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WO2008037783A1 - Process for preparing 2-oxo-2,5-dihydro-1h-pyrido[3,2-b]indole-3-carbonitriles - Google Patents

Process for preparing 2-oxo-2,5-dihydro-1h-pyrido[3,2-b]indole-3-carbonitriles Download PDF

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WO2008037783A1
WO2008037783A1 PCT/EP2007/060288 EP2007060288W WO2008037783A1 WO 2008037783 A1 WO2008037783 A1 WO 2008037783A1 EP 2007060288 W EP2007060288 W EP 2007060288W WO 2008037783 A1 WO2008037783 A1 WO 2008037783A1
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formula
compound
substituted
alkyl
indole
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PCT/EP2007/060288
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Wim Bert Griet Schepens
Bart Rudolf Romanie Kesteleyn
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Tibotec Pharmaceuticals Ltd.
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D209/00Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom
    • C07D209/02Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring
    • C07D209/04Indoles; Hydrogenated indoles
    • C07D209/30Indoles; Hydrogenated indoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to carbon atoms of the hetero ring
    • C07D209/40Nitrogen atoms, not forming part of a nitro radical, e.g. isatin semicarbazone
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings

Definitions

  • This invention relates to a process for preparing 2-oxo-2,5-dihydro-lH-pyrido[3,2-b]- indole-3-carbonitriles starting from 1 -substituted indole-2-carboxaldehydes with an aromatic amine and reacting the thus obtained intermediates with a cyanoacetic acid ester.
  • HIV human immunodeficiency virus
  • HIV inhibitors which comprises the nucleoside reverse transcriptase inhibitors (NRTIs) and the non-nucleoside reverse transcriptase inhibitors (NNRTIs).
  • NRTIs nucleoside reverse transcriptase inhibitors
  • NRTIs non-nucleoside reverse transcriptase inhibitors
  • NRTIs nucleoside reverse transcriptase inhibitors
  • NcRTIs nucleotide competitive RT inhibitors
  • NcRTI compounds involve multi-step procedures of four or more steps.
  • WO 2005/111047 at p. 73 describes a procedure for preparing 2-oxo-2,5-dihydro-lH-pyrido[3,2-b]indole-3- carbonitriles starting from N-acetyl-3 -hydroxy- indole wherein the 3 -hydroxy group is substituted by an arylamino group, then the acetyl group is removed and the resulting indole derivative is formylated in a Vilsmeier-Haack procedure using POCI3 and DMF to a 2-formyl-3-arylamino-indole.
  • the latter is cyclized with ethyl cyanoacetate to a 2-0X0-2, 5-dihydro-lH-pyrido[3,2-b]indole-3-carbonitrile, which is alkylated in its 5-position with an alkyl iodide.
  • This alkylation has to be postponed until after the formylation reaction because when using 1 -alkyl- indoles as starting materials, the formylation reaction gives rise to side reactions resulting in lower yields and complex purification procedures.
  • the Vilsmeier-Haack formylation reaction in the procedure of WO 2005/111047 runs in low yield (25% in the example that is referred to) so that the described procedure is inappropriate for scaling up due to its low overall yield.
  • the present invention is aimed at providing new synthesis processes for preparing
  • NcRTI compounds that comprise less steps, that can be scaled up for the production of multi-kilogram or larger quantities, that are reproducible, economical and through which the end product is obtained in high yield and with a high degree of purity.
  • the present invention concerns a process for preparing a compound of formula:
  • R 1 is Ci_ 6 alkyl optionally substituted with diCi_ 6 alkylamino, pyrrolidinyl, piperidinyl, morpholinyl;
  • R 2 is hydrogen or Ci_6alkyloxy
  • Ar is phenyl or pyridyl, both optionally substituted with one, two or three substituents selected from Chalky!, halo, nitro, cyano and Ci_6alkoxy; wherein the process comprises condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH 2 (III), thus obtaining a (2-iminomethyl-lH-indol-3-yl)- amine (IV-a), which is optionally converted to an aldehyde (IV-b), and reacting the (2-imino methyl- lH-indo 1-3 -yl)-amine (IV-a) or the aldehyde (IV-b), or a mixture thereof, with a cyanoacetic acid ester (V) as represented in the following reaction scheme, wherein R 1 , R 2 and Ar are as specified above, Lg is a leaving group and R is Ci_ 4 alky
  • this invention concerns a process for preparing a compound of formula (IV-a) or (IV-b), or a mixture thereof, wherein the compound of formula (IV-a) or (IV-b) is as specified above, wherein said process comprises condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH 2 (III), thus obtaining a (2-iminomethyl-lH-indol-3-yl)-amine (IV-a), which is optionally converted to an aldehyde (IV-b) as represented in the following reaction scheme, wherein R 1 , R 2 and Ar are as specified above, Lg is a leaving group:
  • the invention concerns a process for preparing a compound of formula (I), as specified above, wherein the compound of formula (I) is prepared by condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH 2 (III), and with a cyanoacetic acid ester (V), without isolation of the condensation product of the reaction between (II) and (III), to obtain the desired end product of formula (I), as outlined in the following reaction scheme wherein R 1 , R 2 , Ar, Lg and R are as specified above:
  • Ci_ 4 alkyl defines straight or branched chain saturated hydrocarbon radicals having from 1 to 4 carbon atoms such as methyl, ethyl, propyl, 2-propyl, butyl, 2-butyl, 2-methyl-l -propyl, 2-methyl-2-propyl.
  • Ci_4alkyl may be a linear Ci_ 4 alkyl (i.e. n.Ci_ 4 alkyl, i.e. methyl, ethyl, n.propyl or n.butyl).
  • Ci_ 6 alkyl encompasses Ci_4alkyl and the homologues having 5 or 6 carbon atoms such as, e.g., pentyl, 2-methylbutyl, 3-methylbutyl, 2-ethylpropyl, hexyl, 2-methylpentyl, 3-methyl- pentyl, 2-ethylbutyl, and the like.
  • Particular subgroups of the compounds of formula (I) or of the intermediates used in the processes described herein are those wherein R 1 is Ci_ 4 alkyl, in particular methyl; or wherein R 1 is linear Ci_ 4 alkyl, in particular n.propyl or n.butyl, substituted in with diCi_ 6 alkylamino, pyrrolidinyl, piperidinyl, morpholinyl.
  • Particular subgroups of the compounds of formula (I) or of the intermediates used in the processes described herein are those wherein Ar is phenyl substituted with nitro or halo, in particular Ar is phenyl substituted with nitro, more in particular Ar is 4-nitrophenyl.
  • Ar is pyridyl substituted with halo, in particular with chloro, more in particular Ar is a group which can be designated as 2-chloro-pyridin-5-yl or 6-chloro-3-pyridinyl.
  • Lg is halo, in particular chloro, bromo, iodo, or Lg is a triflate (or trifluoromethanesulfonate) group.
  • the conversion from (II) with (III) to (IV-a) is an aryl animation reaction in which an aromatic halide or pseudohalide (such as a triflate) is reacted with an amine.
  • this aryl amination reaction is a Buchwald-Hartwig type of reaction, which comprises reacting an aromatic halide or pseudohalide with the amine in the presence of a catalyst, in particular a palladium catalyst.
  • Suitable palladium catalysts are palladium phosphine complexes, such as the palladium Xantphos complexes, in particular Pd(Xantphos)2 (Xantphos being 9,9'-dimethyl-4,5-bis(diphenylphosphino)- xanthene), the DPPF complexes of palladium such as (DPPF)PdCl 2 (DPPF being l,l '-bis(diphenylphosphino)ferrocene), the palladium complexes of l,l'-binaphthalene- 2,2'-diylbis(diphenylphosphine) (BINAP), which can be used as such or can be prepared in situ such as by reaction of a palladium salt or palladium complex such as e.g.
  • BINAP palladium (II) acetate (Pd(OAc) 2 ) or (palladium)2(dibenzylideneacetone)3 (Pd 2 (dba) 3 ), with BINAP.
  • the BINAP ligand may be used in its racemic form.
  • This reaction may be conducted in a suitable solvent such as an aromatic hydrocarbon, e.g. toluene, or an ether, e.g. tetrahydrofuran (THF), methylTHF, dioxane and the like, in the presence of a base such as an alkali metal carbonate or phosphate, e.g.
  • an alkoxide base in particular an alkali metal Ci_ 6 alkoxide such as sodium or potassium t.butoxide (NaOtBu or KOtBu), or an organic bases such as l,8-diazabicyclo(5.4.0)undec-7-ene (DBU) or a tertiary amine (e.g. triethylamine), and in particular in the presence of cesium carbonate.
  • Ci_ 6 alkoxide such as sodium or potassium t.butoxide (NaOtBu or KOtBu)
  • organic bases such as l,8-diazabicyclo(5.4.0)undec-7-ene (DBU) or a tertiary amine (e.g. triethylamine), and in particular in the presence of cesium carbonate.
  • DBU l,8-diazabicyclo(5.4.0)undec-7-ene
  • a tertiary amine e.g. triethyl
  • the intermediates of formula (IV-a) may be converted to the corresponding aldehydes of formula (IV-b) by treatment of the former with aqueous acid, e.g. aqueous HCl or HBr.
  • aqueous acid e.g. aqueous HCl or HBr.
  • the intermediates of formula (IV-a) will be transformed to those of formula (IV-b) during the work-up of the reaction of (II) with (III).
  • Washing with aqueous acid, for example with aqueous HCl, of the reaction mixture of the reaction of (II) with (III) may be done to remove basic components such as unreacted Ar-NH 2 (III). This washing step may cause the hydrolysis of the enamine (IV-a) to the aldehyde (IV-b).
  • an alcohol such as methanol, ethanol, n.propanol, isopropanol
  • an ether such as THF
  • a dipolar aprotic solvent such as DMA, DMF, DMSO, NMP
  • a halogenated hydrocarbon such as dichloromethane, chloroform
  • an aromatic hydrocarbon such as toluene
  • a glycol such as ethylene glycol
  • a base e.g. an amine such as piperidine, pyrrolidine, morpholine, triethylamine, diisopropylethylamine (DIPE), and the like.
  • the intermediates of formula (II) wherein Lg is halo may be prepared by halogenating an indole derivative of formula (VI).
  • Suitable halogenating agents are the halogens themselves or halogenating reagents such as the halogenated succinimides, e.g. N-chloro or N-bromosuccinimide.
  • This halogenating reaction may be conducted in a suitable solvent, such as, for example, an aromatic hydrocarbon, e.g. toluene, or an ether, e.g. tetrahydrofuran (THF), methylTHF, dioxane, and the like.
  • Other derivatives of formula (II) can be prepared by exchanging the halo group by other leaving groups.
  • the intermediates of formula (II) may also be prepared by first preparing 3-bromo- indole-2-carboxaldehyde and subsequent N-alkylation of the latter with a reagent R 1 -Lg, wherein R 1 and Lg are as specified above and Lg in particular is a halo group such as chloro or bromo.
  • the N-alkylation may be conducted in a suitable solvent, e.g. a dipolar aprotic solvent such as DMA, DMF, DMSO and the like in the presence of a base such as an alkali metal hydride, e.g. NaH or LiH.
  • a nucleophilic catalyst may be added to the reaction mixture, e.g. tetrabutylammonium iodide (TBAI).
  • the process for preparing the compound of formula (I) of the invention starts from intermediates (II) and (III) to obtain the intermediate (IV) and subsequent condensation of (IV) with (V) to obtain compound (I). In one embodiment, all of the steps of this process may be conducted in the same solvent or solvent mixture.
  • this process is conducted in a one-pot procedure, without isolation of intermediate (IV).
  • the reaction of (II) with (III) is conducted in the solvent described above for this reaction, in particular a hydrocarbon such as toluene, which is removed partially or completely after which the solvent described above for the reaction of (IV) with (V), in particular an alcohol such as glycol, is added.
  • This process variant offers the possibility to synthesize compound (I) in a quick, simple and straightforward manner.
  • An additional feature of the present invention comprises the fact that the intermediates of formula
  • Particular intermediates of formula (IV) are those wherein the radicals Ar, R 1 , and R 2 have the specific meanings defined above.
  • a subclass of the intermediates of formula (IV) is that wherein X is N-Ar, i.e. intermediates (IV-a).
  • Another subclass of the intermediates of formula (IV) is that wherein X is O, i.e. intermediates (IV-b).
  • the process of the present invention runs in relatively high yield making it suitable for scaling up for the production of multi-kilogram and larger quantities.
  • the process is well-suited for preparing end products having Ar groups with various substitutions, whereas the process described in WO 2005/111047 gave poor results, for example for Ar being chloropyridine.
  • the process moreover is reproducible and economical. Further advantages that may be mentioned are the availability of starting materials and reagents that can be purchased or are easy to prepare.
  • N-Bromosuccinimide (1.05 equiv., 290 mmol, 51.7 g) was added to a solution of l-methylindole-2-carboxaldehyde (1) (1.0 equiv., 276 mmol, 44.0 g) in Me-THF
  • N-Bromosuccinimide (1.2 equiv., 69.4 mmol, 12.4 g) was added to a solution of indole-2-carboxaldehyde (12) [Agnusdei, M.; Bandini, M.; Melloni, A., Alfonso; Umani-Ronchi, A. J. Org. Chem. 2003, 68, 7126-7129] (1.0 equiv., 57.9 mmol, 8.4 g) in Me-THF (500 ml). The reaction mixture was stirred at room temperature for 2 h.

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Abstract

A process for preparing 2-oxo-2,5-dihydro-1H-pyrido[3,2-b]indole-3-carbonitriles starting from 1-substituted indole-2-carboxaldehyde with an aromatic amine and reacting the thus obtained intermediate with a cyanoacetic acid ester.

Description

Process for Preparing 2-oxo-2,5-dihydro-lH-pyrido[3,2-b]indole-3-carbonitriles
Field of the Invention
This invention relates to a process for preparing 2-oxo-2,5-dihydro-lH-pyrido[3,2-b]- indole-3-carbonitriles starting from 1 -substituted indole-2-carboxaldehydes with an aromatic amine and reacting the thus obtained intermediates with a cyanoacetic acid ester.
Background of the Invention
The virus causing the acquired immunodeficiency syndrome (AIDS) is generally known as the human immunodeficiency virus (HIV). The spread of HIV has caused and continues to cause serious health problems throughout the world. A number of HIV inhibitory drugs have been developed that currently are used to combat the virus. These drugs have proven out to be effective in suppressing the virus, in particular when used in combination therapy. However no therapy is capable of completely eliminating the virus from the body.
Several classes of HIV inhibitors at present are available and new ones are being explored. One such class is that of the reverse transcriptase inhibitors, which comprises the nucleoside reverse transcriptase inhibitors (NRTIs) and the non-nucleoside reverse transcriptase inhibitors (NNRTIs). Recently a further class of reverse transcriptase inhibitors has been identified which interact with the nucleotide binding site and not with the NNRTI binding site which are nucleotide competitive RT inhibitors (hereafter referred to as "NcRTIs"). Compounds of this class have been described in WO 2004/046163, WO 2005/111034, WO 2005/111035, WO 2005/111047 and WO 2005/111044. Combinations of the compounds of WO 2004/046163 with certain HIV inhibitors have been described in WO 2005/110411. Compounds of this class are promising for use in HIV therapy for use against NRTI and NNRTI mutant strains. Synthetic approaches for the preparation of these compounds have been described in these references.
Compounds of this new class are being considered for further development, including clinical studies. Consequently there is a need for producing larger quantities of these active ingredients based on processes that provide the products in high yield and with a high degree of purity.
The synthetic approaches that have been described to prepare NcRTI compounds involve multi-step procedures of four or more steps. In particular WO 2005/111047 at p. 73 describes a procedure for preparing 2-oxo-2,5-dihydro-lH-pyrido[3,2-b]indole-3- carbonitriles starting from N-acetyl-3 -hydroxy- indole wherein the 3 -hydroxy group is substituted by an arylamino group, then the acetyl group is removed and the resulting indole derivative is formylated in a Vilsmeier-Haack procedure using POCI3 and DMF to a 2-formyl-3-arylamino-indole. The latter is cyclized with ethyl cyanoacetate to a 2-0X0-2, 5-dihydro-lH-pyrido[3,2-b]indole-3-carbonitrile, which is alkylated in its 5-position with an alkyl iodide. This alkylation has to be postponed until after the formylation reaction because when using 1 -alkyl- indoles as starting materials, the formylation reaction gives rise to side reactions resulting in lower yields and complex purification procedures. Moreover, the Vilsmeier-Haack formylation reaction in the procedure of WO 2005/111047 runs in low yield (25% in the example that is referred to) so that the described procedure is inappropriate for scaling up due to its low overall yield.
The present invention is aimed at providing new synthesis processes for preparing
NcRTI compounds that comprise less steps, that can be scaled up for the production of multi-kilogram or larger quantities, that are reproducible, economical and through which the end product is obtained in high yield and with a high degree of purity.
Description of the Invention
The present invention concerns a process for preparing a compound of formula:
Figure imgf000003_0001
or a pharmaceutically acceptable salt thereof, wherein
R1 is Ci_6alkyl optionally substituted with diCi_6alkylamino, pyrrolidinyl, piperidinyl, morpholinyl;
R2 is hydrogen or Ci_6alkyloxy;
Ar is phenyl or pyridyl, both optionally substituted with one, two or three substituents selected from Chalky!, halo, nitro, cyano and Ci_6alkoxy; wherein the process comprises condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH2 (III), thus obtaining a (2-iminomethyl-lH-indol-3-yl)- amine (IV-a), which is optionally converted to an aldehyde (IV-b), and reacting the (2-imino methyl- lH-indo 1-3 -yl)-amine (IV-a) or the aldehyde (IV-b), or a mixture thereof, with a cyanoacetic acid ester (V) as represented in the following reaction scheme, wherein R1, R2 and Ar are as specified above, Lg is a leaving group and R is Ci_4alkyl:
Figure imgf000004_0001
In a further aspect, this invention concerns a process for preparing a compound of formula (IV-a) or (IV-b), or a mixture thereof, wherein the compound of formula (IV-a) or (IV-b) is as specified above, wherein said process comprises condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH2 (III), thus obtaining a (2-iminomethyl-lH-indol-3-yl)-amine (IV-a), which is optionally converted to an aldehyde (IV-b) as represented in the following reaction scheme, wherein R1, R2 and Ar are as specified above, Lg is a leaving group:
Figure imgf000004_0002
In still a further aspect, the invention concerns a process for preparing a compound of formula (I), as specified above, wherein the compound of formula (I) is prepared by condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH2 (III), and with a cyanoacetic acid ester (V), without isolation of the condensation product of the reaction between (II) and (III), to obtain the desired end product of formula (I), as outlined in the following reaction scheme wherein R1, R2, Ar, Lg and R are as specified above:
Figure imgf000005_0001
In this process variant, the conversion product from (II) with (III), i.e. intermediate (IV-a) is not isolated.
As used herein, the term Ci_4alkyl defines straight or branched chain saturated hydrocarbon radicals having from 1 to 4 carbon atoms such as methyl, ethyl, propyl, 2-propyl, butyl, 2-butyl, 2-methyl-l -propyl, 2-methyl-2-propyl. Ci_4alkyl may be a linear Ci_4alkyl (i.e. n.Ci_4alkyl, i.e. methyl, ethyl, n.propyl or n.butyl). Ci_6alkyl encompasses Ci_4alkyl and the homologues having 5 or 6 carbon atoms such as, e.g., pentyl, 2-methylbutyl, 3-methylbutyl, 2-ethylpropyl, hexyl, 2-methylpentyl, 3-methyl- pentyl, 2-ethylbutyl, and the like.
Particular subgroups of the compounds of formula (I) or of the intermediates used in the processes described herein are those wherein R1 is Ci_4alkyl, in particular methyl; or wherein R1 is linear Ci_4alkyl, in particular n.propyl or n.butyl, substituted in with diCi_6alkylamino, pyrrolidinyl, piperidinyl, morpholinyl.
Particular subgroups of the compounds of formula (I) or of the intermediates used in the processes described herein are those wherein R2 is hydrogen.
Particular subgroups of the compounds of formula (I) or of the intermediates used in the processes described herein are those wherein Ar is phenyl substituted with nitro or halo, in particular Ar is phenyl substituted with nitro, more in particular Ar is 4-nitrophenyl. In a further embodiment Ar is pyridyl substituted with halo, in particular with chloro, more in particular Ar is a group
Figure imgf000005_0002
which can be designated as 2-chloro-pyridin-5-yl or 6-chloro-3-pyridinyl.
In one embodiment Lg is halo, in particular chloro, bromo, iodo, or Lg is a triflate (or trifluoromethanesulfonate) group. The conversion from (II) with (III) to (IV-a) is an aryl animation reaction in which an aromatic halide or pseudohalide (such as a triflate) is reacted with an amine. In one embodiment this aryl amination reaction is a Buchwald-Hartwig type of reaction, which comprises reacting an aromatic halide or pseudohalide with the amine in the presence of a catalyst, in particular a palladium catalyst. Suitable palladium catalysts are palladium phosphine complexes, such as the palladium Xantphos complexes, in particular Pd(Xantphos)2 (Xantphos being 9,9'-dimethyl-4,5-bis(diphenylphosphino)- xanthene), the DPPF complexes of palladium such as (DPPF)PdCl2 (DPPF being l,l '-bis(diphenylphosphino)ferrocene), the palladium complexes of l,l'-binaphthalene- 2,2'-diylbis(diphenylphosphine) (BINAP), which can be used as such or can be prepared in situ such as by reaction of a palladium salt or palladium complex such as e.g. palladium (II) acetate (Pd(OAc)2) or (palladium)2(dibenzylideneacetone)3 (Pd2(dba)3), with BINAP. The BINAP ligand may be used in its racemic form. This reaction may be conducted in a suitable solvent such as an aromatic hydrocarbon, e.g. toluene, or an ether, e.g. tetrahydrofuran (THF), methylTHF, dioxane and the like, in the presence of a base such as an alkali metal carbonate or phosphate, e.g. Na2CO3 or K2CO3, an alkoxide base, in particular an alkali metal Ci_6alkoxide such as sodium or potassium t.butoxide (NaOtBu or KOtBu), or an organic bases such as l,8-diazabicyclo(5.4.0)undec-7-ene (DBU) or a tertiary amine (e.g. triethylamine), and in particular in the presence of cesium carbonate.
The intermediates of formula (IV-a) may be converted to the corresponding aldehydes of formula (IV-b) by treatment of the former with aqueous acid, e.g. aqueous HCl or HBr. In some circumstances, the intermediates of formula (IV-a) will be transformed to those of formula (IV-b) during the work-up of the reaction of (II) with (III). Washing with aqueous acid, for example with aqueous HCl, of the reaction mixture of the reaction of (II) with (III) may be done to remove basic components such as unreacted Ar-NH2 (III). This washing step may cause the hydrolysis of the enamine (IV-a) to the aldehyde (IV-b). Depending on the substituents this hydrolysis may be relatively slow, leading to a mixture of (IV-a) and (IV-b) or relatively quick, leading to (IV-b). It has been found that if the intermediate (IV-a) is insoluble in the reaction medium, this will result in a precipitation of (IV-a) and no or little hydrolysis to (IV-b) will occur, while where intermediate (IV-a) is soluble in the reaction medium, hydrolysis has been found to occur. The solubility of (IV-a) in the reaction medium depends upon the medium selected and on the nature of the substituents.
Where a mixture of (IV-a) and (IV-b) is obtained, said mixture can be reacted with (V) to the desired end product (I). The condensation of (IV) with cyanoacetic acid ester (V) to the end product (I) may be conducted in a reaction-inert solvent, e.g. an alcohol such as methanol, ethanol, n.propanol, isopropanol, an ether such as THF, a dipolar aprotic solvent such as DMA, DMF, DMSO, NMP, a halogenated hydrocarbon such as dichloromethane, chloroform, an aromatic hydrocarbon such as toluene, a glycol such as ethylene glycol, in the presence of a base, e.g. an amine such as piperidine, pyrrolidine, morpholine, triethylamine, diisopropylethylamine (DIPE), and the like.
The intermediates of formula (II) wherein Lg is halo may be prepared by halogenating an indole derivative of formula (VI). Suitable halogenating agents are the halogens themselves or halogenating reagents such as the halogenated succinimides, e.g. N-chloro or N-bromosuccinimide. This halogenating reaction may be conducted in a suitable solvent, such as, for example, an aromatic hydrocarbon, e.g. toluene, or an ether, e.g. tetrahydrofuran (THF), methylTHF, dioxane, and the like. Other derivatives of formula (II) can be prepared by exchanging the halo group by other leaving groups.
Figure imgf000007_0001
The intermediates of formula (II) may also be prepared by first preparing 3-bromo- indole-2-carboxaldehyde and subsequent N-alkylation of the latter with a reagent R1 -Lg, wherein R1 and Lg are as specified above and Lg in particular is a halo group such as chloro or bromo. The N-alkylation may be conducted in a suitable solvent, e.g. a dipolar aprotic solvent such as DMA, DMF, DMSO and the like in the presence of a base such as an alkali metal hydride, e.g. NaH or LiH. A nucleophilic catalyst may be added to the reaction mixture, e.g. tetrabutylammonium iodide (TBAI).
The process for preparing the compound of formula (I) of the invention starts from intermediates (II) and (III) to obtain the intermediate (IV) and subsequent condensation of (IV) with (V) to obtain compound (I). In one embodiment, all of the steps of this process may be conducted in the same solvent or solvent mixture.
In one embodiment, this process is conducted in a one-pot procedure, without isolation of intermediate (IV). The reaction of (II) with (III) is conducted in the solvent described above for this reaction, in particular a hydrocarbon such as toluene, which is removed partially or completely after which the solvent described above for the reaction of (IV) with (V), in particular an alcohol such as glycol, is added. This process variant offers the possibility to synthesize compound (I) in a quick, simple and straightforward manner.
An additional feature of the present invention comprises the fact that the intermediates of formula
ArN NH
\ R1 (IV) are novel compounds.
Therefore, in a further aspect, the invention provides a compound of formula (IV) having the chemical structure as specified above, wherein the radicals Ar, R1, and R2 and X are as defined above, and =X represents =0 or =N-Ar. Particular intermediates of formula (IV) are those wherein the radicals Ar, R1, and R2 have the specific meanings defined above. A subclass of the intermediates of formula (IV) is that wherein X is N-Ar, i.e. intermediates (IV-a). Another subclass of the intermediates of formula (IV) is that wherein X is O, i.e. intermediates (IV-b).
The process of the present invention runs in relatively high yield making it suitable for scaling up for the production of multi-kilogram and larger quantities. The process is well-suited for preparing end products having Ar groups with various substitutions, whereas the process described in WO 2005/111047 gave poor results, for example for Ar being chloropyridine. The process moreover is reproducible and economical. Further advantages that may be mentioned are the availability of starting materials and reagents that can be purchased or are easy to prepare.
All references cited in this specification are incorporated herein in their entirety.
The following examples are meant to illustrate the present invention and not to limit it thereto. Examples Example 1
Figure imgf000009_0001
N-Bromosuccinimide (NBS) (1.05 equiv., 290 mmol, 51.7 g) was added to a solution of l-methylindole-2-carboxaldehyde (1) (1.0 equiv., 276 mmol, 44.0 g) in Me-THF
(1200 ml). The reaction mixture was stirred at room temperature for 2 h. Ethyl acetate was added, the organic phase was washed with a 2 M aqueous NaOH solution and brine, dried with MgSO4, and concentrated in vacuo. The crude reaction product was recrystallized from heptane to give 2 (52.0 g, yield = 79%). 1H NMR (δ, CDCl3): 4.08 (3H, s), 7.23 - 7.27 (IH, m), 7.38 (IH, d, J = 8.4 Hz), 7.45 - 7.49 (IH, m), 7.69 (IH, d, J = 8.2 Hz), 10.13 (IH, s) ppm
An oven-dried reaction flask was charged with rac-2,2'-bis(diphenylphosphino)-l,l'- binaphthyl ((rac)-BINAP) (0.09 equiv., 3.9 mmol, 2.4 g), Pd2(dibenzylideneacetone)3 (Pd2(dba)3) (0.03 equiv., 1.3 mmol, 1.2 g), grinded Cs2CO3 (1.4 equiv., 58.6 mmol, 19.2 g) and dry toluene (140 ml), and then flushed with Ar. The reaction mixture was heated at 800C for 30 min. After cooling to room temperature, compound 2 (1.0 equiv., 42.0 mmol, 10.0 g) and 4-nitroaniline (2.1 equiv., 88.2 mmol, 12.2 g) were added. The mixture was stirred at 1100C under Ar atmosphere until no starting material was left. The reaction was monitored by LCMS. After cooling to room temperature, the reaction mixture was diluted with dichloromethane and a 3 M aqueous HCl solution was added. The resulting precipitate was filtered off, washed with a 1 M aqueous NaOH solution, water and dioxane, and dried in a vacuum to give 3 (8.3 g, yield = 48%).
A mixture of compound 3 (1.0 equiv., 1.20 mmol, 0.500 g), ethyl cyanoacetate (3.0 equiv., 3.61 mmol, 0.408 5 g) and piperidine (3.0 equiv., 3.61 mmol, 0.307 g) in glycol (10 ml) was stirred at 120 0C for 2 h. After cooling to room temperature, the precipitate was filtered off and several times washed with methanol to give compound 4 (0.414 g, yield = 48%, purity (LC) = 100%).
1H NMR (δ, DMSO-D6): 3.93 (3H, s), 6.12 (IH, d, J ~ 8 Hz), 6.89 (IH, t, J ~ 8 Hz), 7.45 (IH, t, J ~ 8 Hz), 7.64 (IH, d, J ~ 8 Hz), 7.89 (2H, d, J = 8.5 Hz), 8.54 (2H, d, J = 8.5 Hz), 8.99 (IH, s) ppm
Example 2
Figure imgf000010_0001
6 R2 = H 7 R2 = H 10 R2 = MeO 11 R2 = MeO
Preparation of Compound 7.
An oven-dried reaction flask was charged with rac-2,2'-bis(diphenylphosphino)-l,l'- binaphthyl ((rac)-BINAP) (0.09 equiv., 7.6 mmol, 4.8 g), Pd2(dibenzylideneacetone)3
(Pd2(dba)3) (0.03 equiv., 2.6 mmol, 2.4 g), grinded Cs2CO3 (1.4 equiv., 118.0 mmol,
38.3 g) and dry toluene (450 ml), and then flushed with Ar. The reaction mixture was heated at 80 0C for 30 min. After cooling to room temperature, compound 2
(1.0 equiv., 84.0 mmol, 20.0 g) and 2-amino-5-chloropyridine (2.1 equiv., 176.0 mmol,
22.7 g) were added. The mixture was stirred at 110 0C under Ar atmosphere until no more starting material was left. The reaction was monitored by LCMS. After cooling to room temperature, a 3 M aqueous HCl solution was added, the reaction mixture was extracted with dichloromethane. The combined organic phases were several times washed with a 3 M aqueous HCl solution, dried with MgSO4 and evaporated under reduced pressure. The crude product was purified by column chromatography on silica gel (gradient elution: dichloromethane / ethyl acetate 95:5 -> 90:10) affording 6 (12.O g, yield = 50%).
A mixture of compound 6 (1.0 equiv., 38.8 mmol, 11.1 g), ethyl cyanoacetate (1.1 equiv., 42.7 mmol, 4.8 g) and piperidine (1.2 equiv., 42.7 mmol, 3.6 g) in glycol was stirred at room temperature for 2 h. The precipitate was filtered off and several times washed with methanol to give 7 (6.3 g, yield = 49%, purity (LC) = 100%). 1H NMR (δ, DMSO-D6): 3.94 (3H, s), 6.21 (IH, d, J = 8.3 Hz), 6.98 (IH, t, J = 7.7 Hz), 7.48 (IH, t, J = 7.7 Hz), 7.67 (IH, d, J = 8.5 Hz), 7.93 (IH, d, J = 8.4 Hz), 8.20 (IH, dd, J = 8.4, 2.4 Hz), 8.69 (IH, d, J = 2.4 Hz), 9.02 (IH, s) ppm.
Preparation of Compound 11.
Following the same procedures and starting from the methoxy analog 8 (R2 is methoxy, -OMe in the above scheme) there was also prepared compound 11.
Example 3
Figure imgf000012_0001
15
HCI, H2O
Figure imgf000012_0002
N-Bromosuccinimide (NBS) (1.2 equiv., 69.4 mmol, 12.4 g) was added to a solution of indole-2-carboxaldehyde (12) [Agnusdei, M.; Bandini, M.; Melloni, A., Alfonso; Umani-Ronchi, A. J. Org. Chem. 2003, 68, 7126-7129] (1.0 equiv., 57.9 mmol, 8.4 g) in Me-THF (500 ml). The reaction mixture was stirred at room temperature for 2 h. Ethyl acetate was added, the organic phase was washed with a 2 M aqueous NaOH solution and brine, dried with MgSO4 and concentrated in vacuo. The crude reaction product was recrystallized from heptane to give 3-bromo-2-carboxaldehyde (13) (8.4 g, yield = 65%).
1H NMR (δ, DMSO-D6): 7.24 (IH, t, J ~ 8 Hz), 7.38 - 7.52 (2H, m), 7.63 (IH, d, J = 8.1 Hz), 9.94 (IH, s), 12.39 (IH, s(br)) ppm Sodium hydride (3.0 equiv., 13.4 mmol, 0.536 g (60%)) was portion wise added to a solution of 3-bromo-2-carboxaldehyde (13) (1.0 equiv., 4.46 mmol, 1.000 g) and tetrabutylammonium iodide (TBAI) (0.2 equiv., 0.89 mmol, 0.893 g) in dry DMF under Ar atmosphere, the reaction mixture was stirred at room temperature for 1 h. l-(2-Chloroethyl)pyrrolidine hydrochloride (1.5 equiv., 6.7 mmol, 1.000 g) was added and the reaction mixture was stirred at 50 0C under Ar atmosphere until no more starting material was left. The mixture was concentrated under reduced pressure and partitioned between dichloromethane and water. The aqueous layer was further extracted with dichloromethane, the combined organic phases were dried with MgSO4 and evaporated in vacuo. The crude product was purified by column chromatography on silica gel (eluent: dichloromethane / methanol 98:2) to give 14 (1.3 g, yield = 91%). 1U NMR (δ, CDC13): 1.80 - 2.20 (4H, m), 2.76 - 2.89 (4H, m), 2.94 (2H, dd, J = 7.8, 7.8 Hz) , 4.81 (2H, dd, J = 7.8, 7.8 Hz), 7.27 (2H, t, J ~ 8 Hz), 7.49 (IH, t, J ~ 8 Hz), 7.58 (lH,d, J ~ 8 Hz), 7.70 (IH, d, J ~ 8 Hz), 10.10 (IH, s) ppm
An oven-dried reaction flask was charged with rac-2,2'-bis(diphenylphosphino)-l,l'- binaphthyl ((rac)-BINAP) (0.12 equiv., 0.19 mmol, 0.116 g), Pd2(dibenzylidene- acetone)3 (Pd2(dba)3) (0.04 equiv., 0.06 mmol, 0.057 g), grinded Cs2CO3 (1.4 equiv., 2.18 mmol, 0.710 g) and dry toluene (50 ml), and then flushed with Ar. The reaction mixture was heated at 80 0C for 30 min. After cooling to room temperature, compound 14 (1.0 equiv., 1.56 mmol, 0.500 g) and 4-nitroaniline (2.1 equiv., 3.27 mmol, 0.452 g) were added. The mixture was stirred at 110 0C under Ar atmosphere for 3 h. The reaction mixture was partitioned between dichloromethane and a 3 M aqueous HCl solution. The organic phase was several times extracted with a 3 M aqueous HCl solution. The combined water phases were basifϊed with a saturated aqueous NaHCO3 solution and extracted with chloroform. The chloroform phase was dried with MgSO4 and evaporated under reduced pressure. The resulting residue, containing a mixture of compounds 15, 16 and 4-nitroaniline, was dissolved in glycol (8 ml). Ethyl cyanoacetate (1.0 equiv., 1.56 mmol, 0.176 g) and piperidine (1.0 equiv., 1.56 mmol, 0.133 g) were added, the reaction mixture was stirred at room temperature for 2 h. The precipitate was filtered off and washed with isopropanol and isopropylether to give 17 (0.09 g, yield = 14% starting from 14, purity (LC) = 99%).
1H NMR (δ, DMSO-D6): 1.50 - 1.80 (4H, m), 2.35 - 2.90 (6H, m), 4.40 - 4.70 (2H, m), 6.12 (IH, d, J = 8.1 Hz ), 6.75 - 7.00 (IH, m), 7.30 - 7.50 (IH, m ), 7.67 (IH, d, J = 8.3 Hz), 7.91 (2H, d, J = 8.2 Hz ), 8.55 (IH, d, J = 8.2 Hz), 8.97 (IH, s) ppm.

Claims

Claims
1. A process for preparing a compound of formula:
Figure imgf000014_0001
or a salt thereof, wherein R1 is Ci_6alkyl optionally substituted with diCi_6alkylamino, pyrrolidinyl, piperidinyl, morpholinyl;
R2 is hydrogen or Ci_4alkyloxy; Ar is phenyl or pyridyl, both optionally substituted with one, two or three substituents selected from C^alkyl, halo, nitro, cyano and Ci_6alkoxy; wherein the process comprises condensing a 1 -substituted indole-2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH2 (III), thus obtaining a (2-iminomethyl-lH- indol-3-yl)-amine (IV-a), which is optionally converted to an aldehyde (IV-b), and reacting the (2-imino methyl- lH-indo 1-3 -yl)-amine (IV-a) or the aldehyde (IV-b), or a mixture thereof, with a cyanoacetic acid ester (V) as represented in the following reaction scheme, wherein R1, R2 and Ar are as specified above, Lg is a leaving group and R is Ci_4alkyl:
Figure imgf000014_0002
2. A process for preparing a compound of formula (IV-a) or (IV-b), or a mixture thereof, wherein the compound of formula (IV-a) or (IV-b) is as specified above, wherein said process comprises condensing a 1 -substituted indole- 2-carboxaldehyde of formula (II) with an aromatic amine Ar-NH2 (III), thus obtaining a (2-imino methyl- lH-indo 1-3 -yl)-amine (IV-a), which is optionally converted to an aldehyde (IV-b) as represented in the following reaction scheme, wherein R1, R2 and Ar are as specified above, Lg is a leaving group:
Figure imgf000015_0001
3. A process according to claim 1 wherein the process is conducted without isolation of intermediate (IV-a) or (IV-b).
4. A process according to any of claims 1-3 wherein R1 is Ci_4alkyl, in particular methyl; or wherein R1 is linear Ci_4alkyl, in particular n.propyl or n.butyl, substituted in with diCi_6alkylamino, pyrrolidinyl, piperidinyl, morpholinyl.
5. A process according to any of claims 1-3 wherein R2 is hydrogen.
6. A process according to any of claims 1-3 wherein Ar is phenyl substituted with nitro or halo, in particular Ar is phenyl substituted with nitro, more in particular Ar is 4-nitrophenyl; or Ar is pyridyl substituted with halo, in particular with chloro, more in particular Ar is 6-chloro-3-pyridinyl.
7. A process according to any of claims 1-3 wherein Lg is halo, in particular bromo, iodo, or Lg is a triflate group.
8. A process according to any of claims 1-3 wherein R is methyl or ethyl.
9. A compound of formula
Figure imgf000016_0001
wherein R , 1 , r R> 2 , X and Ar are as defined in claim 1.
10. A compound according to claim 9 wherein X is N-Ar and one or more of R1, R2 and Ar are as defined in claims 4, 5 and 6.
PCT/EP2007/060288 2006-09-29 2007-09-28 Process for preparing 2-oxo-2,5-dihydro-1h-pyrido[3,2-b]indole-3-carbonitriles WO2008037783A1 (en)

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