,9 +34,9 @@ env:
jobs:
nf-test-changes:
name: nf-test-changes
runs-on: // {% endraw %}{% if is_nfcore %}use self-hosted runners
runs-on: #{% endraw %}{% if is_nfcore %} use self-hosted runners
- runs-on=${{ github.run_id }}-nf-test-changes
- runner=4cpu-linux-x64{% else %}use GitHub runners
- runner=4cpu-linux-x64{% else %} use GitHub runners
- "ubuntu-latest"{% endif %}{% raw %}
outputs:
shard: ${{ steps.set-shards.outputs.shard }}
Expand Down Expand Up @@ -69,9 +69,9 @@ jobs:
name: "${{ matrix.profile }} | ${{ matrix.NXF_VER }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}"
needs: [nf-test-changes]
if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
runs-on: // {% endraw %}{% if is_nfcore %}use self-hosted runners
runs-on: #{% endraw %}{% if is_nfcore %} use self-hosted runners
- runs-on=${{ github.run_id }}-nf-test
- runner=4cpu-linux-x64{% else %}use GitHub runners
- runner=4cpu-linux-x64{% else %} use GitHub runners
- "ubuntu-latest"{% endif %}{% raw %}
strategy:
fail-fast: false
Expand Down Expand Up @@ -111,9 +111,9 @@ jobs:
confirm-pass:
needs: [nf-test]
if: always()
runs-on: // {% endraw %}{% if is_nfcore %}use self-hosted runners
runs-on: {% endraw %}#{% if is_nfcore %} use self-hosted runners
- runs-on=${{ github.run_id }}-confirm-pass
- runner=2cpu-linux-x64{% else %}use GitHub runners
- runner=2cpu-linux-x64{% else %} use GitHub runners
- "ubuntu-latest"{% endif %}{% raw %}
steps:
- name: One or more tests failed
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -2,7 +2,7 @@

from setuptools import find_packages, setup

version = "3.3.0"
version = "3.3.1"

with open("README.md") as f:
readme = f.read()
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