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Fix pipeline linting nf-core component behaviour #3480

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Merged
merged 17 commits into from
Mar 6, 2025
Merged

Fix pipeline linting nf-core component behaviour #3480

merged 17 commits into from
Mar 6, 2025

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LouisLeNezet
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@LouisLeNezet LouisLeNezet commented Mar 5, 2025 •
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PR checklist

This should fix #3478

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

@LouisLeNezet LouisLeNezet changed the title Fix pipelin linting nf-core component behaviour Fix pipeline linting nf-core component behaviour Mar 5, 2025
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codecov bot commented Mar 5, 2025 •
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 76.64%. Comparing base (67146de) to head (3365067).
Report is 18 commits behind head on dev.

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@LouisLeNezet LouisLeNezet linked an issue Mar 5, 2025 that may be closed by this pull request
Lint modules and sbwf with nf-core pipelines lint by default #3478
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This should be good now and we can see all the warnings in the linting that we didn't see before.

@LouisLeNezet LouisLeNezet requested a review from mirpedrol March 5, 2025 23:35
mirpedrol
mirpedrol reviewed Mar 6, 2025
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mirpedrol approved these changes Mar 6, 2025
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LGTM, thanks for the fix!

@LouisLeNezet LouisLeNezet merged commit 8451416 into nf-core:dev Mar 6, 2025
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@LouisLeNezet LouisLeNezet deleted the lint branch July 7, 2025 07:06
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@mirpedrol mirpedrol mirpedrol approved these changes

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Lint modules and sbwf with nf-core pipelines lint by default

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@LouisLeNezet @mirpedrol
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