WO2007038868A2 - Nouveau compose d'enediyne et ses utilisations - Google Patents
Nouveau compose d'enediyne et ses utilisations Download PDFInfo
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- WO2007038868A2 WO2007038868A2 PCT/CA2006/001634 CA2006001634W WO2007038868A2 WO 2007038868 A2 WO2007038868 A2 WO 2007038868A2 CA 2006001634 W CA2006001634 W CA 2006001634W WO 2007038868 A2 WO2007038868 A2 WO 2007038868A2
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- WIPO (PCT)
- Prior art keywords
- analogue
- antibody
- compound
- carbon
- uncialamycin
- Prior art date
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- 150000001875 compounds Chemical class 0.000 title claims abstract description 37
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- 125000002252 acyl group Chemical group 0.000 claims description 3
- OBGWIHKWGGEOEV-WJPOXRCESA-N (1S,17S,20Z,24R,26R)-4,24-dihydroxy-26-[(1R)-1-hydroxyethyl]-25-oxa-16-azahexacyclo[15.7.2.01,26.02,15.05,14.07,12]hexacosa-2,4,7,9,11,14,20-heptaen-18,22-diyne-6,13-dione Chemical compound O[C@@H]1C#C\C=C/C#C[C@@H]2NC(C=3C(=O)C4=CC=CC=C4C(=O)C=3C(O)=C3)=C3[C@@]31O[C@]32[C@H](O)C OBGWIHKWGGEOEV-WJPOXRCESA-N 0.000 abstract description 67
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- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical group [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 3
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- 239000013612 plasmid Substances 0.000 description 3
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- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 2
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- GEZVBXBTXVWFEI-NOKMTCIGSA-N CC(C)[C@@](C([C@@H](C#C/C=C\C#C1)O)c2cc(O)c3C(c4c5cccc4)=O)(C1N(C)c2c3C5=O)OC Chemical compound CC(C)[C@@](C([C@@H](C#C/C=C\C#C1)O)c2cc(O)c3C(c4c5cccc4)=O)(C1N(C)c2c3C5=O)OC GEZVBXBTXVWFEI-NOKMTCIGSA-N 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D491/00—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
- C07D491/02—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
- C07D491/08—Bridged systems
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/04—Antibacterial agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
Definitions
- This application relates to a novel enediyne compound, analogues of the compound, compositions containing the compound, and uses thereof.
- Antibiotic resistance is an increasing problem in the treatment of bacterial infections. Hospital-acquired (nosocomial) infections are particularly difficult to treat due to bacteria acquiring resistance to commonly used drugs, often as a result of continued exposure of bacteria to multiple antibiotics. Such infections can be particularly troubling for patients who are immunocompromised or otherwise weakened from illness. As many bacteria are increasingly becoming resistant to known drugs, the need for novel antibiotics is also increasing.
- the invention relates to the enediyne compound uncialamycin having the formula:
- the invention relates to analogues of uncialamycin having the following formula:
- an analogue of uncialamycin comprises the formula
- the invention relates to salts and prodrugs of uncialamycin and its analogues.
- the invention also relates to methods of making analogues of uncialamycin.
- the invention relates to compositions comprising an effective amount of uncialamycin, or analogues, salts, or prodrugs thereof, and a pharmaceutically acceptable carrier.
- Such compositions include orally administrable, injectable, and topically applicable compositions.
- Such compositions also include antibody conjugates comprising uncialamycin, or analogues, salts, or prodrugs thereof, conjugated to an antibody through a linker.
- Such compositions also include other useful forms of uncialamycin, or analogues, salts, or prodrugs thereof, such as powders and solutions.
- the invention relates to methods of administering the compositions by administering effective amounts of uncialamycin.
- the invention relates to methods of using the compound or compositions thereof as antibiotics.
- the invention also relates to methods of using the compound or compositions as bacteriostatic or bactericidal agents to inhibit bacterial growth or to kill bacteria.
- the bacteria include Staphylococcus aureus, Escherichia coli, and Burkholderia cepacia complex.
- the compound or compositions can also be used against multidrug resistant bacteria.
- the invention relates to methods of using the compound or compositions thereof as antitumor and anticancer agents.
- Figure 1 depicts HMBC correlations used to identify two major fragments A and B of uncialamycin (1).
- Figure 2 is a photograph of pBR322 plasmid DNA samples incubated with uncialamycin for 15 minutes, analyzed by polyacrylamide gel electrophoresis.
- Figure 3 is a photograph of pBR322 plasmid DNA samples incubated with uncialamycin for 3 hours, analyzed by polyacrylamide gel electrophoresis.
- the invention relates to a novel enediyne compound.
- the compound is uncialamycin and has the following structure:
- the invention relates to analogues of uncialamycin having the following formula:
- X can be H and Y can
- the analogue comprises the formula
- the analogue comprises the formula
- R 1 , R 2 , and R 4 are acetyl groups (Ac) and R 3 is H.
- Ri and R 4 are acetyl groups (Ac), and R 2 and R 3 are H.
- R 2 and R 4 are acetyl groups (Ac), and Ri and R 3 are H.
- R 4 is an acetyl group (Ac), and Ri , R 2 and R 3 are H.
- R 4 is an acyl group, and R 1 , R 2 and R 3 are H.
- R 4 is a linker to an antibody, and R 1 , R 2 and R 3 are H.
- R 4 is a linker to an antibody
- Ri and R 2 are acetyl groups (Ac)
- R 3 is H.
- R b R 2 , and R 4 are acetyl groups (Ac)
- R 3 is a linker to an antibody.
- an analogue of uncialamycin comprises the formula
- the invention in another aspect, relates to salts and prodrugs of uncialamycin and its analogues.
- the invention includes organometallic derivatives of uncialamycin and its analogues.
- the invention also relates to methods of making analogues of uncialamycin.
- Various analogues of uncialamycin can be derived from uncialamycin using any of the following schemes or any combinations thereof.
- R may be methyl or a simple alkyl such as ethyl, propyl, butyl, etc. Many other R substituents are also possible.
- R 3 may be as defined above, for example.
- analogues with different acyl or alkyl groups can be created by using different acylation or alkylation reagents.
- compositions comprising an effective amount of uncialamycin and pharmaceutically acceptable carriers.
- Such compositions include compositions comprising analogues, salts, or prodrugs of uncialamycin and pharmaceutically acceptable carriers.
- An effective amount of uncialamycin is an amount that is effective to treat a bacterial infection, to inhibit bacterial growth, to kill bacteria, to treat tumors, to inhibit growth of tumor cells, to kill tumor cells, to treat cancer, to inhibit cancers cells, or to kill cancer cells.
- Suitable pharmaceutically acceptable carriers are also known to persons skilled in the art, including, but not limited to, suspending agents, flavorings, sweeteners, colorants, coatings, etc.
- compositions can be orally administrable, injectable, topically applied, or supplied in other suitable forms.
- Orally administrable compositions include compositions in the form of a tablet, a powder, a suspension, an emulsion, a capsule, a granule, a lozenge, a pill, a liquid, a syrup, or any other appropriate orally administrable form.
- the injectable compositions include compositions in the form of a liquid, a suspension, a solution, or any other suitable injectable form.
- the topical compositions include compositions in the form of a paste, an ointment, a liquid, a powder, a plaster, a suppository, an aerosol, a liniment, a lotion, an enema, an emulsion, or any other suitable topical form.
- Other forms of administering or otherwise providing the compositions are also contemplated, such as powder forms and solutions.
- compositions also include antibody conjugates comprising uncialamycin, or analogues, salts, or prodrugs thereof, conjugated to an antibody.
- the antibodies of these conjugates can be monoclonal antibodies, or any other suitable antibodies, which target bacterial antigens, tumor cell antigens, cancer cell antigens, or any other suitable antigens.
- Such conjugates can assist in delivering uncialamycin, or analogues, salts, or prodrugs thereof, to sites of infection or sites of tumor or cancer growth.
- Uncialamycin, or analogues, salts, or prodrugs thereof can be bonded to antibodies by any bonding method known to persons skilled in the art including, but not limited to, non-covalent bonds and covalent bonds, including cleavable and non-cleavable linkers. Such bonds include, but are not limited to, peptide linkers, saccharide linkers, sulfide linkers, etc. [0030] In another aspect, the invention relates to methods of using uncialamycin or compositions thereof. Uncialamycin demonstrates inhibitory activity against both gram positive and gram negative bacteria, but does not exhibit inhibitory activity against yeasts.
- the invention relates to methods of using uncialamycin, or compositions thereof, as an antibiotic to treat bacterial infections in humans or other animals having a bacterial infection.
- uncialamycin, or compositions thereof can be used as a bacteriostatic agent to inhibit bacterial growth, either in vitro or in vivo.
- uncialamycin, or compositions thereof can be used as a bactericidal agent to kill bacteria, either in vitro or in vivo.
- the bacteria can comprise gram positive or gram negative bacteria, including, but not limited to, Staphylococcus aureus, Escherichia coli and Burkholderia cepacia.
- uncialamycin is effective against Burkholderia cepacia complex (Bcc), a group of nine species of Gram-negative non-sporulating bacilli that have emerged as serious opportunistic human pathogens in cystic fibrosis and immunocompromised patients. Because uncialamycin is a novel antibiotic, in another aspect of the invention, uncialamycin, or compositions thereof, are also useful to treat antibiotic resistant bacteria, including multidrug resistant (MDR) bacteria.
- Mcc Burkholderia cepacia complex
- the invention also relates to methods of using uncialamycin or compositions thereof to treat tumors in humans or other animals in need of treatment, to inhibit growth of tumor cells in vivo or in vitro, to kill tumor cells in vivo or in vitro, to treat cancer in humans or other animals in need of treatment, to inhibit growth of cancer cells in vivo or in vitro, or to kill cancer cells in vivo or in vitro.
- the invention also relates to methods of administering the compositions such that uncialamycin, or analogues, salts, or prodrugs thereof, are administered in a therapeutically effective dose. Such doses would be well within the skill of a physician or other persons skilled in the art to determine.
- the producing strain was extracted from the surface of the lichen Cladonia uncialis collected near Pitt River, British Columbia. Characterisation by 16S RNA sequencing showed the strain to be related, but not identical, to Streptomyces cyanogenus. Antibiotic activity of the strain was assayed by cutting plugs from solid agar cultures of the strain and placing them on lawns of tester strains of bacteria. Good inhibitory activity was detected against Gram-positive and Gram-negative bacteria (including Bcc), but not against yeasts.
- the EtOAc soluble material was fractionated by sequential application of flash C- 18 reversed-phase chromatography (eluent: step gradient from H 2 O to MeOH) and reversed-phase HPLC (column-Inertsil ODS-2; eluent: CH 3 CN/H 2 O 40:60) to give pure uncialamycin (1) ( ⁇ 300 ⁇ g) as a bright purple [UV(MeOH): ⁇ max nm ( ⁇ ) 206 (25,000), 254 (33,000), 280 (shoulder), 320 (shoulder), 539 (9,400)], optically active ([ ⁇ ] D +3,300 (c 0.005, MeOH)) oil.
- This set of four HMBC correlations indicated that the two oxygenated carbons bridged the C- 17 and C-24 carbons to form a ten membered ring (C- 16 to C-25) containing the enediyne substructure.
- HMBC correlations observed between the proton resonance at ⁇ 8.23 (H-6) and a carbon resonance at 187.0 (C-4) and between the proton resonance at 8.24 (H-8) and a carbon resonance at 182.2 (C-11) suggested that the other two subsituents on the benzene ring were quinone carbonyls.
- Fragments A and B shown in Figure 1 accounted for all of the carbon, hydrogen, and nitrogen atoms in the molecular formula of uncialamycin (1), but contained one extra oxygen atom.
- the two carbonyl carbons of fragment B (C-4 and C-I l) had to be attached to the two substituted aromatic carbons (C-3 and C- 12) of fragment A.
- the two oxygentated carbons C- 16 and C-25 had to be bridged by an epoxide to account for the number of oxygen atoms and sites of unsaturation required by the molecular formula of 1. This implied that the C- 13 oxygen substituent had to be part of a phenol functionality that would engage in intramolecular hydrogen bonding with the C-I l carbonyl consistent with the observed OH chemical shift of ⁇ 13.2.
- Comparison of the additional NMR assigments reported for dynemicin A (2) and its triacetate derivative provided further strong support for the assigned structure of uncialamycin
- Uncialamycin (1) shows potent in vitro antibacterial activity against Staphylococcus aureus (Minimal Inhibitory Concentration (MIC) 0.0000064 ⁇ g/mL), Escherichia coli (MIC 0.002 ⁇ g/mL) and Burkholderia cepacia (MIC 0.001 ⁇ g/mL).
- MIC Minimum Inhibitory Concentration
- B. cepacia K56-2, C2822, CEP559, C3430, and CEP1016 were sensitive to uncialamycin at low concentrations.
- Candida albicans and Sacchromyces cerevisiae were not sensitive at relatively high concentrations of uncialamycin.
- MICs were determined as follows.
- Lane 1 control (no drug) + DTT
- Lane 2 control (no drug) +NADPH
- Lane 3 20 ⁇ M drug
- Lane 4 20 ⁇ M drug +NADPH
- Lane 5 20 ⁇ M drug + DTT
- lane 6 10 ⁇ M drug + DTT
- lanes 7 and 8 contain size standard markers. Lanes 4, 5, and 6 show degradation of DNA.
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Abstract
Cette invention concerne un nouveau composé d'énédiyne, l'uncialamycine, et ses analogues. Elle concerne également des méthodes d'utilisation du composé pour traiter des infections bactériennes, inhiber la croissance bactérienne, et tuer des bactéries. Le composé de l'invention peut également être utilisé pour traiter des tumeurs, empêcher la croissance de cellules tumorales, tuer des cellules tumorales, traiter des cancers, empêcher la croissance de cellules cancéreuses, et tuer des cellules cancéreuses. L'invention concerne aussi des méthodes de production d'analogues d'uncialamycine. Elle concerne en outre des compositions comprenant l'uncialamycine et des méthodes d'administration des compositions de l'invention.
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