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WO2001020535A3 - Graphical user interface for display and analysis of biological sequence data - Google Patents

Graphical user interface for display and analysis of biological sequence data Download PDF

Info

Publication number
WO2001020535A3
WO2001020535A3 PCT/US2000/025247 US0025247W WO0120535A3 WO 2001020535 A3 WO2001020535 A3 WO 2001020535A3 US 0025247 W US0025247 W US 0025247W WO 0120535 A3 WO0120535 A3 WO 0120535A3
Authority
WO
WIPO (PCT)
Prior art keywords
user interface
graphical user
analysis
display
sequence data
Prior art date
Application number
PCT/US2000/025247
Other languages
French (fr)
Other versions
WO2001020535A2 (en
WO2001020535A9 (en
Inventor
Stephen Chamberlin
Steven A Benner
Lukas Knecht
Original Assignee
Eragen Biosciences Inc
Stephen Chamberlin
Steven A Benner
Lukas Knecht
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US09/397,335 external-priority patent/US6941317B1/en
Application filed by Eragen Biosciences Inc, Stephen Chamberlin, Steven A Benner, Lukas Knecht filed Critical Eragen Biosciences Inc
Priority to AU74881/00A priority Critical patent/AU781841B2/en
Priority to JP2001524043A priority patent/JP2003509776A/en
Priority to CA002384883A priority patent/CA2384883A1/en
Priority to EP00963469A priority patent/EP1221126A2/en
Publication of WO2001020535A2 publication Critical patent/WO2001020535A2/en
Publication of WO2001020535A3 publication Critical patent/WO2001020535A3/en
Publication of WO2001020535A9 publication Critical patent/WO2001020535A9/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B10/00—ICT specially adapted for evolutionary bioinformatics, e.g. phylogenetic tree construction or analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Data Mining & Analysis (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring And Recording Apparatus For Diagnosis (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

A computer research tool is provided for searching and displaying biological data. Specifically, the invention provides a computer research tool for performing computerized research of biological data from various databases and for providing a novel graphical user interface that significantly enhances biological data representation, progressive querying and cross-navigation of windows and databases. The invention can be implemented in numerous ways, including as a system, a device, a method, or a computer readable medium.
PCT/US2000/025247 1999-09-14 2000-09-14 Graphical user interface for display and analysis of biological sequence data WO2001020535A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
AU74881/00A AU781841B2 (en) 1999-09-14 2000-09-14 Graphical user interface for display and analysis of biological sequence data
JP2001524043A JP2003509776A (en) 1999-09-14 2000-09-14 Graphical user interface for displaying and analyzing biological sequence data
CA002384883A CA2384883A1 (en) 1999-09-14 2000-09-14 Graphical user interface for display and analysis of biological sequence data
EP00963469A EP1221126A2 (en) 1999-09-14 2000-09-14 Graphical user interface for display and analysis of biological sequence data

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US15414999P 1999-09-14 1999-09-14
US09/397,335 1999-09-14
US60/154,149 1999-09-14
US09/397,335 US6941317B1 (en) 1999-09-14 1999-09-14 Graphical user interface for display and analysis of biological sequence data

Publications (3)

Publication Number Publication Date
WO2001020535A2 WO2001020535A2 (en) 2001-03-22
WO2001020535A3 true WO2001020535A3 (en) 2002-01-17
WO2001020535A9 WO2001020535A9 (en) 2002-09-26

Family

ID=26851192

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2000/025247 WO2001020535A2 (en) 1999-09-14 2000-09-14 Graphical user interface for display and analysis of biological sequence data

Country Status (6)

Country Link
EP (1) EP1221126A2 (en)
JP (1) JP2003509776A (en)
CN (1) CN1390332A (en)
AU (1) AU781841B2 (en)
CA (1) CA2384883A1 (en)
WO (1) WO2001020535A2 (en)

Families Citing this family (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1271343A1 (en) * 2001-06-22 2003-01-02 Kelman Gesellschaft für Geninformation mbH Method and device for automatically processing and outputting electronic data sets
EP1271344A1 (en) * 2001-06-22 2003-01-02 Kelman Gesellschaft für Geninformation mbH Method and device for automatically processing and outputting electronic data
EP1510938B1 (en) * 2003-08-29 2014-06-18 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
JP4638726B2 (en) * 2004-12-22 2011-02-23 株式会社アルファジェン Sample set manufacturing method, gene alignment program, and sample set
CN1932040B (en) * 2006-09-21 2010-06-09 武汉大学 Automated and rapid detection system for genome-wide target gene family members
DK2294407T3 (en) * 2008-06-06 2017-05-15 Dna Twopointo Inc SYSTEMS AND PROCEDURES FOR DETERMINING PROPERTIES THAT AFFECT THE EXPRESSION PROPERTY VALUE OF POLYNUCLEOTIDES IN AN EXPRESSION SYSTEM
US8832098B2 (en) 2008-07-29 2014-09-09 Yahoo! Inc. Research tool access based on research session detection
KR101165536B1 (en) * 2010-10-21 2012-07-16 삼성에스디에스 주식회사 Method for providing gene information and gene information server using the same, and computer readable recording medium containing gene information browser program
US20140089328A1 (en) * 2012-09-27 2014-03-27 International Business Machines Corporation Association of data to a biological sequence
US10296164B2 (en) * 2015-12-08 2019-05-21 Fisher-Rosemount Systems, Inc. Methods, apparatus and systems for multi-module process control management
CN113674798B (en) * 2020-05-15 2024-04-26 复旦大学 Proteomics data analysis system
EP4494033A1 (en) 2022-05-10 2025-01-22 Google LLC Summary generation for live summaries with user and device customization

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1998026407A2 (en) * 1996-12-12 1998-06-18 Incyte Pharmaceuticals, Inc. Database for comparing and displaying genomic information

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1998026407A2 (en) * 1996-12-12 1998-06-18 Incyte Pharmaceuticals, Inc. Database for comparing and displaying genomic information

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
EERNISSE D J: "A brief guide to phylogenetic software", TRENDS IN GENETICS,NL,ELSEVIER SCIENCE PUBLISHERS B.V. AMSTERDAM, vol. 14, no. 11, 1 November 1998 (1998-11-01), pages 473 - 475, XP004146861, ISSN: 0168-9525 *
PAGE RDM: "TreeView: An application to display phylogenetic trees on personal computers", COMPUTER APPLICATIONS IN THE BIOSCIENCES, 1996, pages 357 - 358, XP001010348 *
PERRIERE G ET AL: "WWW-QUERY: AN ON-LINE RETRIEVAL SYSTEM FOR BIOLOGICAL SEQUENCE BANKS", BIOCHIMIE,PARIS,FR, vol. 78, 1996, pages 364 - 369, XP001014183, ISSN: 0300-9084 *
YOSHIKAWA T ET AL: "ON THE IMPLEMENTATION OF A PHYLOGENETIC TREE DATABASE", VICTORIA, BC, AUG. 22 - 24, 1999,NEW YORK, NY, IEEE,US, vol. CONF. 7, 22 August 1999 (1999-08-22), pages 42 - 45, XP000898889, ISBN: 0-7803-5583-0 *

Also Published As

Publication number Publication date
CN1390332A (en) 2003-01-08
EP1221126A2 (en) 2002-07-10
AU781841B2 (en) 2005-06-16
AU7488100A (en) 2001-04-17
JP2003509776A (en) 2003-03-11
CA2384883A1 (en) 2001-03-22
WO2001020535A2 (en) 2001-03-22
WO2001020535A9 (en) 2002-09-26

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