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Make jobs automatically resubmit for exit code 175 #3564

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May 21, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@
- run nf-test tests on runsOn runners ([#3525](https://github.com/nf-core/tools/pull/3525))
- Include the centralized nf-core configs also in offline mode, if a local copy is available. ([#3491](https://github.com/nf-core/tools/pull/3491))
- downgrade nf-schema to fix CI tests ([#3544](https://github.com/nf-core/tools/pull/3544))
- Make jobs automatically resubmit for exit code 175 ([#3564](https://github.com/nf-core/tools/pull/3564))
- bump nf-schema back to 2.3.0 ([#3577](https://github.com/nf-core/tools/pull/3577))

### Linting
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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/conf/base.config
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ process {
memory = { 6.GB * task.attempt }
time = { 4.h * task.attempt }

errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
errorStrategy = { task.exitStatus in ((130..145) + 104 + 175) ? 'retry' : 'finish' }
maxRetries = 1
maxErrors = '-1'

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4 changes: 3 additions & 1 deletion nf_core/pipeline-template/nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -83,7 +83,9 @@ process {
memory = { 6.GB * task.attempt }
time = { 4.h * task.attempt }

errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
// 175 signals that the Pipeline had an unrecoverable error while
// restoring a Snapshot via Fusion Snapshots.
errorStrategy = { task.exitStatus in ((130..145) + 104 + 175) ? 'retry' : 'finish' }
maxRetries = 1
maxErrors = '-1'
}
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