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All modified and coverable lines are covered by tests ✅

Project coverage is 76.16%. Comparing base (570ae2b) to head (737b515).
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Great! I think, it was by now already manually incorporated to the development version of the Taxprofiler pipeline, so that also suggests it does now work.

Also tested with the nf-core/testpipeline https://github.com/nf-core/testpipeline/actions/runs/12744809455/job/35517501873?pr=101

Did you by chance also test the conditional part? Because I have never created a pipeline with a cherry-picked template, and there is this {% if test_config %} clause in there that I do not understand at all. I vaguely recall you one mentioned that it allows customizing the template in the creation process, but I have not tested the non-default action. Would that then be only the upper part without everying enclosed between {% if test_config %} and {% endif %}?

Exactly, it won't contain anything that is between {% if test_config %} and {% endif %}. I haven't tested that case, but it should be ok as it will only test the first part of the action, which is passing on the tests pe made