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WO2005092059A3 - Compositions for use in identification of viral hemorrhagic fever viruses - Google Patents

Compositions for use in identification of viral hemorrhagic fever viruses Download PDF

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Publication number
WO2005092059A3
WO2005092059A3 PCT/US2005/009557 US2005009557W WO2005092059A3 WO 2005092059 A3 WO2005092059 A3 WO 2005092059A3 US 2005009557 W US2005009557 W US 2005009557W WO 2005092059 A3 WO2005092059 A3 WO 2005092059A3
Authority
WO
WIPO (PCT)
Prior art keywords
compositions
identification
viral hemorrhagic
hemorrhagic fever
fever viruses
Prior art date
Application number
PCT/US2005/009557
Other languages
French (fr)
Other versions
WO2005092059A2 (en
Inventor
Rangarajan Sampath
Thomas A Hall
Mark W Eshoo
Original Assignee
Isis Pharmaceuticals Inc
Rangarajan Sampath
Thomas A Hall
Mark W Eshoo
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Isis Pharmaceuticals Inc, Rangarajan Sampath, Thomas A Hall, Mark W Eshoo filed Critical Isis Pharmaceuticals Inc
Priority to EP05751872A priority Critical patent/EP1735465B1/en
Priority to AT05751872T priority patent/ATE517194T1/en
Priority to CA2560946A priority patent/CA2560946C/en
Priority to JP2007505111A priority patent/JP4937110B2/en
Publication of WO2005092059A2 publication Critical patent/WO2005092059A2/en
Publication of WO2005092059A3 publication Critical patent/WO2005092059A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Virology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Saccharide Compounds (AREA)

Abstract

The present invention provides oligonucleotide primers, compositions, and kits containing the same for rapid identification of viruses that cause viral hemorrhagic fevers by amplification of a segment of viral nucleic acid followed by molecular mass analysis.
PCT/US2005/009557 2004-03-22 2005-03-22 Compositions for use in identification of viral hemorrhagic fever viruses WO2005092059A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
EP05751872A EP1735465B1 (en) 2004-03-22 2005-03-22 Compositions for use in identification of viral hemorrhagic fever viruses
AT05751872T ATE517194T1 (en) 2004-03-22 2005-03-22 COMPOSITIONS FOR USE IN DETERMINING HEMORRHAGIC FEVER VIRUSES
CA2560946A CA2560946C (en) 2004-03-22 2005-03-22 Compositions for use in identification of viral hemorrhagic fever viruses
JP2007505111A JP4937110B2 (en) 2004-03-22 2005-03-22 Composition used for identification of viral hemorrhagic fever virus

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US55552004P 2004-03-22 2004-03-22
US60/555,520 2004-03-22

Publications (2)

Publication Number Publication Date
WO2005092059A2 WO2005092059A2 (en) 2005-10-06
WO2005092059A3 true WO2005092059A3 (en) 2005-12-01

Family

ID=35056768

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2005/009557 WO2005092059A2 (en) 2004-03-22 2005-03-22 Compositions for use in identification of viral hemorrhagic fever viruses

Country Status (6)

Country Link
US (1) US7312036B2 (en)
EP (1) EP1735465B1 (en)
JP (1) JP4937110B2 (en)
AT (1) ATE517194T1 (en)
CA (1) CA2560946C (en)
WO (1) WO2005092059A2 (en)

Families Citing this family (60)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
WO2004060278A2 (en) 2002-12-06 2004-07-22 Isis Pharmaceuticals, Inc. Methods for rapid identification of pathogens in humans and animals
US20040121335A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US7718354B2 (en) 2001-03-02 2010-05-18 Ibis Biosciences, Inc. Methods for rapid identification of pathogens in humans and animals
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
US8046171B2 (en) 2003-04-18 2011-10-25 Ibis Biosciences, Inc. Methods and apparatus for genetic evaluation
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US20120122103A1 (en) 2003-09-11 2012-05-17 Rangarajan Sampath Compositions for use in identification of bacteria
US20100035239A1 (en) * 2003-09-11 2010-02-11 Isis Pharmaceuticals, Inc. Compositions for use in identification of bacteria
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
US8119336B2 (en) 2004-03-03 2012-02-21 Ibis Biosciences, Inc. Compositions for use in identification of alphaviruses
ES2641832T3 (en) 2004-05-24 2017-11-14 Ibis Biosciences, Inc. Mass spectrometry with selective ion filtration by setting digital thresholds
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (en) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Methods for rapid identification of recombinant organisms
US8045599B2 (en) * 2005-02-17 2011-10-25 Sony Corporation Selection of training sequences for multiple-in multiple-out transmissions
US8182992B2 (en) 2005-03-03 2012-05-22 Ibis Biosciences, Inc. Compositions for use in identification of adventitious viruses
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
US8026084B2 (en) 2005-07-21 2011-09-27 Ibis Biosciences, Inc. Methods for rapid identification and quantitation of nucleic acid variants
US20080003574A1 (en) * 2006-06-28 2008-01-03 Sigma-Aldrich Co. Kits for RNA extraction
US9149473B2 (en) 2006-09-14 2015-10-06 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
EP2094846B8 (en) * 2006-12-13 2013-10-16 Roche Diagnostics GmbH Use of tde for the isolation of nucleic acids
US8871471B2 (en) 2007-02-23 2014-10-28 Ibis Biosciences, Inc. Methods for rapid forensic DNA analysis
WO2008118809A1 (en) * 2007-03-23 2008-10-02 Ibis Biosciences, Inc. Compositions for use in identification of mixed populations of bioagents
EP2137523A1 (en) 2007-04-04 2009-12-30 Network Biosystems, Inc. Plastic microfluidic separation and detection platforms
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
DE102007057698A1 (en) * 2007-11-30 2009-06-04 Advalytix Ag Method for determining the presence and / or absence of several target sequences in a biological sample
EP2240201B1 (en) * 2007-12-21 2015-04-22 The Government of The United States of America as represented by the Secretary of The Department of Health and Human Services, Centers for Disease Recombinant rift valley fever (rvf) viruses and methods of use
WO2009131728A2 (en) * 2008-01-29 2009-10-29 Ibis Biosciences, Inc. Compositions for use in identification of picornaviruses
WO2009155103A2 (en) * 2008-05-30 2009-12-23 Ibis Biosciences, Inc. Compositions for use in identification of tick-borne pathogens
US20110151437A1 (en) * 2008-06-02 2011-06-23 Ibis Biosciences, Inc. Compositions for use in identification of adventitious viruses
EP2344893B1 (en) 2008-09-16 2014-10-15 Ibis Biosciences, Inc. Microplate handling systems and methods
EP2349549B1 (en) 2008-09-16 2012-07-18 Ibis Biosciences, Inc. Mixing cartridges, mixing stations, and related kits, and system
US8148163B2 (en) 2008-09-16 2012-04-03 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
WO2010093943A1 (en) 2009-02-12 2010-08-19 Ibis Biosciences, Inc. Ionization probe assemblies
WO2010114842A1 (en) 2009-03-30 2010-10-07 Ibis Biosciences, Inc. Bioagent detection systems, devices, and methods
US9550985B2 (en) 2009-06-15 2017-01-24 Netbio, Inc. Methods for forensic DNA quantitation
WO2011008971A1 (en) 2009-07-17 2011-01-20 Ibis Biosciences, Inc. Lift and mount apparatus
EP2454000A4 (en) 2009-07-17 2016-08-10 Ibis Biosciences Inc Systems for bioagent identification
US20120183951A1 (en) * 2009-07-21 2012-07-19 Rangarajan Sampath Compositions for use in identification of arenaviruses
US9416409B2 (en) 2009-07-31 2016-08-16 Ibis Biosciences, Inc. Capture primers and capture sequence linked solid supports for molecular diagnostic tests
JP6057460B2 (en) * 2009-08-31 2017-01-11 ジェン−プローブ・インコーポレーテッド Dengue virus assay
US9890408B2 (en) 2009-10-15 2018-02-13 Ibis Biosciences, Inc. Multiple displacement amplification
ES2626411T3 (en) 2010-03-10 2017-07-25 Ibis Biosciences, Inc. Single-chain circular nucleic acid production
US9068017B2 (en) 2010-04-08 2015-06-30 Ibis Biosciences, Inc. Compositions and methods for inhibiting terminal transferase activity
AU2012253271A1 (en) 2011-05-12 2014-01-09 Netbio, Inc. Methods and compositions for rapid multiplex amplification of STR loci
WO2013036603A1 (en) 2011-09-06 2013-03-14 Ibis Biosciences, Inc. Sample preparation methods
US9970061B2 (en) 2011-12-27 2018-05-15 Ibis Biosciences, Inc. Bioagent detection oligonucleotides
CN104937390B (en) 2012-09-26 2018-09-21 艾比斯生物科学公司 swab interface for microfluidic device
CN104560982B (en) * 2015-01-28 2018-05-18 中国医科大学附属第一医院 What species and abundance compared between different genera microorganism is artificial exogenous with reference to molecule
EP3098326A1 (en) * 2015-05-27 2016-11-30 Institut Pasteur Isothermal amplification assay for rapid and accurate detection of hemorrhagic fever viruses in clinical samples
US11459619B2 (en) 2016-02-08 2022-10-04 The Johns Hopkins University Handheld nucleic acid-based assay for rapid identification
JPWO2021200717A1 (en) * 2020-03-31 2021-10-07

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030104410A1 (en) * 2001-03-16 2003-06-05 Affymetrix, Inc. Human microarray

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5605798A (en) 1993-01-07 1997-02-25 Sequenom, Inc. DNA diagnostic based on mass spectrometry
GB9810442D0 (en) * 1998-05-16 1998-07-15 Univ Manchester Yeast
DE10150121B4 (en) * 2001-10-11 2005-12-01 Bernhard-Nocht-Institut für Tropenmedizin Real-time detection of DNA amplification products
AU2003269809A1 (en) * 2002-04-01 2003-12-12 Isis Pharmaceuticals, Inc. Method for rapid detection and identification of viral bioagents
AU2003240150B2 (en) * 2002-05-29 2008-10-30 Aresa Biodetection Aps Reporter system for plants
ATE373729T1 (en) * 2003-07-03 2007-10-15 Danmarks Og Groenlands Geol Un METHOD FOR SELECTIVE DETECTION OF A TARGET NUCLEIC ACID

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030104410A1 (en) * 2001-03-16 2003-06-05 Affymetrix, Inc. Human microarray

Also Published As

Publication number Publication date
US20060057605A1 (en) 2006-03-16
JP2008504017A (en) 2008-02-14
JP4937110B2 (en) 2012-05-23
US7312036B2 (en) 2007-12-25
EP1735465A4 (en) 2008-03-12
CA2560946A1 (en) 2005-10-06
EP1735465B1 (en) 2011-07-20
ATE517194T1 (en) 2011-08-15
EP1735465A2 (en) 2006-12-27
CA2560946C (en) 2013-01-15
WO2005092059A2 (en) 2005-10-06

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