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WO2012001000A1 - Présentation à la surface des spores de molécules bioactives - Google Patents

Présentation à la surface des spores de molécules bioactives Download PDF

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Publication number
WO2012001000A1
WO2012001000A1 PCT/EP2011/060828 EP2011060828W WO2012001000A1 WO 2012001000 A1 WO2012001000 A1 WO 2012001000A1 EP 2011060828 W EP2011060828 W EP 2011060828W WO 2012001000 A1 WO2012001000 A1 WO 2012001000A1
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WO
WIPO (PCT)
Prior art keywords
spore
protein
carrier
dna
animal feed
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PCT/EP2011/060828
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English (en)
Inventor
John B. Perkins
Zoltan Pragai
Ghislain Schyns
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Dsm Ip Assets B.V.
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Filing date
Publication date
Application filed by Dsm Ip Assets B.V. filed Critical Dsm Ip Assets B.V.
Priority to US13/807,804 priority Critical patent/US20130216653A1/en
Priority to EP11729606.1A priority patent/EP2588614A1/fr
Publication of WO2012001000A1 publication Critical patent/WO2012001000A1/fr

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N11/00—Carrier-bound or immobilised enzymes; Carrier-bound or immobilised microbial cells; Preparation thereof
    • C12N11/16—Enzymes or microbial cells immobilised on or in a biological cell
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/32—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Bacillus (G)
    • A—HUMAN NECESSITIES
    • A23—FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23K—FODDER
    • A23K10/00—Animal feeding-stuffs
    • A23K10/10—Animal feeding-stuffs obtained by microbiological or biochemical processes
    • A23K10/16—Addition of microorganisms or extracts thereof, e.g. single-cell proteins, to feeding-stuff compositions
    • A—HUMAN NECESSITIES
    • A23—FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23K—FODDER
    • A23K10/00—Animal feeding-stuffs
    • A23K10/10—Animal feeding-stuffs obtained by microbiological or biochemical processes
    • A23K10/16—Addition of microorganisms or extracts thereof, e.g. single-cell proteins, to feeding-stuff compositions
    • A23K10/18—Addition of microorganisms or extracts thereof, e.g. single-cell proteins, to feeding-stuff compositions of live microorganisms
    • A—HUMAN NECESSITIES
    • A23—FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23K—FODDER
    • A23K20/00—Accessory food factors for animal feeding-stuffs
    • A23K20/10—Organic substances
    • A23K20/189—Enzymes
    • A—HUMAN NECESSITIES
    • A23—FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23K—FODDER
    • A23K50/00—Feeding-stuffs specially adapted for particular animals
    • A23K50/10—Feeding-stuffs specially adapted for particular animals for ruminants
    • A—HUMAN NECESSITIES
    • A23—FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23K—FODDER
    • A23K50/00—Feeding-stuffs specially adapted for particular animals
    • A23K50/70—Feeding-stuffs specially adapted for particular animals for birds
    • A23K50/75—Feeding-stuffs specially adapted for particular animals for birds for poultry
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • C12N15/75—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Bacillus
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N3/00—Spore forming or isolating processes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/16—Hydrolases (3) acting on ester bonds (3.1)

Definitions

  • the present invention relates to the display of bioactive molecules at the surface of spores for both in vitro and in vivo applications.
  • microbial surface display (part of the bio-nanotechnology field) has increasingly become a tool of choice to display peptides or proteins of biotechno logical interest on natural nanostructures for a commercial purpose.
  • Biological applications include the development of bio-adsorbents, the presentation of antigens for vaccines, or the preparation of combinatorial epitope libraries.
  • Surface display requires only the synthesis of a hybrid protein that consists of a passenger protein of commercial interest fused to a carrier protein, which anchors it onto the biological surface (cell wall or membrane).
  • a good carrier protein requires the following characteristics: i) a targeting signal that directs it to the biological surface; ii) a strong anchoring motif; iii) resistance to proteases; and iv) compatibility to foreign sequences to be fused.
  • the carrier protein was chosen amongst surface or membrane proteins, e.g. OmpA for Gram-negative bacteria or the Protein A for Gram-positive bacteria.
  • OmpA for Gram-negative bacteria
  • Protein A for Gram-positive bacteria.
  • the disadvantages of these display systems are that these proteins were not very stable and tended to be inactivated under conditions that are regularly used in biotechnological and chemical processes.
  • spore coat from Bacillus subtilis and other related genera.
  • Bacilli and Clostridia have the ability to undergo a complex differentiation process under nutrient deprivation or hostile conditions. This process, called sporulation, ends with the formation of an extremely resistant structure named the spore.
  • sporulation ends with the formation of an extremely resistant structure named the spore.
  • the spore germinate to re-generate vegetative cells which follow a classical growth and division cyclic pattern.
  • a spore consists of a central compartment, the spore core, which contains a copy of the chromosome.
  • the spore core is surrounded by a thin inner layer membrane of peptidoglycan that creates the germ cell, itself surrounded by a thicker layer of peptidoglycan, called the cortex.
  • a multilayered protein shell, the coat provides unique resistance characteristics.
  • the B. subtilis coat is formed by the
  • the spore coat proteins allow spores to be very resistant to harsh chemicals, desiccation, strong pressure, or high temperatures.
  • An example of B. subtilis spore is disclosed in WO 2005/028556.
  • spores which show synthetic enzymatic activity displayed at the spore surfaces are very limited and refer to the use as diagnostic system or pharmaceutical drug, e.g. vaccine delivery systems.
  • Examples reported are displays of ⁇ -galactosidases, which were fused to part of CotC, CotD, CotE, CotG or InhA (WO 1996/23063; WO 02/46388; WO 2005/028654), and displays of lipases, which were inserted in frame within CotC or fused to part of CotC (WO 02/00232) or displays of carboxymethylcellulases, which were fused to the exosporium protein InhA.
  • the spore surface proteins used so far as carriers for display of bioactive molecules have a molecular weight of at least 12 kDa, such as 12 (CotC) to 65 kDa (CotA).
  • Carrier proteins having such weight/size turned out to be disadvantageous due to different types of interference with either the spore assembly and the spore structure or potentially with the folding of the passenger aimed to be displayed. If using such kind of carriers, there is a high risk of potential multimerization of passengers fused to the carrier, which would lead to display of multimeric bioactive molecules such as e.g. enzymes.
  • the spore structure might be altered by such big carriers fused to the respective passenger.
  • ORFs small open reading frames
  • the encoded small proteins have a molecular weight of less than 12 kDa, which corresponds to about less than 100 amino acids.
  • the 3 ORFs have been identified/isolated from the intergenic regions of Bacillus subtilis or are paralogs of small proteins identified in the intergenic regions of Bacillis subtilis.
  • a "small protein” or “carrier” is a protein displayed on the coat of the forespore and exhibits a molecular weight below about 12 kDa, corresponding to approximately 100 amino acids or less.
  • the present invention is directed to a carrier/small protein and the DNA encoding said carrier used for displaying a bioactive molecule, wherein the carrier has the following properties:
  • spore-forming microorganism preferably selected from Bacilli, Sporolactobacilli and Clostridia, more preferably Bacillus, most preferably B. subtilis, and
  • the carrier is selected from proteins of about 100 amino acids or less, such as between 50 and 100 amino acids, preferably about 50, 60, 70, 80, 90, 100 amino acids.
  • the ORFs are selected from ynzSP ( Figure 1), ydgB ( Figure 7) oxydzH ( Figure 8) coding for small proteins/carriers represented by SEQ ID NO: 10 (YnzSP), SEQ ID NO: 11 (YdgB), and SEQ ID NO: 12 (YdzH).
  • the ynzSP ORF has been identified in the intergenic region in the genome of B. subtilis. Both ydgB and ydzH are paralogs of sequences identified in the intergenic regions of the B. subtilis genome.
  • the present invention is directed to a construct comprising a first DNA encoding the carrier as specified above and a second DNA encoding the bioactive molecule, also referred herein as the "passenger", wherein the carrier-passenger is expressed as a fusion protein.
  • the present invention is directed to a fusion protein comprising (1) a carrier selected from YdgB, YdzH or YnzSP and (2) the passenger, selected from, e.g., proteins, enzymes or bioactive (poly)peptides.
  • a construct as well as the fusion protein for display of bioactive molecules at the spore surface, the genetically modified spore itself as well as a microorganism comprising such a spore is also covered by the present invention.
  • bioactive molecules or passengers to be displayed at the spore surface include but are not limited to proteins, enzymes, bioactive (poly)peptides such as e.g. bacteriocins, epitopes used for vaccination or affinity ligands that could bind the spore to the gut epithelium and anchor a spore which would have other bioactive molecules displayed.
  • bioactive (poly)peptides such as e.g. bacteriocins, epitopes used for vaccination or affinity ligands that could bind the spore to the gut epithelium and anchor a spore which would have other bioactive molecules displayed.
  • Preferred enzymes useful as passengers and fused to one of the carriers mentioned above are any enzymes used in food or feed industry, in particular phytase (EC 3.1.3.8 or 3.1.3.26), xylanase (EC 3.2.1.8), galactanase (EC 3.2.1.89), alpha-galactosidase (EC 3.2.1.22), protease (EC 3.4.), phospholipases, beta-glucuronidase (EC 3.2.1.31), alkaline phosphatase, amylase such as, for example, alpha-amylase (EC 3.2.1.1) or beta-glucanase (EC 3.2.1.4 or EC 3.2.1.6).
  • phytase EC 3.1.3.8 or 3.1.3.26
  • xylanase EC 3.2.1.8
  • galactanase EC 3.2.1.89
  • alpha-galactosidase EC 3.2.1.22
  • protease EC 3.4.
  • phospholipases examples include phospholipase Al (EC 3.1.1.32), phospholipase A2 (EC 3.1.1.4), lysophospholipase (EC 3.1.1.5), phospholipase C (EC 3.1.4.3) or phospholipase D (EC 3.1.4.4).
  • the spores according to the present invention comprise YdzH, YnzSP or YdgB fused to phytase, alkaline phosphatase, beta-glucoronidase, green fluorescence protein or affinity ligands such as, e.g., Pex5.
  • Soluble enzymes can be immobilized following different procedures mainly in order to reuse and to stabilize them. Examples of immobilized enzymes are Candida rugosa lipase (CRL) encapsulated without carrier, trypsin, Candida Antarctica lipase (CalB) or penicillin G acylase cross-linked to macromolecule (e.g.
  • PTS-1 polyethylene glycol or dextran sulfate
  • alkylsulfatase on anionic exchangers An example of a useful passenger is the A. niger PTS-1 affine Pex5 protein.
  • Pex5 is the receptor of PTS-1 [McCollum et al, J. Cell Biol. 121, 761-774 (1993)].
  • PTS-1 is a C- terminal tri-peptide extension of a protein promoting peroxisomal localization of the protein.
  • the C-terminal tri-peptide PTS-1 can be a variant of [PAS]-[HKR]-[L] as described in Emanuelsson et al, J. Mol. Biol. (2003) 330, 443-456.
  • PTS-1 is - SKL or -PRL.
  • affinity ligand denotes not only molecules that have biological relationship in vivo with the target protein but also a variety of other ligands such as fusion proteins or affinity tags.
  • affinity tags or fusion proteins are the maltose binding protein (MBP) that interacts with cross-linked amylose and is eluted with maltose, polyhistidine tags that consists of 6 His residues binding to chelated Ni 2+ or FLAG tag that is an eight amino acid hydrophilic peptide that binds to a specific antibody linked onto a column.
  • Suitable bioactive (poly)peptides which can be used as a passenger fused to one of the carriers mentioned above are antimicrobial and/or antifungal polypeptides.
  • antimicrobial peptides AMP's
  • CAP18 antimicrobial peptides
  • leucocin A tritrpticin
  • protegrin-1 protegrin-1
  • thanatin defensin
  • lactoferrin lactoferricin
  • ovispirin such as novispirin, plectasins, and statins, including the compounds and polypeptides disclosed in WO 03/044049 and WO
  • AFP's antifungal polypeptides
  • Aspergillus giganteus and Aspergillus niger peptides, as well as variants and fragments thereof which retain antifungal activity, as disclosed in WO 94/01459 and WO 02/090384.
  • Inert spores are spores which are unable to germinate and recreate vegetative life. Methods to generate Bacillus subtilis non-germinating strains are well known from people skilled in the art. Inert spores according to this aspect of the invention are for example used "in vitro" and allow for example an alternative option to expensive classical systems of immobilized enzymes. They primarily have the advantage of spore resistance to harsh chemical conditions.
  • Such genetically modified or genetically engineered viable spore systems expressing bioactive molecules at the spore surface have a great potential use in particular in animal feeding. Further, it has been found that genetically modified or "genetically engineered” inert spore systems expressing affinity ligands or immobilized enzymes at the surface have a great potential use in biocatalysis and in downstream purification processes. Especially the resistance to harsh chemicals, desiccation, strong pressure, or high temperatures allows the spores to be a potentially valuable tool for the display of bioactive molecules, like biocatalytic enzymes or bioactive feed enzymes that must survive harsh reaction conditions to deliver their full potential.
  • spore and "spore system” as used herein are equivalent expressions and denote differentiated resistant structures that come from differentiation of microbial vegetative cells under hostile physical or chemical conditions such as, but not limited to, extreme pH, heat, pressure, desiccation or an extract/mixture containing said structures, wherein the spore is derived from a parent spore-forming organisms.
  • the spore which can be used in the present invention may be publicly available from different sources, e.g., Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ), Inhoffenstrasse 7B, D-38124 Braunschweig, Germany, American Type Culture Collection (ATCC), P.O.
  • DSMZ Deutsche Sammlung von Mikroorganismen und Zellkulturen
  • ATCC American Type Culture Collection
  • genetically modified or “genetically engineered” means the scientific alteration of the structure of genetic material in a living organism. It involves the production and use of recombinant DNA. Genetic engineering may be done by a number of techniques known in the art, such as gene replacement, gene amplification, gene disruption, transfection, transformation using plasmids, viruses, or other vectors.
  • a genetically modified organism e.g. genetically modified microorganism, is also often referred to as a recombinant organism, e.g. recombinant microorganism.
  • the genetically modified, inert spore comprises a recombinant DNA construct comprising a first DNA portion encoding the carrier and a second DNA portion encoding the passenger, which construct is expressed as a carrier-passenger fusion protein.
  • the spore-forming microorganism expressing said fusion protein is preferably selected from Bacillus, more preferably from B. subtilis.
  • the invention relates to the use of inert spore systems expressing the passengers as described above.
  • the spore system as described herein is suitable for any enzymes used in the food or feed industry.
  • spore system allows a continuously deliver of fresh enzymes or bioactive polypeptides. It is a further advantage of such systems that the spores are resistant to difficult conditions of digestive tracts and that they are easy to produce and can be made at low costs.
  • the genetic modification is accomplished by transformation of a precursor cell using a vector containing the chimeric transcription unit (chimeric DNA encoding the carrier/passenger fusion protein), using standard methods known to persons skilled in the art and then inducing the precursor cell to produce spores according to the invention.
  • the system may be constructed as such, that the chimeric DNA may be under the control of one or more inducible promoter.
  • the chimeric construct may have one or more enhancer elements or upstream activator sequences and the like associated with it.
  • the construct may also comprise an inducible expression system.
  • the inducible expression system is such that when said spore germinates into a vegetative cell, the active polypeptide or enzyme is not expressed unless exposed to an external stimulus, e.g., change to a specific pH.
  • the DNA constructs encoding the carrier-passenger fusion protein to be displayed on the spore surface can be generated by methods known to the skilled person, wherein the carrier DNA is selected from ynzSP, ydgB oxydzH. It is not critical which one of the small proteins is fused to the passenger. Furthermore, any passenger described above, e.g.
  • Examples of enzymes displayed on the spore surface and used as carrier are alkaline phosphatase (PhoA), beta-glucuronidase (GUS) or phytase (Phy) which can be fused to one of the carriers, such as e.g. YnzSP, YdgB or YdzH.
  • the carriers e.g. ynzSP, ydgB or ydzH
  • the passenger DNA e.g. phoA, uidA gene of E. coli or phy.
  • subtilis suicide vector pDG364 (BGSC-ECE46; Karmazyn-Campelli et al., 1989).
  • the resulting plasmid is then linearized, e.g. using Xhol, and transformed by double-crossover recombination at the non-essential amyE locus into a suitable strain, such as e.g. B. subtilis PY79.
  • the resulting strain can be used for spore display.
  • the respective translational fusions are shown in Figures 1 to 3.
  • a spore displaying an affinity ligand is as follows: the Aspergillus niger pex5 gene encodes for a protein which is recognizing specifically PTS-1 motifs [e.g. SKL (serine-lysine-leucine) motifs or PRL (proline-arginine-leucine)].
  • PTS-1 motif can be engineered at the carboxyl-terminus of protein for specific tagging and subsequent capture of the tagged protein.
  • a translational fusion using ynzSP and pex5 can be generated as described above, whereby the construct is cloned into the BamHl-HindUl restriction site of a suitable vector, such as e.g. the B. subtilis suicide vector pDG364 (BGSC-ECE46;
  • the resulting plasmid is then linearized, e.g. using Xhol, and transformed by double-crossover recombination at the non-essential amyE locus into a suitable strain, such as e.g. B. subtilis PY79.
  • the A. niger pex5 coding sequence may be codon-adapted for expression in B. subtilis.
  • the relevant optimized passenger sequence which is designed to be free of BamRl, HmdIII and Nhel sites, is detailed in Figure 5 and strictly encodes the same protein as the passenger sequence of Figure 4 ( Figure 6).
  • the ynzSP-alalO(N ol)-optipex5 synthetic translational fusion is subsequently cloned between the BamRl and HmdIII sites into the B. subtilis suicide vector pDG364 for ectopic integration within the non-essential amyE locus and transformed into a suitable strain, such as e.g. B. subtilis PY79.
  • Example 1 The construction of a strain to display green fluorescence protein (GFP) fused to YdzH is described in Example 1 (see Figure 9).
  • GFP green fluorescence protein
  • Display of enzymatic activity or activity of the affinity ligand can be measured by known techniques, such as described in WO 2008/017483 (see in particular the Examples).
  • the spore system according to the invention expresses a feed enzyme on the spore surface, the spore germinates in the intestinal tract. More preferably, the spore germinates in the duodenum and/or the jejunum of the intestinal tract.
  • the viable spore can be constructed as such that it displays a combination of bioactive molecules, such as e.g., an enzyme, such as e.g. a feed enzyme, and a bioactive polypeptide.
  • bioactive molecules such as e.g., an enzyme, such as e.g. a feed enzyme, and a bioactive polypeptide.
  • compositions comprising spores which express bioactive molecules as defined herein on their surface.
  • the bioactive molecule may be an enzyme, bioactive (poly)peptides, an epitope and/or an affinity ligand.
  • the composition may comprise a spore expressing an enzyme and a bioactive polypeptide as passenger on the spore surface.
  • the composition comprises spores of the invention which express a feed enzyme, preferably phytase (EC 3.1.3.8 or 3.1.3.26), beta- glucuronidase (EC 3.2.1.31) or alkaline phosphatase.
  • a composition according to the present invention may comprise a spore system expressing affinity ligands such as e.g. A. niger PTS-l-affine Pex5 protein or the green fluorescence protein (GFP).
  • compositions of the invention comprising a spore system as described herein are used in the feed industry as e.g. additive to animal feed.
  • Said animal feed compositions may comprise a spore expressing a feed enzyme according to the invention and at least one or more vitamins and further compounds used in animal feeding and known to the skilled person.
  • the vitamins may be either water- or fat-soluble.
  • the animal feed composition may have a crude protein content of 50 to 800 g/kg and comprise a spore expressing a feed enzyme according to the invention.
  • feed or feed composition means any compound, preparation, mixture, or composition suitable for, or intended for intake by an animal.
  • the animal feed composition comprising the spore system as of the present invention may be available in the form of a premix.
  • animals are non-ruminants, and ruminants. Ruminant animals include, for example, animals such as sheep, goat, and cattle, e.g. cow such as beef cattle and dairy cows. In a particular embodiment, the animal is a non-ruminant animal.
  • Non-ruminant animals include mono-gastric animals, e.g.
  • pig or swine including, but not limited to, piglets, growing pigs, and sows
  • poultry such as turkeys, ducks and chickens (including but not limited to broiler chicks, layers); fish (including but not limited to salmon, trout, tilapia, catfish and carp); and crustaceans (including but not limited to shrimp and prawn).
  • the term animal does not include a human being.
  • composition may further comprise feed-additive ingredients such as coloring agents, e.g. carotenoids such as beta-carotene, astaxanthin, and lutein; aroma compounds;
  • coloring agents e.g. carotenoids such as beta-carotene, astaxanthin, and lutein
  • aroma compounds e.g. aroma compounds
  • the animal feed additive of the invention is intended for being included (or prescribed as having to be included) in animal diets or feed, in particular in premixes, at levels of 0.01 to 10.0%; more particularly 0.05 to 5.0%; or 0.2 to 1.0% (% meaning g additive per 100 g feed).
  • Animal feed compositions or diets have a relatively high content of protein.
  • Poultry and pig diets can be characterized as indicated in Table B of WO 01/58275, columns 2-3.
  • Fish diets can be characterized as indicated in column 4 of this Table B.
  • such fish diets usually have a crude fat content of 200-310 g/kg.
  • WO 01/58275 is hereby
  • the animal feed composition of the invention has a content of metabolisable energy of 10-30 MJ/kg; and/or a content of calcium of 0.1-200 g/kg; and/or a content of available phosphorus of 0.1-200 g/kg; and/or a content of methionine of 0.1-100 g/kg; and/or a content of methionine plus cysteine of 0.1 - 150 g/kg; and/or a content of lysine of 0.5-50 g/kg.
  • the content of metabolisable energy, crude protein, calcium, phosphorus, methionine, methionine plus cysteine, and/or lysine is within any one of ranges 2, 3, 4 or 5 in Table B of WO 01/58275 (R. 2-5).
  • the nitrogen content is determined by the Kjeldahl method (A.O.A.C., 1984, Official Methods of Analysis 14th ed., Association of Official Analytical Chemists, Washington DC).
  • Metabolisable energy can be calculated on the basis of the NRC publication Nutrient requirements in swine, ninth revised edition 1988, subcommittee on swine nutrition, committee on animal nutrition, board of agriculture, national research council. National Academy Press, Washington, D.C., pp. 2-6, and the European Table of Energy Values for Poultry Feed-stuffs, Spelderholt centre for poultry research and extension, 7361 DA Beekbergen, The Netherlands. Grafisch bedrijf Ponsen & looijen bv, Wageningen. ISBN 90-71463-12-5.
  • the dietary content of calcium, available phosphorus and amino acids in complete animal diets is calculated on the basis of feed tables such as Veevoedertabel 1997, gegevens over chemische samenstelling, verteerbaarheid en voederwaarde van voedermiddelen, Central Veevoederbureau, Runderweg 6, 8219 pk Lelystad. ISBN 90-72839-13-7.
  • the animal feed composition of the invention contains at least one vegetable protein or protein source. It may also contain animal protein, such as Meat and Bone Meal, and/or Fish Meal, typically in an amount of 0-25%.
  • vegetable proteins refers to any compound, composition, preparation or mixture that includes at least one protein derived from or originating from a vegetable, including modified proteins and protein-derivatives.
  • the protein content of the vegetable proteins is at least 10, 20, 30, 40, 50, or 60% (w/w).
  • Vegetable proteins may be derived from vegetable protein sources, such as legumes and cereals, for example materials from plants of the families Fabaceae (Leguminosae), Cruciferaceae, Chenopodiaceae, and Poaceae, such as soy bean meal, lupin meal and rapeseed meal.
  • Fabaceae Leguminosae
  • Cruciferaceae Chenopodiaceae
  • Poaceae such as soy bean meal, lupin meal and rapeseed meal.
  • the vegetable protein source is material from one or more plants of the family Fabaceae, e.g. soybean, lupine, pea, or bean.
  • the vegetable protein source is material from one or more plants of the family Chenopodiaceae, e.g. beet, sugar beet, spinach or quinoa.
  • the animal feed composition of the invention contains 0-80% maize; and/or 0-80%> sorghum; and/or 0-70%> wheat; and/or 0-70%> Barley; and/or 0-30%> oats; and/or 0-30%> rye; and/or 0-40%> soybean meal; and/or 0-25%> fish meal; and/or 0-25% meat and bone meal; and/or 0-20% whey.
  • Animal diets can e.g. be manufactured as mash feed (non pelleted) or pelleted feed.
  • the milled feed-stuffs are mixed and sufficient amounts of essential vitamins and minerals are added according to the specifications for the species in question.
  • the spore strain can be added as solid or liquid formulation. It is at present contemplated that the Bacillus strain is administered in one or more of the following amounts (dosage ranges): 10 E2-14, 10 E4-12, 10 E6-10, 10 E7-9, preferably 10 E8 CFU/g of feed (the designation E meaning exponent, viz., e.g., 10 E2-14 means 102-1014).
  • a spore which is genetically modified or genetically engineered by a genetic DNA construct wherein the genetic DNA construct comprises a first DNA portion encoding a carrier and a second DNA portion encoding a passenger which is a bioactive molecule and, which construct, when transcribed and translated, expresses a fusion protein between the carrier and the passenger.
  • a spore as above which is a spore of Clostridia or Sporolactobacillus or Bacillus, preferably Bacillus subtilis, more preferably Bacillus subtilis 1 A747.
  • the first DNA portion of the construct encoding the carrier is a small protein with a molecular weight of less than 12 kDa, which is displayed at the surface of the forespore of a spore-forming microorganism and which is encoded by a DNA which is under control of sporulation transcription factor sigma K , preferably said small protein is selected from YnzSP ( Figure 10), YdgB ( Figure 11) or YdzH ( Figure 12).
  • a feed enzyme preferably phytase
  • a bioactive polypeptide preferably bacteriocin
  • composition comprising spores as under (5).
  • An animal feed additive comprising (a) a spore strain as defined under (5), (b) at least one fat-soluble vitamin, and (c) at least one water-soluble vitamin.
  • Figure 1 Sequence of the ynzSP-(ala)15-phoA-SFfree translational fusion (SEQ ID NO: l). BamRl and HmdIII cloning sites are in bold underlined. The coding sequence of ynzSP is in bold. The coding sequence of phoA is underlined. Spacer region is in upper case font.
  • FIG. 1 Sequence of the ynzSP-(ala)15-phy-Sigfree translational fusion (SEQ ID NO:2). BamRl and HmdIII cloning sites are in bold underlined. The coding sequence of ynzSP is in bold. The coding sequence of phy is underlined. Spacer region is in upper case font.
  • Figure 3 Sequence of the ynzSP-alalO(Nhel)-uidA synthetic translational fusion (SEQ ID NO:3). BamRl and HmdIII cloning sites are in bold underlined. The coding sequence of ynzSP is in bold. The coding sequence of uidA is underlined. Spacer region is in lower case font. Nhel restriction site in the spacer is in lower case underlined fonts.
  • Figure 4 Sequence of the ynzSP-alalO-pex5 translational fusion (SEQ ID NO:4). BamRl and HmdIII cloning sites are in bold underlined. The coding sequence of ynzSP is in bold. The coding sequence of pex5 is underlined. Spacer region is in lower case font.
  • FIG. 5 Sequence of A. niger pex5 coding sequence (SEQ ID NO:5), codon-adapted for expression in B. subtilis. Underlined TAATAA are stop codons.
  • FIG. 7 Sequence of the ydgB gene (SEQ ID NO:7) encoding the mother-cell-specific sigma factor K-controlled spore-associated short protein identified as carrier. Sequence is in bold downstream from 200 bp of the promoter sequence.
  • Figure 8 Sequence of the ydzH gene (SEQ ID NO:8) encoding the mother-cell-specific sigma factor K-controlled spore-associated short protein identified as carrier. Sequence is in bold downstream from 200 bp of the promoter sequence.
  • Figure 9 Sequence of the ydzH-gfp translational fusion (SEQ ID NO:9). The coding sequence of ydzH is in bold. The coding sequence of gfp is underlined.
  • Fluorescence Protein fused to YdzH This example describes the construction of B. subtilis strain designed to display Green Fluorescence Protein (GFP) at the spore surface through fusion with the spore-associated short protein YdzH.
  • GFP Green Fluorescence Protein
  • the sequence of the ydzH-gfp translational fusion is given in Figure 9. GFP is fused to the 3' terminus of the ydzH.
  • the translational fusion is cloned between the BamHl and Hindlll sites into a B. subtilis suicide vector pDG364 for subsequent ectopic integration within the non-essential amyE locus.
  • the resulting plasmid is linearized with Xhol and transformed into B. subtilis PY79, resulting by double-crossover recombination at the non-essential amyE locus in a B.
  • subtilis spore display strain subtilis spore display strain.
  • a fluorescent micrograph of Bacillus subtilis cells expressing GFP fused to the 3' terminus of the ydzH gene was generated. The cells were collected 4h after induction of sporulation by resuspension and stained with a fluorescent dye. YdzH-GFP proteins form foci around the outside of the forespore.
  • Example 2 Construction of B. subtilis strains designed to display enzymes fused to
  • YnzSP Construction of the gene fusions is started by independent PCR amplifications of carrier and passenger fragments, subsequently combined by overlapping PCR to generate the translational fusions according to WO 2008/017483 except that ynzSP is used as carrier DNA.
  • the enzymes selected as carriers are alkaline phosphatase, phytase, and ⁇ -glucuronidase, respectively.
  • the respective translational fusions are shown in Figure 1 (i.e. SEQ ID NO: l), Figure 2 (i.e. SEQ ID NO:2) or Figure 3 (i.e. SEQ ID NO:3), wherein the genes encoding said enzymes are fused to the 3 '-end of the ynzSP ORF.
  • the fusion constructs are cloned into the BamHl-HindUl restriction site of the B. subtilis suicide vector pDG364 (BGSC-ECE46; Karmazyn-Campelli et al., 1989). After linearization of the resulting plasmids with Xhol they are transformed into B. subtilis PY79 by double-crossover recombination into the amyE locus.

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Abstract

La présente invention concerne la présentation de molécules bioactives à la surface des spores, destinée à être utilisée à la fois dans des applications in vitro et in vivo. Trois petits cadres ouverts de lecture (ORF), qui sont très utiles pour la présentation de molécules bioactives à la surface des spores, ont été identifiés. Les petites protéines codées ont un poids moléculaire inférieur à 12 kDa, ce qui correspond à moins d'environ 100 acides aminés.
PCT/EP2011/060828 2010-06-30 2011-06-28 Présentation à la surface des spores de molécules bioactives WO2012001000A1 (fr)

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WO2022171904A1 (fr) 2021-02-15 2022-08-18 Livingmed Biotech S.R.L. Souches de clostridium génétiquement modifiées exprimant des antigènes recombinants et leurs utilisations

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WO2019060574A1 (fr) 2017-09-20 2019-03-28 Spogen Biotech Inc. Protéines de fusion, bactéries recombinantes et fragments d'exine pour la santé des plantes
US20240254434A1 (en) * 2019-12-18 2024-08-01 Exomnis Biotech Bv Genetically modified clostridium strains and uses thereof
WO2022226842A1 (fr) * 2021-04-28 2022-11-03 台北科技大学 Procédé et kit de détection d'analytes dans un échantillon

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Publication number Priority date Publication date Assignee Title
WO2021179892A1 (fr) * 2020-03-09 2021-09-16 Taipei University Of Technology Procédés de détection d'un composé, d'un anticorps ou d'une protéine à l'aide d'endospores ou de bactéries recombinées en tant qu'élément de détection
WO2022171904A1 (fr) 2021-02-15 2022-08-18 Livingmed Biotech S.R.L. Souches de clostridium génétiquement modifiées exprimant des antigènes recombinants et leurs utilisations

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