WO2003033437A2 - Procede de fabrication d'inhibiteurs de la neuraminidase au moyen de la chimie combinatoire dynamique et composes ainsi obtenus - Google Patents
Procede de fabrication d'inhibiteurs de la neuraminidase au moyen de la chimie combinatoire dynamique et composes ainsi obtenus Download PDFInfo
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- WO2003033437A2 WO2003033437A2 PCT/EP2002/011526 EP0211526W WO03033437A2 WO 2003033437 A2 WO2003033437 A2 WO 2003033437A2 EP 0211526 W EP0211526 W EP 0211526W WO 03033437 A2 WO03033437 A2 WO 03033437A2
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- WO
- WIPO (PCT)
- Prior art keywords
- neuraminidase
- groups
- formula
- group
- compounds
- Prior art date
Links
- 150000001875 compounds Chemical class 0.000 title claims abstract description 76
- 238000000034 method Methods 0.000 title claims abstract description 35
- 239000002911 sialidase inhibitor Substances 0.000 title description 11
- 229940042406 direct acting antivirals neuraminidase inhibitors Drugs 0.000 title description 10
- 108010006232 Neuraminidase Proteins 0.000 claims abstract description 39
- 102000005348 Neuraminidase Human genes 0.000 claims abstract description 39
- 230000015572 biosynthetic process Effects 0.000 claims abstract description 17
- 206010022000 influenza Diseases 0.000 claims abstract description 14
- 125000005647 linker group Chemical group 0.000 claims abstract description 10
- 230000002441 reversible effect Effects 0.000 claims abstract description 10
- 230000000694 effects Effects 0.000 claims description 20
- 239000000203 mixture Substances 0.000 claims description 20
- 125000001424 substituent group Chemical group 0.000 claims description 16
- 239000011541 reaction mixture Substances 0.000 claims description 15
- 239000003814 drug Substances 0.000 claims description 11
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 8
- 230000002401 inhibitory effect Effects 0.000 claims description 7
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 claims description 5
- 229910052739 hydrogen Inorganic materials 0.000 claims description 5
- 239000001257 hydrogen Substances 0.000 claims description 5
- 125000004435 hydrogen atom Chemical group [H]* 0.000 claims description 5
- 241000124008 Mammalia Species 0.000 claims description 4
- 125000000217 alkyl group Chemical group 0.000 claims description 4
- 230000005764 inhibitory process Effects 0.000 claims description 4
- 150000003839 salts Chemical class 0.000 claims description 4
- 239000012453 solvate Substances 0.000 claims description 4
- 125000003118 aryl group Chemical group 0.000 claims description 3
- 239000003937 drug carrier Substances 0.000 claims description 3
- 125000002795 guanidino group Chemical group C(N)(=N)N* 0.000 claims description 3
- 229910052757 nitrogen Inorganic materials 0.000 claims description 3
- 125000004008 6 membered carbocyclic group Chemical group 0.000 claims description 2
- 125000005842 heteroatom Chemical group 0.000 claims description 2
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims description 2
- 238000004519 manufacturing process Methods 0.000 claims description 2
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 claims description 2
- 229910052760 oxygen Inorganic materials 0.000 claims description 2
- 125000003538 pentan-3-yl group Chemical group [H]C([H])([H])C([H])([H])C([H])(*)C([H])([H])C([H])([H])[H] 0.000 claims description 2
- 229910052717 sulfur Inorganic materials 0.000 claims description 2
- MZWJKOOGSHJTRL-UHFFFAOYSA-N 4-acetamido-3-(cyclohex-3-en-1-ylmethylamino)-5-(diaminomethylideneamino)cyclohexene-1-carboxylic acid Chemical compound CC(=O)NC1C(N=C(N)N)CC(C(O)=O)=CC1NCC1CC=CCC1 MZWJKOOGSHJTRL-UHFFFAOYSA-N 0.000 claims 1
- 125000003358 C2-C20 alkenyl group Chemical group 0.000 claims 1
- UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 claims 1
- 239000007858 starting material Substances 0.000 claims 1
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 24
- 239000003112 inhibitor Substances 0.000 description 23
- 125000002485 formyl group Chemical class [H]C(*)=O 0.000 description 17
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 13
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 12
- 102000004190 Enzymes Human genes 0.000 description 11
- 108090000790 Enzymes Proteins 0.000 description 11
- 241000700605 Viruses Species 0.000 description 10
- 238000006243 chemical reaction Methods 0.000 description 10
- 239000000047 product Substances 0.000 description 10
- 239000000243 solution Substances 0.000 description 10
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 9
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 9
- 238000002474 experimental method Methods 0.000 description 9
- CSNNHWWHGAXBCP-UHFFFAOYSA-L Magnesium sulfate Chemical compound [Mg+2].[O-][S+2]([O-])([O-])[O-] CSNNHWWHGAXBCP-UHFFFAOYSA-L 0.000 description 8
- 208000015181 infectious disease Diseases 0.000 description 8
- 238000003786 synthesis reaction Methods 0.000 description 8
- 241000699670 Mus sp. Species 0.000 description 7
- 125000003277 amino group Chemical group 0.000 description 7
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- 241000894007 species Species 0.000 description 7
- -1 tinctures Substances 0.000 description 7
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- 238000004458 analytical method Methods 0.000 description 6
- 238000006722 reduction reaction Methods 0.000 description 6
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- 239000000872 buffer Substances 0.000 description 5
- 238000003776 cleavage reaction Methods 0.000 description 5
- 229940079593 drug Drugs 0.000 description 5
- 238000004128 high performance liquid chromatography Methods 0.000 description 5
- 229960003752 oseltamivir Drugs 0.000 description 5
- NENPYTRHICXVCS-YNEHKIRRSA-N oseltamivir acid Chemical compound CCC(CC)O[C@@H]1C=C(C(O)=O)C[C@H](N)[C@H]1NC(C)=O NENPYTRHICXVCS-YNEHKIRRSA-N 0.000 description 5
- 230000008569 process Effects 0.000 description 5
- 230000007017 scission Effects 0.000 description 5
- NMEZJSDUZQOPFE-UHFFFAOYSA-N Cyclohex-1-enecarboxylic acid Chemical class OC(=O)C1=CCCCC1 NMEZJSDUZQOPFE-UHFFFAOYSA-N 0.000 description 4
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 4
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 4
- 241001465754 Metazoa Species 0.000 description 4
- UIIMBOGNXHQVGW-UHFFFAOYSA-M Sodium bicarbonate Chemical compound [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 description 4
- 239000011521 glass Substances 0.000 description 4
- 150000002466 imines Chemical class 0.000 description 4
- 238000011534 incubation Methods 0.000 description 4
- 150000002500 ions Chemical class 0.000 description 4
- 239000003446 ligand Substances 0.000 description 4
- 229910052943 magnesium sulfate Inorganic materials 0.000 description 4
- BDAGIHXWWSANSR-UHFFFAOYSA-N methanoic acid Natural products OC=O BDAGIHXWWSANSR-UHFFFAOYSA-N 0.000 description 4
- 239000002904 solvent Substances 0.000 description 4
- 125000006850 spacer group Chemical group 0.000 description 4
- 239000011550 stock solution Substances 0.000 description 4
- ZRALSGWEFCBTJO-UHFFFAOYSA-N Guanidine Chemical group NC(N)=N ZRALSGWEFCBTJO-UHFFFAOYSA-N 0.000 description 3
- 238000005481 NMR spectroscopy Methods 0.000 description 3
- 241000845082 Panama Species 0.000 description 3
- 108010059712 Pronase Proteins 0.000 description 3
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 3
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 3
- 230000009471 action Effects 0.000 description 3
- 150000001412 amines Chemical class 0.000 description 3
- 239000012267 brine Substances 0.000 description 3
- 239000003054 catalyst Substances 0.000 description 3
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- 208000037797 influenza A Diseases 0.000 description 3
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- 229910002027 silica gel Inorganic materials 0.000 description 3
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical compound O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 3
- 238000012360 testing method Methods 0.000 description 3
- WSLDOOZREJYCGB-UHFFFAOYSA-N 1,2-Dichloroethane Chemical compound ClCCCl WSLDOOZREJYCGB-UHFFFAOYSA-N 0.000 description 2
- OSWFIVFLDKOXQC-UHFFFAOYSA-N 4-(3-methoxyphenyl)aniline Chemical compound COC1=CC=CC(C=2C=CC(N)=CC=2)=C1 OSWFIVFLDKOXQC-UHFFFAOYSA-N 0.000 description 2
- 102000003846 Carbonic anhydrases Human genes 0.000 description 2
- 108090000209 Carbonic anhydrases Proteins 0.000 description 2
- DHMQDGOQFOQNFH-UHFFFAOYSA-N Glycine Chemical compound NCC(O)=O DHMQDGOQFOQNFH-UHFFFAOYSA-N 0.000 description 2
- 229930186217 Glycolipid Natural products 0.000 description 2
- 102000003886 Glycoproteins Human genes 0.000 description 2
- 108090000288 Glycoproteins Proteins 0.000 description 2
- 101900156543 Influenza A virus Neuraminidase Proteins 0.000 description 2
- VMHLLURERBWHNL-UHFFFAOYSA-M Sodium acetate Chemical compound [Na+].CC([O-])=O VMHLLURERBWHNL-UHFFFAOYSA-M 0.000 description 2
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 2
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- 125000003172 aldehyde group Chemical group 0.000 description 2
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- 238000010168 coupling process Methods 0.000 description 2
- 238000005859 coupling reaction Methods 0.000 description 2
- 239000012043 crude product Substances 0.000 description 2
- 238000000132 electrospray ionisation Methods 0.000 description 2
- 239000003480 eluent Substances 0.000 description 2
- 235000019439 ethyl acetate Nutrition 0.000 description 2
- 235000019253 formic acid Nutrition 0.000 description 2
- 238000000338 in vitro Methods 0.000 description 2
- 238000001727 in vivo Methods 0.000 description 2
- 230000003993 interaction Effects 0.000 description 2
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- 102000004196 processed proteins & peptides Human genes 0.000 description 2
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- 238000004007 reversed phase HPLC Methods 0.000 description 2
- 238000012216 screening Methods 0.000 description 2
- 238000001338 self-assembly Methods 0.000 description 2
- 125000005629 sialic acid group Chemical group 0.000 description 2
- 239000001632 sodium acetate Substances 0.000 description 2
- 235000017281 sodium acetate Nutrition 0.000 description 2
- 229910000030 sodium bicarbonate Inorganic materials 0.000 description 2
- 238000003756 stirring Methods 0.000 description 2
- 230000004083 survival effect Effects 0.000 description 2
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- 230000003612 virological effect Effects 0.000 description 2
- 125000003837 (C1-C20) alkyl group Chemical group 0.000 description 1
- ULPMRIXXHGUZFA-UHFFFAOYSA-N (R)-4-Methyl-3-hexanone Natural products CCC(C)C(=O)CC ULPMRIXXHGUZFA-UHFFFAOYSA-N 0.000 description 1
- 238000001644 13C nuclear magnetic resonance spectroscopy Methods 0.000 description 1
- PFCHFHIRKBAQGU-UHFFFAOYSA-N 3-hexanone Chemical compound CCCC(=O)CC PFCHFHIRKBAQGU-UHFFFAOYSA-N 0.000 description 1
- HSHNITRMYYLLCV-UHFFFAOYSA-N 4-methylumbelliferone Chemical compound C1=C(O)C=CC2=C1OC(=O)C=C2C HSHNITRMYYLLCV-UHFFFAOYSA-N 0.000 description 1
- UXVMQQNJUSDDNG-UHFFFAOYSA-L Calcium chloride Chemical compound [Cl-].[Cl-].[Ca+2] UXVMQQNJUSDDNG-UHFFFAOYSA-L 0.000 description 1
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 1
- 239000004471 Glycine Substances 0.000 description 1
- 241000238631 Hexapoda Species 0.000 description 1
- 241000282412 Homo Species 0.000 description 1
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 1
- 208000002979 Influenza in Birds Diseases 0.000 description 1
- 229940123424 Neuraminidase inhibitor Drugs 0.000 description 1
- 241000256251 Spodoptera frugiperda Species 0.000 description 1
- HEDRZPFGACZZDS-MICDWDOJSA-N Trichloro(2H)methane Chemical compound [2H]C(Cl)(Cl)Cl HEDRZPFGACZZDS-MICDWDOJSA-N 0.000 description 1
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- 125000004122 cyclic group Chemical group 0.000 description 1
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- 125000004185 ester group Chemical group 0.000 description 1
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- 239000000284 extract Substances 0.000 description 1
- 238000004401 flow injection analysis Methods 0.000 description 1
- 239000012634 fragment Substances 0.000 description 1
- ZZUFCTLCJUWOSV-UHFFFAOYSA-N furosemide Chemical compound C1=C(Cl)C(S(=O)(=O)N)=CC(C(O)=O)=C1NCC1=CC=CO1 ZZUFCTLCJUWOSV-UHFFFAOYSA-N 0.000 description 1
- 239000007903 gelatin capsule Substances 0.000 description 1
- 239000008187 granular material Substances 0.000 description 1
- 150000002374 hemiaminals Chemical class 0.000 description 1
- 235000014304 histidine Nutrition 0.000 description 1
- 150000002411 histidines Chemical class 0.000 description 1
- 230000003301 hydrolyzing effect Effects 0.000 description 1
- 239000007943 implant Substances 0.000 description 1
- 230000002779 inactivation Effects 0.000 description 1
- 208000037798 influenza B Diseases 0.000 description 1
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- 239000002184 metal Substances 0.000 description 1
- QYCVPHNBLQJLOO-ZXJUBJKJSA-N methyl (3R,4R,5S)-4-acetamido-3-(cyclohex-3-en-1-ylmethylamino)-5-[(2-methylpropan-2-yl)oxycarbonyl-[N-[(2-methylpropan-2-yl)oxycarbonyl]carbamimidoyl]amino]cyclohexene-1-carboxylate Chemical compound C(C)(=O)N[C@@H]1[C@@H](C=C(C[C@@H]1N(C(=NC(=O)OC(C)(C)C)N)C(=O)OC(C)(C)C)C(=O)OC)NCC1CC=CCC1 QYCVPHNBLQJLOO-ZXJUBJKJSA-N 0.000 description 1
- 239000003094 microcapsule Substances 0.000 description 1
- 239000002808 molecular sieve Substances 0.000 description 1
- 238000012544 monitoring process Methods 0.000 description 1
- 102000039446 nucleic acids Human genes 0.000 description 1
- 108020004707 nucleic acids Proteins 0.000 description 1
- 150000007523 nucleic acids Chemical class 0.000 description 1
- 239000002674 ointment Substances 0.000 description 1
- 239000008194 pharmaceutical composition Substances 0.000 description 1
- 239000006187 pill Substances 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 125000006239 protecting group Chemical group 0.000 description 1
- 235000018102 proteins Nutrition 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 210000002345 respiratory system Anatomy 0.000 description 1
- 238000000926 separation method Methods 0.000 description 1
- 239000012679 serum free medium Substances 0.000 description 1
- URGAHOPLAPQHLN-UHFFFAOYSA-N sodium aluminosilicate Chemical compound [Na+].[Al+3].[O-][Si]([O-])=O.[O-][Si]([O-])=O URGAHOPLAPQHLN-UHFFFAOYSA-N 0.000 description 1
- 239000011780 sodium chloride Substances 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B30/00—Methods of screening libraries
- C40B30/04—Methods of screening libraries by measuring the ability to specifically bind a target molecule, e.g. antibody-antigen binding, receptor-ligand binding
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07C—ACYCLIC OR CARBOCYCLIC COMPOUNDS
- C07C233/00—Carboxylic acid amides
- C07C233/01—Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms
- C07C233/45—Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by carboxyl groups
- C07C233/52—Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by carboxyl groups with the substituted hydrocarbon radical bound to the nitrogen atom of the carboxamide group by a carbon atom of a ring other than a six-membered aromatic ring
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07C—ACYCLIC OR CARBOCYCLIC COMPOUNDS
- C07C279/00—Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups
- C07C279/16—Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups having nitrogen atoms of guanidine groups bound to carbon atoms of rings other than six-membered aromatic rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/04—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length on carriers
- C07K1/047—Simultaneous synthesis of different peptide species; Peptide libraries
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/64—Cyclic peptides containing only normal peptide links
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/34—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6845—Methods of identifying protein-protein interactions in protein mixtures
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07C—ACYCLIC OR CARBOCYCLIC COMPOUNDS
- C07C2601/00—Systems containing only non-condensed rings
- C07C2601/12—Systems containing only non-condensed rings with a six-membered ring
- C07C2601/16—Systems containing only non-condensed rings with a six-membered ring the ring being unsaturated
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/90—Enzymes; Proenzymes
- G01N2333/914—Hydrolases (3)
- G01N2333/924—Hydrolases (3) acting on glycosyl compounds (3.2)
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2500/00—Screening for compounds of potential therapeutic value
- G01N2500/20—Screening for compounds of potential therapeutic value cell-free systems
Definitions
- the present invention relates to dynamic combinatorial chemistry (DCC), more particularly to the use of DCC to identify compounds which are active as neuraminidase inhibitors.
- DCC dynamic combinatorial chemistry
- New chemical or biological entities with useful properties are classically generated by identifying a chemical or biological compound (a so-called lead compound) with some desirable properties or activities, creating varieties of said compound to form a library, and evaluating the properties and activities of those variant compounds.
- the conventional approach is limited by the relatively small pool of previously identified compounds which may be screened to identify new compounds with the desirable property or activity.
- Combinatorial chemistry has experienced an explosive growth in recent years. It provides a powerful methology for exploring the molecular geometrical and interactional spaces through molecular diversity generation. This is in particular the case for the discovery of new biologically active substances and medical drugs. It resides on the constitution of vast combinatorial libraries (CLs), extensive collections of molecules derived from a set of units connected by successive and repetetive application of specific chemical reactions. It is thus based on a large population of different molecules that are present as discrete entities.
- CLs combinatorial libraries
- the constitution of a CL of components amounts to the fabrication of a large collection of components.
- the CL is then screened against a target, with the goal that one of its constituents will fit the target lock/receptor, i.e. show an activity, and be retrievable from the mixture.
- the present invention makes use of the so-called dynamic combinatorial chemistry which is a conceptionally different approach. It relies on a reversible connection process for the spontaneous and continuous generation of all possible combinations of a set of basic constituents, thus making virtually available all structural and interactional features that these combinations may present.
- Such multicomponent self-assembly amounts to the presentation of a dynamic combinatorial library (DCL) which is a potential library made up of all possible combinations in number and nature of the available components.
- DCL dynamic combinatorial library
- the composition of the set of components/subunits depends on the extent to which the possible combinations cover the geometrical and interactional spaces of the targets.
- Self-assembly in a multi-component system is a combinatorial process with a search procedure directed by the kinetic and thermodynamic parameters imposed by the nature of constituents and their interactions.
- a substance library which library consists of molecular species which are bonded to a molecular pairing system.
- the pairing system is composed of molecules, in the preferred embodiment, which are selected amongst specially designed nucleic acids which can bind to each other in a certain manner which results in a particular geometric form.
- the molecular species are selected, in a preferred embodiment, from the group consisting of peptides, and these peptides are designed according to the particular requirements of a given component which is brought into contact with the library component.
- the complex which forms upon contact with the component is identified, in order to evaluate the interaction between a component and complex.
- Ivan Hue and Jean-Marie Lehn disclose a method for the generation of a dynamic combinatorial library of imines from structural fragments bearing aldehyde and amino groups.
- the method is directed toward the synthesis of inhibitors of the enzyme carbonic anhydrase by recognition-involved assembly, and the synthesis of the above-mentioned imines is carried out in the presence of the said enzyme carbonic anhydrase. It was found that reversible combination of the used amines and aldehydes leads to the shift of the equilibrium population towards the imine product that was closest in structure to a known highly efficient inhibitor of the enzyme.
- the application WO 01/64605 discloses a process for establishing a dynamic combinatorial library for a target which binds at least two functionalities.
- the method comprises selecting a plurality of molecules carrying functionalities which, by combination with each other, are capable of forming an entity which may bind to the functionalities in the target.
- the molecules carrying the functionalities are linked by a spacer group which allows a reversible formation and cleavage of bonds. The cleavage and formation of the bonds can occur in the spacer group, or at the terminus of it.
- the spacer group will be selected such as to potentially fit into the binding site(s) of the target.
- the spacer groups disclosed in the application are all linear entities like for example alkane derivatives, and contain a maximum of two linking groups allowing the formation and cleavage reversible bonds.
- influenza A virus neuraminidase is appropiate, a viral surface enzyme that catalyzes the cleavage of sialic acid residues terminally linked to glycoproteins and glycolipids and plays an important role in the propagation of the virus.
- a class of compounds being neuraminidase inhibitors and active against the propagation of the virus is composed of cyclohexene carboxylic acid derivatives. This class of compounds is the object of several patent applications.
- the application WO 99/31047 discloses cyclohexene carboxylate derivatives which are active as neuraminidase inhibitors.
- the compounds carry two amino substituents in 3- and 5- position and a -NHCOO " substituent in 4-position.
- neuraminidase inhibitors which are based on cyclohexene carboxylic acid derivatives carrying amino groups in 3- and 5-position.
- the carbon atom in 3- or 5-position however carries, besides the amino substituent, a further substitutent which is not a hydrogen atom.
- neuraminidase inhibitors which are based on cyclohexene carboxylic acid derivatives are disclosed in WO 98/07685, US 6,057,459, US 6,204,398 and US 5,859,284.
- the molecules disclosed in these documents all carry an alkoxy substituent.
- the object underlying the present invention is to provide further neuraminidase inhibitors.
- R is hydrogen or a C ⁇ -C 4 alkyl group
- R 1 to R 4 are independently of each other selected from the group consisting of: hydrogen, C 1 -C 20 alkyl groups, C 2 -C 2 o-alkenyl groups, C 4 -C 2 o aryl groups, C 5 -C 20 -aralkyl groups and C 5 -C 2 o- lkaryl groups, all of which groups can contain one or more hetero atoms from the group consisting of N, O, and S, and which groups can carry one or more substituents from the group consisting of hydroxyl groups and C ⁇ -C 4 -alkyl ester groups; or one of the substituents NR ! R 2 and NR 3 R 4 is a guanidino group of the formula
- R 9 is a C ⁇ -C 4 -alkyl group, or a physiologically acceptable salt or solvate thereof in any stereoisomeric form or mixtures thereof in any ratio, with the proviso that the compounds in which
- R 1 is H
- R 2 is CH(CH 2 CH 3 ) 2
- R 3 , R 4 are H and R is ethyl
- R 1 is H
- R 2 is -CH 2 CH 2 CH 3
- R 3 , R 4 are H and R is ethyl are excluded.
- the compounds of formula I are novel compounds and are an object of the present invention.
- the compounds according to formula I are used as a scaffold for the finding of neuraminidase inhibitors by a DCC-process.
- the library of potential inhibitors can be designed in such a way that the components will be formed from a scaffold according to formula I having a basic affinity for the target active site.
- the scaffold can, for example, react with molecules carrying an aldehyde linking group or molecules carrying a keto group. In case ketones are used, higher concentrations of the compounds are required, in general.
- each of the amino groups in the scaffold is in principle capable of reacting with any of the aldehyde groups to form a set of transient species A to D existing in a rapid dynamic equilibrium with each other and with the building blocks. Subsequent chemical reduction of the transient compounds with an externally added reagent irreversibly converts them a the set of amines E to H giving rise to a large array of stable library components, each containing up to four substituents attached to the scaffold
- the compounds 1 to 13 showing a neuraminidase inhibiting activity could be identified (see below).
- Particularly preferred compounds are those according to the formulae 9 to 13 in which Ac is -C(O)CH 3 .
- the most preferred compound is 7, which inhibits neuraminidase with an efficiency similar to or even better than the known influenza drug oseltamivir.
- the compound is synthesized according to the above scheme.
- Another preferred compound is 8 (see Fig 5) which is synthesized in a way analogous to the above scheme.
- Still a further object of the present invention are compounds according to formula I in which in which one of the groups -NR'R 2 and -NR 3 R 4 is a guanidinium group and the other group is an amino group which is not substituted by hydrogen.
- the compounds 14 and 15 which can be synthesized as depicted in the following scheme are preferred.
- a further object of the present invention are medicaments which contain an effective amount of a compound according to the formula I as defined above. This preferrably applies to the molecules which have above been denoted as being preferred compound classes, in particular to the compounds 7 to 15.
- the compounds according to formula I are hence appropriate for the use as a medicament, preferably for inhibiting the activity of neuraminidase, in particular for inhibiting the activity of influenza neuraminidase.
- Still a further object is the treatment of a mammal, in particular a human, with a compound according to formula I, preferrably against the action of neuraminidase.
- the compounds can be used in any appropriate form, e.g. as such, in form of a physiologically acceptable salt or a physiologically active solvate.
- compositions which comprise an effective dose of a compound of the formula I and a pharmaceutically acceptable carrier, i.e. one or more pharmaceutically acceptable carrier substances and or additives.
- the compounds according to the formula I can also be used in combination with other pharmaceutically active compounds, preferably compounds which are able to enhance the effect of the compounds according to the formula I.
- the compounds I can be administered to animals, preferably to mammals, and in particular to humans, as pharmaceutical by itself, or in the form of pharmaceutical preparations.
- the pharmaceutical according to the invention can be administered orally, for example in the form of pills, tablets, lacquered tablets, sugar-coated tablets, granules, hard and soft gelatin capsules, aqueous, alcoholic or oily solutions, syrups, emulsions or suspensions, or rectally, for example in the form of suppositories. Administration can also be carried out parenterally, for example subcutaneously, intramuscularly or intravenously in the form of solutions for injection or infusion.
- Suitable administration forms are, for example, percutaneous or topical administration, for example in the form of ointments, tinctures, sprays or transdermal therapeutic systems, or the inhalative administration in the form of nasal sprays or aerosol mixtures, or, for example, microcapsules, implants or rods.
- the preferred administration form depends, for example, on the disease to be treated and on its severity.
- Neuraminidase is a major target for drug action on influenza.
- the enzyme structure is well characterized and multiple SAR data on the active site ligands are available in the literature. It has been shown that the presence and particular spatial arrangement of a number of linking groups in the neuraminidase ligands are crucial and conserved in a majority of known inhibitors.
- influenza A virus neuraminidase was used, a viral surface enzyme that catalyzes the cleavage of sialic acid residues terminally linked to glycoproteins and glycolipids and plays an important role in the propagation of the virus. For solubility reasons, neuraminidase was expressed and the extra-cellular domain containing the active site was purified, see below.
- each of the amino groups in the scaffold is in principle capable of reacting with any of the aldehyde groups to form a set of transient species A to D existing in a rapid dynamic equilibrium with each other and with the building blocks.
- the addition of the target enzyme to the dynamic library shifts the equilibrium between the transient species toward the components with the highest affinity for the target. Chemical reduction of the library, after re-equilibriation in the presence of the target, should result in the distribution of stable components reflecting the enrichment in the transient best binders.
- the substituents were initially grouped in two sets.
- the first set contained 10 aldehydes, some of which showed statistically significant inhibition of neuraminidase activity in the mixture with the scaffold in a preliminary screening.
- the second set included the aldehydes A4, Al l, A14, A 17, A18 that did not show inhibitory activity in the preliminary screen.
- the aldehydes employed are depicted in Fig. 1.
- the potential diversity of the virtual libraries is very high, for example the set of 20 aldehydes potentially yields over 40.000 stable components.
- the library is biased toward formation of the monosubstituted components.
- Esquire 3000 ion trap mass spectrometer connected to an Agilent 1100 HPLC.
- MS data were acquired in the full scan mode and scanned for protonated molecular ions [M + H] + of potential products in extracted ion chromatograms.
- Corresponding peak areas plotted in Figures 1 -5 are proportional to the concentration of each component, but generally cannot be used to compare concentrations of two or more different components.
- the neuraminidase activity was determined using the synthetic substrate 2'-(4- methylumbelliferyl)-a-D-N-acetylneuraminic acid (MU-NANA).
- the enzyme was incubated for 30 min at 37°C with 50 ⁇ M MU-NANA in 100 mM sodium acetate pH 5.5, 2 mM CaC12 and subsequently the reaction was stopped with 200mM glycine pH10.5, 120mM NaCl for measuring the fluorescence of released 4-methylumbelliferone (4-MU) at an excitation wavelength of 355nm and an emission of 460nm.
- neuraminidase activity testing we either used purified tNA-His protein originating of the avian influenza A/FPV/Rostock/34 (H7N1) strain (see above) or virus preparations of different human Influenza A [A/Panama /2007/99 (H3N2); A/Johannesburg/33/94 (H3N2)] and Influenza B (B/Harbin 7/94; B/Victoria/504/2000) strains.
- the neuraminidase cDNA of the Influenza A/FPV/Rostock/34 was amplified and modified by PCR (forward primer: GGGGACAAGTTTGTACAAAAAAGCAGGCTGCCACCATGAA TCCAAATCAGAAAATAATAACC; reverse primer: GGGGACCACTTTGTACAAGAAAGCTGGGTTT
- pDEST8-tNA-His which encodes for a neuraminidase with six histidines fused to the C-terminus (tNA-His).
- Spodoptera frugiperda Sf-9 insect cells were cultivated at 27°C in the serum-free medium ExCell400 (JRH Bioscience). Exponentially growing cells (2 x 106 cells/ml) were infected with baculovirus at a multiplicity of infection (MOI) of 10. After 72h of expression the cells were harvested and the extra-cellular domain of the neuraminidase (sol-tNA-His) was released by treatment with pronase (Ref. ).
- MOI multiplicity of infection
- sol- tNA-His was purified by metal chelate affinity chromatography using Ni-NTA superflow beads (Qiagen). The purification yielded an average of 3mg of sol-tNA-His out of 11 of culture, with a purity of >80% and a specific activity of -4000 U/mg.
- the structure of the scaffold was modified by replacing the amino group which in the active components had not been substituted with a guanidinium group, see compound 2.
- Such a replacement yields better binding of the known inhibitors, as can be seen from the Kj value of 5 (Fig. 5).
- the experiments with the virtual libraries were performed similarly to those described in Example 2, and the subset of substitutes selected with the scaffold 2 was identical to that with 1.
- the preferred components, 7 and 8 were also synthesized individually and showed Kj values of 16 and 52 nM, respectively.
- the identity of the individually synthesized stable components with the ones formed in the presence of the enzyme was confirmed by the HPLC -MS analysis.
- Ketone stock solutions were prepared by dissolving in DMSO in 1M or 5M concentration.
- a 43 ⁇ M solution of Neuraminidase (50 ⁇ l) in imidazole buffer (pH 7.8) was added the scaffold 1 or 2 (5 ⁇ l of a 1 mM solution in the imidazol buffer pH 7.8) and premixed stock solutions of ketones (0.25 ⁇ l of 5M solution in DMSO each).
- the reaction mixture was incubated for 10 min. and then tetrabutylammonium cyano borhydride (TBC) (4 ⁇ l of 0.1 mM solution in acetonitril) was added. After incubation at 25°C the reaction mixture was analyzed by HPLC/MS.
- TBC tetrabutylammonium cyano borhydride
- HPLC -MS analyses were performed with electrospray ionization (positive mode) on a Micromass Quattro Ultima quadrupole-hexapole-quadrupole mass spectrometer connected to a Waters allianceTM 2695 HPLC.
- Eluent composition was kept isocratic at 0 % B for 3 min.
- Re- equilibration time was 3 min.
- MS data were acquired in the selective reaction monitoring (SRM) mode and scanned for specific ion transitions of potential products. Suitable ion transitions for SRM measurements were determined by flow injection and MS/MS analysis (recording of product ion spectra) of standard compounds.
- SRM selective reaction monitoring
- Ki (nM) of selected inhibitors determined for neuraminidases from different virus subtypes
- mice were infected with different Influenza strains in the presence or absence of the inhibitors to be tested or the inhibitors were added only after the infection.
- mice C57BI/6 were either infected intranasal with 200 TCID50 (2.5 LD50) of Influenza A/PR/8/34 (H1N1) or intraperitoneal with 100 TCID50 of A/FPV/ Bratislava (H7N7).
- the inhibitor HK103 42nMol was added at time 0 and again after 24h intranasal or intraperitoneal, respectively.
- the efficacy of the inhibitor was measured by the survival of animals within a time period of 12 days.
- mice C57BI/6 were infected intranasal with 200 TCID50 (2.5 LD50) of Influenza A/PR/8/34 (H1N1) either in the presence of the inhibitors (0,lmg/kg body weight) at time point 0 or the inhibitors were applied after infection at 5 consecutive days (day 1 to 5).
- the efficacy of the inhibitors were measured by the survival of animals within a time period of 21 days. In the complete absence of inhibitor (PBS) or if treated with inhibitor from day 1-5 (HK103 and Oseltamivir) the mice started to die after 7 days.
- mice Only 1 (in case of PBS or oseltamivir) or 2 (in case of HK103) mice survived the Influenza infection. In case of infection and direct treatment with the inhibitors (HK103 or oseltamivir) at day 0 all mice survived.
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Cited By (7)
Publication number | Priority date | Publication date | Assignee | Title |
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WO2004092727A2 (fr) * | 2003-04-11 | 2004-10-28 | Structural Genomix, Inc. | Bibliotheques de composes et procedes de decouverte de medicaments |
EP1496038A1 (fr) * | 2003-07-11 | 2005-01-12 | Therascope AG | Méthode de synthèse d'une chimiothèque combinatoire dynamique faisant intervenir des nitrones |
EP1496039A1 (fr) * | 2003-07-11 | 2005-01-12 | Therascope AG | Méthode de création d'une chimiothèque combinatoire dynamique |
US7149280B2 (en) | 2002-12-23 | 2006-12-12 | Astex Therapeutics Limited | Synthesis and screening of ligands using X-ray crystallography |
WO2009068321A1 (fr) * | 2007-11-26 | 2009-06-04 | Forschungsverbund Berlin E.V. | Criblage haut débit dirigé |
JP2014532633A (ja) * | 2011-10-28 | 2014-12-08 | クリスチャン−アルブレヒト大学キールChristian−Albrechts−Universitat zu Kiel | インフルエンザを処置するための化合物 |
WO2017186138A1 (fr) * | 2016-04-28 | 2017-11-02 | 广州市恒诺康医药科技有限公司 | Dérivé du cyclohexène ou son sel pharmaceutiquement acceptable et leur application |
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JP6754997B2 (ja) * | 2013-08-26 | 2020-09-16 | 国立大学法人 東京大学 | 大環状ペプチド、その製造方法、及び大環状ペプチドライブラリを用いるスクリーニング方法 |
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WO1999031047A1 (fr) * | 1997-12-12 | 1999-06-24 | Gilead Sciences, Inc. | Carboxylates de cyclohexene utilises comme inhibiteurs de neuraminidase |
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US6008058A (en) * | 1993-06-18 | 1999-12-28 | University Of Louisville | Cyclic peptide mixtures via side chain or backbone attachment and solid phase synthesis |
JPH10501818A (ja) * | 1994-06-16 | 1998-02-17 | スミスクライン・ビーチャム・コーポレイション | 鋳型指向性環化 |
US5958702A (en) * | 1995-02-06 | 1999-09-28 | Benner; Steven Albert | Receptor-assisted combinatorial chemistry |
DE19619373A1 (de) * | 1996-05-14 | 1997-11-20 | Hoechst Ag | Neue Substanzbibliothek und damit hergestellte supramolekulare Komplexe |
US20020068301A1 (en) * | 1997-05-28 | 2002-06-06 | Hung-Sen Lai | Cyclic peptide libraries and methods of use thereof to identify binding motifs |
CA2284459C (fr) * | 1999-10-04 | 2012-12-11 | Neokimia Inc. | Synthese combinatoire de bibliotheques de composes macrocycliques utiles pour la decouverte de medicaments |
EP1130009A1 (fr) * | 2000-03-01 | 2001-09-05 | Therascope AG | Préparation et screening d'une bibliothèque de chimie combinatoire dynamique |
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2002
- 2002-10-15 WO PCT/EP2002/011526 patent/WO2003033437A2/fr not_active Application Discontinuation
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WO1999031047A1 (fr) * | 1997-12-12 | 1999-06-24 | Gilead Sciences, Inc. | Carboxylates de cyclohexene utilises comme inhibiteurs de neuraminidase |
Non-Patent Citations (1)
Title |
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LEW W ET AL: "A new series of C3-aza carbocyclic influenza neuraminidase inhibitors: synthesis and inhibitory activity" BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, OXFORD, GB, vol. 8, no. 23, 1 December 1998 (1998-12-01), pages 3321-3324, XP004143751 ISSN: 0960-894X * |
Cited By (10)
Publication number | Priority date | Publication date | Assignee | Title |
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US7149280B2 (en) | 2002-12-23 | 2006-12-12 | Astex Therapeutics Limited | Synthesis and screening of ligands using X-ray crystallography |
WO2004092727A2 (fr) * | 2003-04-11 | 2004-10-28 | Structural Genomix, Inc. | Bibliotheques de composes et procedes de decouverte de medicaments |
WO2004092727A3 (fr) * | 2003-04-11 | 2005-12-01 | Structural Genomix Inc | Bibliotheques de composes et procedes de decouverte de medicaments |
EP1496038A1 (fr) * | 2003-07-11 | 2005-01-12 | Therascope AG | Méthode de synthèse d'une chimiothèque combinatoire dynamique faisant intervenir des nitrones |
EP1496039A1 (fr) * | 2003-07-11 | 2005-01-12 | Therascope AG | Méthode de création d'une chimiothèque combinatoire dynamique |
WO2009068321A1 (fr) * | 2007-11-26 | 2009-06-04 | Forschungsverbund Berlin E.V. | Criblage haut débit dirigé |
JP2014532633A (ja) * | 2011-10-28 | 2014-12-08 | クリスチャン−アルブレヒト大学キールChristian−Albrechts−Universitat zu Kiel | インフルエンザを処置するための化合物 |
WO2017186138A1 (fr) * | 2016-04-28 | 2017-11-02 | 广州市恒诺康医药科技有限公司 | Dérivé du cyclohexène ou son sel pharmaceutiquement acceptable et leur application |
CN107325040A (zh) * | 2016-04-28 | 2017-11-07 | 广州市恒诺康医药科技有限公司 | 环己烯类衍生物或其药学上可接受的盐及其用途 |
EP3450427A4 (fr) * | 2016-04-28 | 2019-07-03 | Guangzhou Henovcom Bioscience Co. Ltd. | Dérivé du cyclohexène ou son sel pharmaceutiquement acceptable et leur application |
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WO2003034071A3 (fr) | 2004-03-11 |
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