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Commits on Oct 16, 2025

• Update nf_core/pipeline-template/README.md

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Commits on Oct 15, 2025

• Update CHANGELOG.md

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• Add Path version to semantic version name

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• Bump version

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• Change setup.sh script to be executable

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• Add changelog entry

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• Fix: Add updated devcontainer config for template

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Commits on Oct 14, 2025

• feat: Add codespaces badge to template README

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Commits on Oct 9, 2025

• Merge pull request #3752 from JulianFlesch/issues/3735-check-docker

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Commits on Oct 8, 2025

• Merge branch 'dev' into issues/3735-check-docker

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• Merge pull request #3750 from JulianFlesch/issues/3729-download-cleanup

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Commits on Oct 7, 2025

• add finally to simplify

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• Remove explicit tempdir cleanup

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• Remove redundant error logging

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• Change to raising a DownloadError

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• Merge branch 'dev' into issues/3735-check-docker

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• Update nf_core/pipelines/download/utils.py

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Commits on Sep 9, 2025

• Add error handling around setup code.

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• Add check for docker daemon by running docker info

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• Add changes

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• Merge branch 'dev' into issues/3729-download-cleanup

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• impr: Add contextmanager for changing into temp direcotry and handling exceptions

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• impr: run nextflow inspect in tempdir

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• Merge pull request #3749 from JulianFlesch/issues/3742-download

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Commits on Sep 8, 2025

• fix: change permission string from hexa to octal. Use temp file name

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• fix: Set 755 file permisson for image files after http download

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• Merging dev changes

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• Merge pull request #3746 from JulianFlesch/impr/devcontainer-resources

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• Fix: temporary files not moved and cleaned up correctly after singularity pull.

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Commits on Sep 5, 2025

• impr: Add hostRequirements to run with 4CPUs and 16GB ram by default (available in free tier)

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Commits on Sep 3, 2025

• Merge pull request #3569 from JulianFlesch/issues/3466-gitpod

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Commits on Sep 1, 2025

• impr: Use more lean base image for final stage.

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• cleanup: remove unused features and update comments

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• impr: Move apptainer install to Dockerfile to improve container size

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• fix typo: remove duplicate line

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