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chore(deps): update actions/setup-python digest to 8d9ed9a #3518

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Merged
merged 3 commits into from
Apr 3, 2025
Merged

chore(deps): update actions/setup-python digest to 8d9ed9a #3518

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6f93c73
Update actions/setup-python digest to 8d9ed9a
renovate[bot] Mar 26, 2025
06236e5
[automated] Update CHANGELOG.md
nf-core-bot Mar 27, 2025
f6fe00a
Merge branch 'dev' into renovate/github-actions
mashehu Apr 3, 2025
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4 changes: 2 additions & 2 deletions .github/workflows/changelog.yml
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Expand Up @@ -36,7 +36,7 @@ jobs:
fi
gh pr checkout $PR_NUMBER

- uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
- uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

Expand Down Expand Up @@ -65,7 +65,7 @@ jobs:
echo "File changed: ${{ env.changed }}"

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"
cache: "pip"
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2 changes: 1 addition & 1 deletion .github/workflows/create-lint-wf.yml
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Expand Up @@ -53,7 +53,7 @@ jobs:

# Set up nf-core/tools
- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"
cache: pip
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2 changes: 1 addition & 1 deletion .github/workflows/create-test-lint-wf-template.yml
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Expand Up @@ -84,7 +84,7 @@ jobs:
name: Check out source-code repository

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

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2 changes: 1 addition & 1 deletion .github/workflows/create-test-wf.yml
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Expand Up @@ -52,7 +52,7 @@ jobs:
name: Check out source-code repository

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

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2 changes: 1 addition & 1 deletion .github/workflows/deploy-pypi.yml
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Expand Up @@ -17,7 +17,7 @@ jobs:
name: Check out source-code repository

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

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2 changes: 1 addition & 1 deletion .github/workflows/fix-linting.yml
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Expand Up @@ -32,7 +32,7 @@ jobs:
GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }}

# Install and run pre-commit
- uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
- uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

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2 changes: 1 addition & 1 deletion .github/workflows/lint-code.yml
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Expand Up @@ -23,7 +23,7 @@ jobs:
- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"
cache: "pip"
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4 changes: 2 additions & 2 deletions .github/workflows/pytest.yml
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Expand Up @@ -93,7 +93,7 @@ jobs:
name: Check out source-code repository

- name: Set up Python ${{ needs.setup.outputs.python-version }}
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: ${{ needs.setup.outputs.python-version }}
cache: "pip"
Expand Down Expand Up @@ -176,7 +176,7 @@ jobs:

- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
env:
AGENT_TOOLSDIRECTORY: /opt/actions-runner/_work/tools/tools/
with:
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2 changes: 1 addition & 1 deletion .github/workflows/sync.yml
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Expand Up @@ -79,7 +79,7 @@ jobs:
fetch-depth: "0"

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

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2 changes: 1 addition & 1 deletion .github/workflows/update-textual-snapshots.yml
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Expand Up @@ -33,7 +33,7 @@ jobs:

# Install dependencies and run pytest
- name: Set up Python
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"
cache: "pip"
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -52,6 +52,7 @@
- Ontology fix comment yaml ([#3502](https://github.com/nf-core/tools/pull/3502))
- Bugfix - add back logo to the README ([#3504](https://github.com/nf-core/tools/pull/3504))
- Update dead link ([#3505](https://github.com/nf-core/tools/pull/3505))
- chore(deps): update actions/setup-python digest to 8d9ed9a ([#3518](https://github.com/nf-core/tools/pull/3518))
- Changing retrieval of file extension from EDAM ([#3512](https://github.com/nf-core/tools/pull/3512))
- Refactor adding EDAM ontologies and allowing detect more patterns (e.g., versions.yml) ([#3519](https://github.com/nf-core/tools/pull/3519))
- Fix indentation in included_configs API docs ([#3523](https://github.com/nf-core/tools/pull/3523))
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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/actions/nf-test/action.yml
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Expand Up @@ -25,7 +25,7 @@ runs:
version: "{% raw %}${{ env.NXF_VERSION }}"

- name: Set up Python
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.11"

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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/download_pipeline.yml
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Expand Up @@ -44,7 +44,7 @@ jobs:
- name: Disk space cleanup
uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

- uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
- uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"
architecture: "x64"
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/fix-linting.yml
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Expand Up @@ -32,7 +32,7 @@ jobs:
GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }}

# Install and run pre-commit
- uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
- uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

Expand Down
4 changes: 2 additions & 2 deletions nf_core/pipeline-template/.github/workflows/linting.yml
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Expand Up @@ -14,7 +14,7 @@ jobs:
- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

- name: Set up Python 3.12
uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"

Expand All @@ -33,7 +33,7 @@ jobs:
- name: Install Nextflow
uses: nf-core/setup-nextflow@v2

- uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5
- uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5
with:
python-version: "3.13"
architecture: "x64"
Expand Down
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