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WO2001019974A2 - Recombinant microorganisms - Google Patents

Recombinant microorganisms Download PDF

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Publication number
WO2001019974A2
WO2001019974A2 PCT/GB2000/003402 GB0003402W WO0119974A2 WO 2001019974 A2 WO2001019974 A2 WO 2001019974A2 GB 0003402 W GB0003402 W GB 0003402W WO 0119974 A2 WO0119974 A2 WO 0119974A2
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Prior art keywords
promoter
gut
colonising
recombinant
antigen
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PCT/GB2000/003402
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French (fr)
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WO2001019974A3 (en
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Richard William Titball
Helen Lisa Bullifent
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The Secretary Of State For Defence
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Priority claimed from GBGB9921275.5A external-priority patent/GB9921275D0/en
Application filed by The Secretary Of State For Defence filed Critical The Secretary Of State For Defence
Priority to GB0203213A priority Critical patent/GB2369618B/en
Priority to JP2001523746A priority patent/JP2003509046A/en
Priority to CA002382067A priority patent/CA2382067A1/en
Priority to US10/070,882 priority patent/US7524507B1/en
Priority to AU70206/00A priority patent/AU777298B2/en
Priority to EP00958787A priority patent/EP1210445B1/en
Priority to DE60033823T priority patent/DE60033823T2/en
Publication of WO2001019974A2 publication Critical patent/WO2001019974A2/en
Publication of WO2001019974A3 publication Critical patent/WO2001019974A3/en

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    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/02—Bacterial antigens
    • A61K39/025—Enterobacteriales, e.g. Enterobacter
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04—Antibacterial agents
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/24—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/52—Bacterial cells; Fungal cells; Protozoal cells
    • A61K2039/523—Bacterial cells; Fungal cells; Protozoal cells expressing foreign proteins
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • the present invention relates to recombinant microorganisms, in particular gut-colonising organisms, which are useful for example in the delivery of antigenic material and thus form the basis of vaccines.
  • Vaccines comprising these organisms and promoter sequences for use in them form a further aspect of the invention.
  • Attenuated mutants of Salmonella typhi are currently being evaluated as live, oral vaccines against typhoid fever (Tac et CO, et al., Infect. Immun. 1997;65:452-6). These mutants have also attracted attention as carriers for guest (vaccine) antigens but suitable animal models for testing these vaccines are not available. In view of this, many workers have used Salmonella typhimurium aroA expressing guest antigens for investigating the immune responses induced after oral vaccination of mice.
  • Microbiol. 1990;141:797-805, Nakayama K, et al . , Bio/Technology 1988;6:693-97) relies on the complementation of a lethal mutation by a plasmid which also encodes the guest antigen. Whilst this ensures retention of the plasmid, the gene encoding the guest antigen itself may be deleted.
  • An alternative approach involves the use of promoters which are induced within host tissues to direct guest antigen expression at that site. Because the gene is only expressed after certain environmental cues have been recognised, this approach might reduce the selective pressure towards deleting the gene.
  • nirB promoter-driven genes were maintained more effectively in the Salmonella host strain. More recently, it has been shown that the htrA and osmC promoter can be used to direct expression of guest antigens in Salmonella (McSorley S J, et al., Infect. Immun. 1997;65:171-78, Roberts M, et al . , Infect. Immun. 1998;66:3080-87). However, it is likely that these promoters will not be suited to the expression of all guest antigens.
  • the OmpR/EnvZ two component regulatory system responds to changes in the osmotic strength and pH within S. typhimuri um
  • the PhoP/PhoQ two-component regulatory system controls virulence properties such as survival within macrophages, resistance to host defence antimicrobial peptides and acid pH, invasion of epithelial cells, the formation of spacious vacuoles and the processing and presentation of antigens by activated macrophages (Miller S I. et al., Proc. Natl. Acad, Sci USA 1989;86:5054-58, Fields P I, et al., Science 1989;243:1059-62, Pegues D A, et al., Mol. Microbiol. 1995;17:169-81, Wick M J, et al . , Mol. Microbiol.
  • the present invention provides a method of enhancing expression of a desired protein at mucosal effector sites, said method comprising placing the protein to be expressed under the control of a promoter having SEQ ID NO 2, SEQ ID NO 3 or SEQ ID NO 4 or a fragment or variant or any of these which has promoter activity, and causing expression in mucosal cells.
  • a construct comprising a promoter selected from the P QmpC , P p op and Pagc or fragments or variants thereof which can act as promoters, operatively interconnected with a nucleic acid which encodes a protein, able to induce a protective immune response against an organism, in a mammal to which it is administered, wherein said construct contains no further elements of the ompC, phoP or pagC gene .
  • the present invention further provides a recombinant gut- colonising microorganism which comprises a promoter selected from the P omp c, P h op and P pag c or fragments or variants thereof which can act as promoters, said promoter being operatively interconnected with a nucleic acid which encodes a heterologous protein, able to induce a protective immune response against a different organism, in a mammal to which it is administered.
  • a promoter selected from the P omp c, P h op and P pag c or fragments or variants thereof which can act as promoters, said promoter being operatively interconnected with a nucleic acid which encodes a heterologous protein, able to induce a protective immune response against a different organism, in a mammal to which it is administered.
  • microorganism has been transformed with the construct described above.
  • the term 'heterologous protein refers to proteins which are not native to the microorganism strain.
  • the three promoters (P pr ,op, Ppagc and P 0 m P c, ) which are included in the organisms of the invention are induced at different stages in the infection process, and hence at different sites in the body. This approach allows the induction of different immune responses which provide protection against pathogens which colonise different host cell compartments.
  • the sequence of these promoters has been elucidated previously, and these are given hereinafter in Figure 6 as SEQ ID NOS 2, 3 and 4 respectively.
  • the development of effective vaccines against pathogens is dependent not only on the identification of the appropriate protective antigens but also on the induction of an immune response at the site in the body which provides maximum protection against disease.
  • serum antibody provides protection against disease.
  • pathogens enter the body at a mucosal surface and protection against these diseases might therefore be dependent on the induction of mucosal immune responses .
  • Salmonella vaccine vector system is ideally suited to the delivery of many vaccine antigens since the vaccine delivery mechanism accurately mimics the natural disease, entering the body via the gut.
  • the recombinant gut-colonising microorganism comprises a Salmonella spp . such as Salmonella typhimurium or Salmonella typhi .
  • Recombinant gut-colonismg microorganisms of the invention are suitably attenuated so that the host does not experience significant harmful effects as a result of infection by the microorganism.
  • attenuated mutants include aro mutants such as aroA and aroC mutants, apartate ⁇ -semi-aldehyde dehydrogenase (ASD) mutants, pu ⁇ ne biosynthesis mutants, branched chain ammo acid biosynthesis mutants, galactose epimerase ( galE) mutants, regulatory mutants such as phoP and phoQ mutants, htrA se ⁇ ne protease mutants and adenyl cyclase mutants.
  • aro mutants such as aroA and aroC mutants, apartate ⁇ -semi-aldehyde dehydrogenase (ASD) mutants, pu ⁇ ne biosynthesis mutants, branched chain ammo acid biosynthesis mutants, galactose
  • Salmonella particularly attenuated strains of Salmonella , such as Salmonella typhi include aroA, aroC and htrA. mutants or triple mutants including all three mutations.
  • Recombinant gut-colonising microorganism as described above can be used to deliver a variety of antigenic agents which can be used to induce a protective immune response against a wide range of pathogens.
  • Pathogens which may be targeted in this way are those of humans or animals and include those listed in the Health and Safety Executive: 'Categorisation of Biological Agents according to Hazard and Category of Containment", HMSO, ISBN 0717610381.
  • antigenic agents which may be included in the recombinant organisms of the invention include those protective against tetanus such as tetanus toxin H c fragment, those protective against Botulinum such as botulinum toxin H c fragment, those protective against Bacillus anthracis such as Bacillus anthracis protective antigen (PA) , those protective against Bordetella pertussis such as Bordetella pertussis P69 antigen, those protective against Schistoma mansoni such as Schistoma mansoni glutathione-S-transferase, those protective against cholera such as Fibrio cholera ⁇ sub- unit, those protective against Herpes simplex virus (HSV) such as HSV glycoprotein D, those protective against HIV infection such as HIV envelope protein, and those protective against
  • HSV Herpes simplex virus
  • Escherischia coli such as E. coli LTB subunit or E. coli K88 antigen.
  • Other suitable antigenic agents as those protective against Mycrobacterium tuberculosis as well as agents which protects or enhances anti-tumour immunity.
  • antigens which can produce such as response include the Fl-antigen of Yersinia pestis or an antigenic fragment or variant thereof, or the V- antigen of Yersinia pestis or combinations thereof as described in WO 96/28551.
  • variant refers to sequences of amino acids which differ from the base sequence from which they are derived in that one or more amino acids within the sequence are substituted for other amino acids.
  • Amino acid substitutions may be regarded as "conservative” where an amino acid is replaced with a different amino acid with broadly similar properties.
  • Non-conservative substitutions are where amino acids are replaced with amino acids of a different type. Broadly speaking, fewer non-conservative substitutions will be possible without altering the biological activity of the polypeptide.
  • variants will be at least 60% homologous, preferably at least 75% homologous, and more preferably at least 90% homologous to the base sequence.
  • Homology in this instance can be determined using in particular the Needleman-Wunsch algorithm with gap penalty of 8 using a standard PAM scoring matrix (Needleman S.B. and Wunsch CD., J. Mol Biol. 1970, vol 48, 443- 453) .
  • the recombinant gut-colonising microorganisms described above are thus particularly suitable for use in the preparation of vaccines for therapeutic or prophylactic purposes, where they may be combined with a pharmaceutically acceptable carrier or diluent, as would be understood in the art.
  • the vaccines will be formulated so that they are adapted for oral administration and that the microorganism remains viable throughout any storage period .
  • they may preferably be in a form liquid form such as aqueous or oily suspensions, emulsions, syrups or elixirs.
  • Vaccine compositions may further comprise a buffer such as a bicarbonate buffer, in order to neutralise stomach acid.
  • the invention provides a method of inducing a protective immune response against a pathogen in a mammal, said method comprising administering to said mammal a recombinant gut-colonising microorganism which comprises a promoter selected from the Pomc r Pphop and P pag c or fragments or variants thereof which can act as promoters, said promoter being operatively interconnected with a nucleic acid which encodes an antigen protein, able to induce a protective immune response against said pathogen, in a mammal to which it is administered.
  • a recombinant gut-colonising microorganism which comprises a promoter selected from the Pomc r Pphop and P pag c or fragments or variants thereof which can act as promoters, said promoter being operatively interconnected with a nucleic acid which encodes an antigen protein, able to induce a protective immune response against said pathogen, in a mammal to which it is administered.
  • the invention provides the use of a promoter selected from P omp c, P op and P pag c in the production of a vaccine comprising a recombinant gut-colonising organism.
  • the promoters used in this study are induced at specific sites in the body. They are preferably cloned into the microorganism in a low copy number vector, because high copy number plasmids have been shown to be unstable in S typhimurium (Coulson N M, et al., Microb Pathog. 1994;16:305-11).
  • the PhoP gene would be expected to be expressed at a basal level from the PhoPp2 promoter and upregulated in the phagosome of host cells as a result of activation of the PhoPpl promoter
  • PhoP / PhoQ regulatory system has been shown to regulate the expression of a variety of genes including pagC, and to be important for survival in macrophages (Miller S I. et al . , Proc. Natl. Acad, Sci USA 1989;86:5054-58, Wick M J, et al . , Mol. Microbiol. 1995;16:465-76).
  • PhoP/PhoQ Genes regulated by the PhoP/PhoQ system are also important for the virulence of orally delivered bacteria (Galan J E, et al., Microb Pathog. 1989;6:433-43) .
  • Expression of the ompC is gene is upregulated under conditions of high osmotic strength (Foster J W, et al., Microbiology 1994;140:341-52, Nikaido H, et al., Cellular and Molecular Biology. American Society for Microbiology, Washington DC.
  • Figure 1 is a plasmid diagram illustrating plasmids used in the preparation of microorganisms in accordance with the invention
  • Figure 2 is a graph showing the levels of colonisation of spleen tissues of mice, 11 days after dosing with recombinant microorganisms of the invention
  • Figure 3 shows graphs illustrating IgG serum antibody levels in mice to the carrier bacterium, (Fig 3a) and to the FI antigen (Fig 3b), 21, 28 and 98 days after immunisation;
  • Figure 4 is a graph showing the isotype of the FI antibody found in mice serum on day 98, where the blank column represents the amount of the IgGl a ? and the shaded column represents the IgG2 a isotype in all groups of immunised animals:
  • Figure 5 is a graph showing the levels of circulating IgA antibody to Fl-antigen or the levels of IgA antibody to Fl- antigen in gut (blank column) or lung (shaded column) wash samples;
  • Figure 6 shows sequences of promoters used in the evaluation of the invention.
  • Figure 7 shows the results of elispot analysis of Peyer' s patch cells and in particular the IgA response against FI antigen (Figure 7a) and Salmonella ( Figure 7b) .
  • Example 1
  • Plasmids containing promoters for expression of Fl-antigen were then produced.
  • the promoters for the phoP, pagC and ompC genes have previously been mapped and upstream regulatory regions identified (Soncini F C, et al . , J. Bacteriol. 1995;177:4364-71, Pulkkinen W S, et al . , J. Bacteriol. 1991;173:86-9, Puente J L, et al., Gene. 1987;61:75-83, Puente J L, et al . , Gene.
  • phoP gene promoter a 139bp DNA fragment was identified which included the phoPpl and phoPp2 gene promoters and 80 bp upstream of the -35 site which has been predicted to form step loop structures (Soncini F C, et al., J. Bacteriol. 1995;177:4364-71).
  • pagC gene promote a 715 bp DNA fragment included 125 bp upstream of the -35 region (Pulkkinen W S, et al., J. Bacteriol. 1991;173:86-9).
  • a 371 bp DNA fragment included a 275 bp region upstream of the -35 region (Puente J L, et al., Gene. 1987;61:75-83, Puente J L, et al . , Gene. 1989;83:197-206).
  • DNA fragments were amplified from S. typhimurium strain SL1344 genomic DNA using the PCR. For comparison with a constitutive gene promoter, a 196 bp DNA fragment encoding the lacZ gene promoter and 140 bp upstream of the -35 region was identified. The 3' end of all of the DNA fragments terminated before the SD regions associated with the genes. These promoters were cloned upstream of the cafl open reading frame (encoding the Y " .
  • Oligonucleotide primers were designed to amplify promoter regions using the PCR (Table 1).
  • the primers included unique Notl , Xbal or Spel sites. Regions amplified included the -10 and -35 regions and upstream regulatory binding sites, but excluded the Shine-Dalgarno (SD) ribosome binding site.
  • SD Shine-Dalgarno
  • the DNA fragments were purified using Microcon 100 centrifugal concentrations (Millipore, Watford, UK) .
  • the purified DNA fragments were cloned into suitable digested plasmid pBluescript SK-, electroporated into E. coli JM101 and the cloned fragments were nucleotide sequenced to ensure their authenticity.
  • DNA fragments containing the promoter regions were purified using Qiaex (Qiagen Ltd, Crawley, UK) and blunt ended using Klenow fragment (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2 n ⁇ ed. Cold Spring Harbor Laboratory press, New York) .
  • the authentic promoter sequences were then cloned into plasmid pBR322 which had been digested with £coRl and Nrul and then blunt ended using Klenow fragment (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2 n ⁇ ed. Cold Spring Harbor Laboratory press, New York) .
  • the orientation of the cloned DNA fragment in the plasmid was determined by analysing, using agarose gel electrophoresis, the DNA fragments obtained after digestion with Xbal , Sspl or Styl .
  • a DNA fragment which encoded the Cafl open reading frame and the ribosome binding site was isolated after digestion of plasmid pORFl (Oyston P C F, et al . , Infect. Immun. 1995;63:563-68) with EcoRl followed by blunt ending of the DNA and further digestion with ifindlll .
  • the purified DNA fragment was ligated with promoter plasmids with which had been digested with Smal and Hindlll.
  • the final recombinant plasmids were transformed into E. coli strain M109.
  • Plasmids were isolated from E. coli (Sambrook J, Frston E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2 nd ed. Cold Spring Harbor Laboratory press, New York) and electroporated into S. typhimurium SL3281 (aroA) after passage through S. typhimurium LB5010 to ensure methylation of the DNA.
  • Example 2 The stability of the different plasmids encoding Fl-antigen driven from different promoters in 5.
  • typhimurium SL3261 was determined after culture of the bacteria in L-broth for 24hr ⁇ in vi tro stability) and enumeration of bacteria which grew on L- agar or L-agar containing amplicillin (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2 nd ed. Cold Spring Harbor Laboratory press, New York) .
  • the in vivo stability of plasmids was determined by inoculating groups of 10 female BALB/c mice orally with 10 9 cfu of bacteria in lOO ⁇ l of PBS, and enumerating bacteria isolated 11 days later from homogenised spleen tissue on L-agar or L-agar + ampicillin.
  • bacteria were also cultured from mesenteric lymph nodes (10/mouse) each homogenised in 2ml of PBS or from homogenised liver tissue which were removed on 11 days after dosing. Bacteria were enumerated bacteria as described above .
  • ampicillin-resistant bacteria could be recovered from all of the spleens isolated from orally dosed mice.
  • the in vivo stability of all of the plasmids within Salmonella was lower than the stability of the plasmids within Salmonella cultured in vitro.
  • mice were dosed orally with similar numbers of bacteria there were marked differences in the level of colonisation of spleen tissues at day 11 (Fig 2) .
  • the highest levels of colonisation were found with bacteria containing pP D j, D p-Fl.
  • Low numbers of Salmonella containing pP pag c-Fl were recovered from spleen tissues (maximum 50 cfu/spleen) and none of the bacterial colonies were ampicillin resistant.
  • a more detailed study was undertaken which involved the enumeration of bacteria in the liver and in mesenteric lymph nodes 11 days after oral dosing.
  • SL3261 containing pP pa ⁇ C -Fl isolated from liver tissues were similar to those isolated from spleens (data not shown) . Whereas the mean number of SL3261 isolated from mesenteric lymph nodes was 2.2x10' cfu, SL3261 containing pP pagC -Fl could be isolated only at low level (mean 20 cfu) from these tissues.
  • mice Groups of 5 or 8 female BALB/c mice were immunised via intragastric intubation on days 0 and 14 with 1 x 10 9 cells of the P ompC -Fl, P p ⁇ cP -Fl, P pagC -Fl or P iacZ -Fl constructs, or the control S. typhimurium strain, SL3261, in 0.1 ml of phosphate- buffered saline (PBS) . Bacteria were grown statically overnight at 37°C. All oral inoculations were carried out with a stainless steel gavage needle without an anaesthetic. The inoculum dose was verified by plating serial dilutions of each culture on L- agar plates with or without ampicillin.
  • PBS phosphate- buffered saline
  • mice On days 21, 28 and 98 mice were anaesthetized by intraperitoneal (i.p.) administration of a cocktail of domitor (6 mg per dose) and Ketalar (27mg per dose) and blood was collected by cardiac puncture. Mice were then sacrificed by cervical dislocation. Blood was allowed to clot at 4°C overnight prior to centrifugation (10,000 x g, 10 min, 4°C) and the serum stored at -20°C until tested.
  • i.p. intraperitoneal
  • Ketalar 27mg per dose
  • mice in all groups developed IgG serum antibody to the carrier bacterium, which reached a maximum level 98 days after immunisation (Fig 3a) .
  • Fig 3a IgG serum antibody to Fl-antigen
  • Fig 3b IgG serum antibody to Fl-antigen
  • the ability of the different recombinant Salmonella to induce a mucosal antibody response after i.g. dosing was determined by measuring the levels of circulating IgA antibody to Fl-antigen or the levels of IgA antibody to Fl-antigen in gut or lung wash samples. After dosing as described in Example 4, on days 21 and 28, gut and lung wash samples were collected. Briefly, gut wash samples were collected by resecting a 10 cm length of small intestine and flushing with 5 ml of PBS. Samples were sonicated for 0.5 min prior to centrifugation (12,000 x g, 30 mins 4°C) and the supernatant was decanted and lyophilized.
  • Broncho-alveolar washings were collected from individual animals by injecting 5 ml of chilled lavage medium (0.9% (w/v) NaCl, 0.05% (v/v) tween 20, 0.1% (w/v) NaN 3 and lmM phenylmethylsulfonyl fluoride) into the trachea using an intravenous canula and inflating the lungs.
  • a syringe was used to remove the washings, which were subsequently centrifuged (12,000 x g, 30 min, 4°C) prior to lyophilisation of the supernatant fluid.
  • Gut and lung wash samples were reconstituted in 200 ⁇ l sterile water immediately before use. All measurements of antibody levels in individual animals were determined in duplicate.
  • ELISAs enzyme-linked immunosorbant assays
  • BLOTTO and 50 ⁇ l volumes were assayed in duplicate in a series of twofold dilutions. After incubation overnight at 4°C, plates were washed three times in PBS with 0.02% (v/v) tween 20. Peroxidase-conjugated secondary antibodies against mouse IgG or IgA (Harlan Sera-Lab Ltd, Loughborough, UK), diluted 1:2000 in BLOTTO were incubated for 1 h at 37°C. The plate was washed as previously and lOO ⁇ l of 2,2'-azino bis (3-ethylbenzthiazoline-6- sulfonic acid) substrate (ABTS; Sigma, Poole, UK) was added. Antibody titre was estimated as the maximum dilution of serum giving an absorbancei 4nm reading 0.1 U above background (Sera from animals immunised with SL3261 alone) .
  • IgG IgG 2a concentrations
  • ELISAs were performed essentially as above, except that wells were coated with lO ⁇ g/ml anti-mouse IgG (Fab-specific, Sigma, Poole, UK) 5 ⁇ g/ml purified
  • Fl-antigen in PBS or 6 ⁇ g/ml S. typhimurium SL3261 lysate Purified IgGi or IgG 2a (Sigma, Poole, UK) and day 98 serum samples were diluted in BLOTTO. Peroxidase-labelled secondary antibodies against mouse IgG ⁇ or IgG 2a were diluted 1:4000 BLOTTO before use .
  • Peyer' s patches were also removed to determine the presence of FI- and Salmonella specific IgA producing cells in the gut.
  • SL3261 containing pP pagC -Fl (Fig 7a).
  • Peyer's patch cells taken from mice which had been immunised with SL3261 / pP pho p-Fl also produced IgA.
  • Cells taken from other groups produced only low levels of IgA to Fl-antigen. This pattern of response was not reflected in the pattern of production of IgA against Salmonella ;
  • Peyer' s patch cells taken from mice which had been immunised with SL3261 / pP pagC -Fl produced only low levels of antibody to Salmonella (Fig 7b) .

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Abstract

A method of enhancing expression of a desired protein at mucosal effector sites, said method comprising placing the protein to be expressed under the control of a promoter having SEQ ID NO 2, SEQ ID NO 3 or SEQ ID NO 4 or a fragment or variant or any of these which has promoter activity, and causing expression in mucosal cells. Constructs used in the methods, as well as suitable recombinant gut-colonising microorganisms such as a Salmonella spp. are also described and claimed. Such organisms are useful in the preparation of vaccines.

Description

Recombinant microorganisms
The present invention relates to recombinant microorganisms, in particular gut-colonising organisms, which are useful for example in the delivery of antigenic material and thus form the basis of vaccines. Vaccines comprising these organisms and promoter sequences for use in them form a further aspect of the invention.
Attenuated mutants of Salmonella typhi (e.g. aroA, aroC, htrA) are currently being evaluated as live, oral vaccines against typhoid fever (Tac et CO, et al., Infect. Immun. 1997;65:452-6). These mutants have also attracted attention as carriers for guest (vaccine) antigens but suitable animal models for testing these vaccines are not available. In view of this, many workers have used Salmonella typhimurium aroA expressing guest antigens for investigating the immune responses induced after oral vaccination of mice.
The unregulated expression of foreign genes within Salmonella species such as S. typhimurium can lead to plasmid instability, yet the stable expression of the guest antigen at the appropriate site in the body is necessary for the induction of a protective response. One approach to promote the stable expression of guest antigens involves the chromosomal integration of the heterologous gene. However, this may reduce the immune response because of gene dosage effects (Covone M G, et al., Infect. Immun. 1998;66:224-31).
The balanced lethal system (Curtiss R III, et al . , Res.
Microbiol. 1990;141:797-805, Nakayama K, et al . , Bio/Technology 1988;6:693-97) relies on the complementation of a lethal mutation by a plasmid which also encodes the guest antigen. Whilst this ensures retention of the plasmid, the gene encoding the guest antigen itself may be deleted. An alternative approach involves the use of promoters which are induced within host tissues to direct guest antigen expression at that site. Because the gene is only expressed after certain environmental cues have been recognised, this approach might reduce the selective pressure towards deleting the gene.
This solution to the problem of expression of guest antigens has also been identified by other workers. A variety of antigens have been expressed in S. typhimurium from the nirB promoter which is upregulated under anaerobic conditions and within host cells (Oxer M D, et al . Nucleic Acids Res. 1991;19:2889-92).
Guest antigens delivered using the nirB promoter system induce superior responses than the same antigens delivered from a constitutive promoter. In addition, the nirB promoter-driven genes were maintained more effectively in the Salmonella host strain. More recently, it has been shown that the htrA and osmC promoter can be used to direct expression of guest antigens in Salmonella (McSorley S J, et al., Infect. Immun. 1997;65:171-78, Roberts M, et al . , Infect. Immun. 1998;66:3080-87). However, it is likely that these promoters will not be suited to the expression of all guest antigens.
Immunisation with the Fl-antigen of Y. pestis has previously been shown to induce an antibody-mediated protective response against plague (Green M, et al . , FEMS Microbiology and Immunology, 1998;23:107-13) and we have previously shown that the Fl-antigen can be expressed in S. typhimurium (Oyston P C F, et al., Infect. Immun. 1995;63:563-68, Titball R , et al., Infect. Immum. 1997;65:1926-30). The antigenic properties of Fl-antigen have been exploited to investigate the ways in which different promoters, which are induced at different sites in the body, can be used to induce different antibody responses to guest antigens expressed in S. typhimurium . It is known that the invasion and spread of S . typhimurium within the host is accompanied by the expression of different subsets of genes which are involved in processes such as attachment and invasion, penetration of the epithelium and the infection of deep lymphoid tissue.
The OmpR/EnvZ two component regulatory system responds to changes in the osmotic strength and pH within S. typhimuri um
(Foster J W, et al . , Microbiology 1994;140:341-52). It has been suggested that this system might play a role in allowing the bacterium to survive in the gut by regulating the expression of outer membrane porins such as OmpC (Pratt L , et al . , American Society for Microbiology, ASM Press, Washington DC, 1995, ppl05- 27, Nikaido H, et al . , Cellular and Molecular Biology. American Society for Microbiology, Washington DC. 1987, pp7-22, Garcia Vescovi E. et al . , Cell. 1996;84:165-74).
The PhoP/PhoQ two-component regulatory system controls virulence properties such as survival within macrophages, resistance to host defence antimicrobial peptides and acid pH, invasion of epithelial cells, the formation of spacious vacuoles and the processing and presentation of antigens by activated macrophages (Miller S I. et al., Proc. Natl. Acad, Sci USA 1989;86:5054-58, Fields P I, et al., Science 1989;243:1059-62, Pegues D A, et al., Mol. Microbiol. 1995;17:169-81, Wick M J, et al . , Mol. Microbiol. 1995;16:465-76), in response to environmental magnesium concentration (Garcia Vescovi E. et al . , Cell. 1996;84:165-74). Over forty genes are regulated by this system in S . typhimurium (Soncini F C, et al., J. Bacteriol. 1996;178:5092-99) including the phoP gene, which is autoregulated (Soncini F C, et al., J. Bacteriol. 1995 ; 177 : 4364- 71) and the pagC gene which encodes an envelope protein required for survival in the macrophage (Alpuche-Aranda C M, et al., Proc. Natl. Acad. Sci. USA 1992;89:10079-83).
Attenuation of Salmonella by partial deletion of the pagC gene and fusion to a heterologous protein is described in USP 5,733,760. The applicants have however found that certain promoters can be used advantageously in such systems to drive high levels of expression of heterologous proteins, in particular in mucosal cells .
Thus, the present invention provides a method of enhancing expression of a desired protein at mucosal effector sites, said method comprising placing the protein to be expressed under the control of a promoter having SEQ ID NO 2, SEQ ID NO 3 or SEQ ID NO 4 or a fragment or variant or any of these which has promoter activity, and causing expression in mucosal cells.
Further according to the present invention, there is provided a construct comprising a promoter selected from the PQmpC, Ppop and Pagc or fragments or variants thereof which can act as promoters, operatively interconnected with a nucleic acid which encodes a protein, able to induce a protective immune response against an organism, in a mammal to which it is administered, wherein said construct contains no further elements of the ompC, phoP or pagC gene .
The present invention further provides a recombinant gut- colonising microorganism which comprises a promoter selected from the Pompc, Phop and Ppagc or fragments or variants thereof which can act as promoters, said promoter being operatively interconnected with a nucleic acid which encodes a heterologous protein, able to induce a protective immune response against a different organism, in a mammal to which it is administered.
In particular, the microorganism has been transformed with the construct described above.
The term 'heterologous protein" refers to proteins which are not native to the microorganism strain. The three promoters (Ppr,op, Ppagc and P0mPc, ) which are included in the organisms of the invention are induced at different stages in the infection process, and hence at different sites in the body. This approach allows the induction of different immune responses which provide protection against pathogens which colonise different host cell compartments. The sequence of these promoters has been elucidated previously, and these are given hereinafter in Figure 6 as SEQ ID NOS 2, 3 and 4 respectively.
Their expression has been compared to that of the constitutively expressed lacZ gene promoter. As a result, recombinant gut- colonising microorganisms wherein antigen expression is driven by Pphop promoter forms a preferred embodiment of the invention.
The development of effective vaccines against pathogens is dependent not only on the identification of the appropriate protective antigens but also on the induction of an immune response at the site in the body which provides maximum protection against disease. For some pathogens, serum antibody provides protection against disease. However, many pathogens enter the body at a mucosal surface and protection against these diseases might therefore be dependent on the induction of mucosal immune responses . The Salmonella vaccine vector system is ideally suited to the delivery of many vaccine antigens since the vaccine delivery mechanism accurately mimics the natural disease, entering the body via the gut.
Thus in particular embodiment, the recombinant gut-colonising microorganism comprises a Salmonella spp . such as Salmonella typhimurium or Salmonella typhi .
The recombinant Salmonella evaluated here showed significant differences in their abilities to induce mucosal IgA antibody responses. Serum IgA levels were not a good predictor of mucosal IgA levels, in accordance with the general findings by other workers that these responses are not well correlated [Lu FX et al., Infect. Immun. 1999;67:6321-8; Russell MW et al . , Infect. Immun. 1991;59:4061-70; and Wenneras C et al . , Infect. Immun. 1999;67:6231-41]. After oral dosing all of the recombinant Salmonella would have entered the body via M-cells, and, if sufficient antigen was subsequently presented to immune effector cells then mucosal antibody responses would be expected. The finding that mucosal antibody in the gut was induced only after immunisation with recombinant Salmonella expressing Fl-antigen from the phoP or pagC gene promoters suggests that these promoters directed high-level expression of Fl-antigen within GALT . Peyer ' s patch cells taken from mice immunised with SL3261 / pPDaσC-Fl or SL3261 / pPpnr-Fl produced the highest levels of IgA supporting this suggestion.
Immunisation with Salmonella containing pPP/cP-Fl also resulted m detectable IgA antibody in the lungs. This is in accordance with the finding that this recombinant also induced the highest levels of IgA m the gut and might indicate that the SL3261 / pPphop-Fl was more effective than SL3261 / pPparC-Fl in inducing long-term expression of IgA.
Recombinant gut-colonismg microorganisms of the invention are suitably attenuated so that the host does not experience significant harmful effects as a result of infection by the microorganism. Examples of attenuated mutants include aro mutants such as aroA and aroC mutants, apartate β-semi-aldehyde dehydrogenase (ASD) mutants, puπne biosynthesis mutants, branched chain ammo acid biosynthesis mutants, galactose epimerase ( galE) mutants, regulatory mutants such as phoP and phoQ mutants, htrA seπne protease mutants and adenyl cyclase mutants. Particular attenuated strains of Salmonella , such as Salmonella typhi include aroA, aroC and htrA. mutants or triple mutants including all three mutations. Recombinant gut-colonising microorganism as described above can be used to deliver a variety of antigenic agents which can be used to induce a protective immune response against a wide range of pathogens. Pathogens which may be targeted in this way are those of humans or animals and include those listed in the Health and Safety Executive: 'Categorisation of Biological Agents according to Hazard and Category of Containment", HMSO, ISBN 0717610381. Particular examples of antigenic agents which may be included in the recombinant organisms of the invention include those protective against tetanus such as tetanus toxin Hc fragment, those protective against Botulinum such as botulinum toxin Hc fragment, those protective against Bacillus anthracis such as Bacillus anthracis protective antigen (PA) , those protective against Bordetella pertussis such as Bordetella pertussis P69 antigen, those protective against Schistoma mansoni such as Schistoma mansoni glutathione-S-transferase, those protective against cholera such as Fibrio cholera β sub- unit, those protective against Herpes simplex virus (HSV) such as HSV glycoprotein D, those protective against HIV infection such as HIV envelope protein, and those protective against
Escherischia coli such as E. coli LTB subunit or E. coli K88 antigen. Other suitable antigenic agents as those protective against Mycrobacterium tuberculosis as well as agents which protects or enhances anti-tumour immunity. In particular, it has been found that where the heterologous protein, is able to induce a protective immune response against Yersinia pestis, useful protective immunity is found. Examples of antigens which can produce such as response include the Fl-antigen of Yersinia pestis or an antigenic fragment or variant thereof, or the V- antigen of Yersinia pestis or combinations thereof as described in WO 96/28551.
The expression "variant" refers to sequences of amino acids which differ from the base sequence from which they are derived in that one or more amino acids within the sequence are substituted for other amino acids. Amino acid substitutions may be regarded as "conservative" where an amino acid is replaced with a different amino acid with broadly similar properties. Non-conservative substitutions are where amino acids are replaced with amino acids of a different type. Broadly speaking, fewer non-conservative substitutions will be possible without altering the biological activity of the polypeptide. Suitably variants will be at least 60% homologous, preferably at least 75% homologous, and more preferably at least 90% homologous to the base sequence. Homology in this instance can be determined using in particular the Needleman-Wunsch algorithm with gap penalty of 8 using a standard PAM scoring matrix (Needleman S.B. and Wunsch CD., J. Mol Biol. 1970, vol 48, 443- 453) .
The recombinant gut-colonising microorganisms described above are thus particularly suitable for use in the preparation of vaccines for therapeutic or prophylactic purposes, where they may be combined with a pharmaceutically acceptable carrier or diluent, as would be understood in the art.
In particular, the vaccines will be formulated so that they are adapted for oral administration and that the microorganism remains viable throughout any storage period . Thus they may preferably be in a form liquid form such as aqueous or oily suspensions, emulsions, syrups or elixirs.
The size of the dose for therapeutic or prophylactic purposes of will vary according to a wide variety of factors including the nature of the protective immune response sought, the nature of the antigen being employed, the severity of the conditions, the dosage regime in terms of primary and secondary boosting, the age and sex of the animal or patient and the gut-colonising ability of the particular microorganism used. In general however, a dosage of microorganism in the range of from 106 to 109 cfu will be administered as a single dosage. Vaccine compositions may further comprise a buffer such as a bicarbonate buffer, in order to neutralise stomach acid.
Thus in a further aspect, the invention provides a method of inducing a protective immune response against a pathogen in a mammal, said method comprising administering to said mammal a recombinant gut-colonising microorganism which comprises a promoter selected from the Pomcr Pphop and Ppagc or fragments or variants thereof which can act as promoters, said promoter being operatively interconnected with a nucleic acid which encodes an antigen protein, able to induce a protective immune response against said pathogen, in a mammal to which it is administered.
In yet a further aspect, the invention provides the use of a promoter selected from Pompc, P op and Ppagc in the production of a vaccine comprising a recombinant gut-colonising organism.
The promoters used in this study are induced at specific sites in the body. They are preferably cloned into the microorganism in a low copy number vector, because high copy number plasmids have been shown to be unstable in S typhimurium (Coulson N M, et al., Microb Pathog. 1994;16:305-11).
The PhoP gene would be expected to be expressed at a basal level from the PhoPp2 promoter and upregulated in the phagosome of host cells as a result of activation of the PhoPpl promoter
(Soncini F C, et al., J. Bacteriol. 1995;177:4364-71). The PhoP / PhoQ regulatory system has been shown to regulate the expression of a variety of genes including pagC, and to be important for survival in macrophages (Miller S I. et al . , Proc. Natl. Acad, Sci USA 1989;86:5054-58, Wick M J, et al . , Mol. Microbiol. 1995;16:465-76).
Genes regulated by the PhoP/PhoQ system are also important for the virulence of orally delivered bacteria (Galan J E, et al., Microb Pathog. 1989;6:433-43) . Expression of the ompC is gene is upregulated under conditions of high osmotic strength (Foster J W, et al., Microbiology 1994;140:341-52, Nikaido H, et al., Cellular and Molecular Biology. American Society for Microbiology, Washington DC. 1987, pp7-22) , such as those found within the gut, under control of the OmpR/EnvZ regulatory system (Pratt L A, et al., American Society for Microbiology, ASM Press, Washington DC, 1995, ppl05-27) .
Whilst the different plasmids in S. typhimurium SL3261 were stable in vitro, there were marked differences in the stability of the plasmids in bacteria which had been delivered to mice by the oral route. Bacteria expressing the Fl-antigen from the PagC promoter showed a much reduced ability to colonise mesenteric lymph nodes and appeared incapable of further invasion of the host. It is possible that the additional copies of the pagC promoter and upstream regulatory regions titrated out the available PhoP activator within the cell, and that this prevented the bacterium from responding to the environmental changes encountered after uptake by M-cells. However, recombinant Salmonella containing the PphoP-Fl plasmid did not show a similar inability to invade the host.
This finding might be in accordance with the suggestion that phoP expression is only partially autoregulated by the phoP gene product (Fields P I, et al., Science 1989;243:1059-62). Additionally, it is possible that the high level of expression of Fl-antigen from the pagC promoter in vivo placed a lethal metabolic load on the host bacterium.
These promoters are regulated by a variety of environmental stimuli in a manner which is not fully defined. Therefore, it is difficult to make meaningful comparisons of the strengths of these promoters in vitro. Thus, in vivo testing of these promoters to identify those most suitable for use for the expression of guest antigens has been carried out. All of the recombinant Salmonella induced similar levels of antibody against the whole bacterium. This finding was unexpected for bacteria containing pPpa C-Fl, since these bacteria were unable to invade deep host tissues and were recovered only at low levels from mesenteric lymph nodes. This recombinant Salmonella also induced IgG and IgA antibody against the Fl- antigen. This suggests that the initial interaction of the bacteria with M-cells is critical in determining the immune response to the bacterium and to guest antigens. This conclusion is supported by the finding that Salmonella containing pPpagC-Fl induced mucosal antibody to the Fl-antigen whereas bacteria expressing the Fl-antigen expressed from the lacZ or ompC promoters failed to induce mucosal responses. Therefore, the measurement of the colonisation of spleen or liver tissues, as an indicator of vaccine potential of recombinant Salmonella, may not always be useful.
Similar conclusions were reached by Covone et al . (Covone M G, et al., Infect. Immun. 1998;66:224-31) who showed that effective delivery of the LTK63 guest antigen to the immune system was effective only when the antigen was delivered during the early stages of invasion and by McSorley et al . (McSorley S J, et al . , Infect. Immun. 1997;65:171-78) who showed that recombinant Salmonella expressing glycoprotein 63 from the osmC promoter were unable to invade tissue beyond the mediastinal lymph nodes, yet induced protection against Leishmania major. This might also explain why killed Salmonella with or without guest antigens, which are clearly not able to invade deep host tissues, are able to induce an immune response (Thatte J, et al., Int. Immunol. 1993;5:1431-36).
The ability of Salmonella expressing Pphop-Fl to induce mucosal antibody responses to the Fl-antigen in both the gut and the lungs, whereas a constitutive promoter
Figure imgf000012_0001
failed to induce such responses clearly demonstrates the utility of in vivo induced promoters for the induction of appropriate antibody responses. This promoter system will be particularly useful for other applications where a mucosal antibody response is important for protection against disease.
The invention will now be particularly described by way of
Example with reference to the accompanying diagrammatic drawings in which:
Figure 1 is a plasmid diagram illustrating plasmids used in the preparation of microorganisms in accordance with the invention;
Figure 2 is a graph showing the levels of colonisation of spleen tissues of mice, 11 days after dosing with recombinant microorganisms of the invention;
Figure 3 shows graphs illustrating IgG serum antibody levels in mice to the carrier bacterium, (Fig 3a) and to the FI antigen (Fig 3b), 21, 28 and 98 days after immunisation;
Figure 4 is a graph showing the isotype of the FI antibody found in mice serum on day 98, where the blank column represents the amount of the IgGla? and the shaded column represents the IgG2a isotype in all groups of immunised animals:
Figure 5 is a graph showing the levels of circulating IgA antibody to Fl-antigen or the levels of IgA antibody to Fl- antigen in gut (blank column) or lung (shaded column) wash samples;
Figure 6 shows sequences of promoters used in the evaluation of the invention; and
Figure 7 shows the results of elispot analysis of Peyer' s patch cells and in particular the IgA response against FI antigen (Figure 7a) and Salmonella (Figure 7b) . Example 1
Preparation of Bacterial strains, cultivation and enzymes Escherichia coli strain M109 and S. typhimurium strains LB5010 (rm* galE) , SL3261 { aroA) or SL1344 (a mouse-virulent strain; (Zhang X, et al., Infect. Immun. 1997;65:5381-7) were cultured on L-agar or in L-broth, supplemented with ampicillin (05μg/ml) where appropriate. Enzymes used for DNA cloning and amplification procedures were obtained from BCL limited (Lewes, Sussex, UK) . PCR reactions were carried out using a Perkin Elmer 9600 (P.E. Applied Biosystems, Warrington, UK) thermal cycler with cycle conditions of 95°C, 5 min, followed by 50 cycles of 95°C, 5s; 45°C, 5s; 72°C, 5s, followed by 10 min at 72°C.
Plasmids containing promoters for expression of Fl-antigen were then produced. The promoters for the phoP, pagC and ompC genes have previously been mapped and upstream regulatory regions identified (Soncini F C, et al . , J. Bacteriol. 1995;177:4364-71, Pulkkinen W S, et al . , J. Bacteriol. 1991;173:86-9, Puente J L, et al., Gene. 1987;61:75-83, Puente J L, et al . , Gene.
1989;83:197-206). For the phoP gene promoter a 139bp DNA fragment was identified which included the phoPpl and phoPp2 gene promoters and 80 bp upstream of the -35 site which has been predicted to form step loop structures (Soncini F C, et al., J. Bacteriol. 1995;177:4364-71). For the pagC gene promote a 715 bp DNA fragment included 125 bp upstream of the -35 region (Pulkkinen W S, et al., J. Bacteriol. 1991;173:86-9). For the ompC gene promoter a 371 bp DNA fragment included a 275 bp region upstream of the -35 region (Puente J L, et al., Gene. 1987;61:75-83, Puente J L, et al . , Gene. 1989;83:197-206).
These DNA fragments were amplified from S. typhimurium strain SL1344 genomic DNA using the PCR. For comparison with a constitutive gene promoter, a 196 bp DNA fragment encoding the lacZ gene promoter and 140 bp upstream of the -35 region was identified. The 3' end of all of the DNA fragments terminated before the SD regions associated with the genes. These promoters were cloned upstream of the cafl open reading frame (encoding the Y". pestis Fl-antigen) and SD region in a low copy number vector (pBR322; Fig 1) and the recombinant plasmids (pPomc-Fl, pPpΛop-Fl, pPpagC-Fl or pPlacZ-Fl ) transformed into S. typhimurium SL3261 (aroA).
Oligonucleotide primers were designed to amplify promoter regions using the PCR (Table 1).
Table 1
Oligonucleotide pair SEQ Prom ID No
5 ' AAGGAAAAAAGCGGCCGCCGCCCAATACGCAAACCG 3' 5 5 ' GAATTCACTAGTATTGTTATCCGCGCTCACAAT 3' 6 Plac
5' AAGGAAAAAAGCGGCCGCTGACTCTGGTCGACGAACTTA 3' 5 ' CTAGTCTAGATGTGTTAACCAATAAGAACAGTCTA 3' PphoP
5 ' AAGGAAAAAAGCGGCCGCTAAACAGACATTCAGAAGTGAATG3' 9 5' CTAGTCTAGAATATGCCTTTATTGCTTTTTTATG 3' 10 PompC
5' AAGGAAAAAAGCGGCCGCGTTAACCACTCTTAATAATAATG 3' 11 5 ' CTAGACTAGTTACTACTTATTATTTACG 3' 12 PpagC
Restriction sites are shown underlined.
The primers included unique Notl , Xbal or Spel sites. Regions amplified included the -10 and -35 regions and upstream regulatory binding sites, but excluded the Shine-Dalgarno (SD) ribosome binding site.
After PCR amplification of the promoter regions from S. typhimurium SL 1344 template DNA (or plasmid pUCl8 template DNA for amplification of the lac promoter) , the DNA fragments were purified using Microcon 100 centrifugal concentrations (Millipore, Watford, UK) . The purified DNA fragments were cloned into suitable digested plasmid pBluescript SK-, electroporated into E. coli JM101 and the cloned fragments were nucleotide sequenced to ensure their authenticity. After digestion of the recombinant plasmids with Sacl and BssHll and agarose gel electrophoresis, DNA fragments containing the promoter regions were purified using Qiaex (Qiagen Ltd, Crawley, UK) and blunt ended using Klenow fragment (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2nα ed. Cold Spring Harbor Laboratory press, New York) .
The authentic promoter sequences were then cloned into plasmid pBR322 which had been digested with £coRl and Nrul and then blunt ended using Klenow fragment (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2nα ed. Cold Spring Harbor Laboratory press, New York) . The orientation of the cloned DNA fragment in the plasmid was determined by analysing, using agarose gel electrophoresis, the DNA fragments obtained after digestion with Xbal , Sspl or Styl .
A DNA fragment which encoded the Cafl open reading frame and the ribosome binding site was isolated after digestion of plasmid pORFl (Oyston P C F, et al . , Infect. Immun. 1995;63:563-68) with EcoRl followed by blunt ending of the DNA and further digestion with ifindlll . The purified DNA fragment was ligated with promoter plasmids with which had been digested with Smal and Hindlll. The final recombinant plasmids were transformed into E. coli strain M109.
Plasmids were isolated from E. coli (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory press, New York) and electroporated into S. typhimurium SL3281 (aroA) after passage through S. typhimurium LB5010 to ensure methylation of the DNA.
Example 2 The stability of the different plasmids encoding Fl-antigen driven from different promoters in 5. typhimurium SL3261 was determined after culture of the bacteria in L-broth for 24hr {in vi tro stability) and enumeration of bacteria which grew on L- agar or L-agar containing amplicillin (Sambrook J, Frtisch E F, Maniatis T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory press, New York) . The results indicated that all of the plasmids were retained by at least 80% of the bacteria which had been cultured in vitro (pPDmpC-Fl, 83%; pPphoP-Fl, 100%; pPpagC-Fl, 98%; pPJac2-Fl, 95%).
Example 3
Colonisation of host tissues
The in vivo stability of plasmids was determined by inoculating groups of 10 female BALB/c mice orally with 109 cfu of bacteria in lOOμl of PBS, and enumerating bacteria isolated 11 days later from homogenised spleen tissue on L-agar or L-agar + ampicillin.
In the case of the PpagC-Fl construct and the S. typhimurium SL3261 control strain, bacteria were also cultured from mesenteric lymph nodes (10/mouse) each homogenised in 2ml of PBS or from homogenised liver tissue which were removed on 11 days after dosing. Bacteria were enumerated bacteria as described above .
With the exception of the bacteria containing the PpagC-Fl plasmid and the SL3261 control bacteria, ampicillin-resistant bacteria could be recovered from all of the spleens isolated from orally dosed mice. The in vivo stability of all of the plasmids within Salmonella was lower than the stability of the plasmids within Salmonella cultured in vitro.
Although mice were dosed orally with similar numbers of bacteria there were marked differences in the level of colonisation of spleen tissues at day 11 (Fig 2) . The highest levels of colonisation were found with bacteria containing pPDj,Dp-Fl. Low numbers of Salmonella containing pPpagc-Fl were recovered from spleen tissues (maximum 50 cfu/spleen) and none of the bacterial colonies were ampicillin resistant. To investigate why the presence of the pPpa7C-Fl affected the colonising ability of this Salmonella , a more detailed study was undertaken which involved the enumeration of bacteria in the liver and in mesenteric lymph nodes 11 days after oral dosing. The levels of SL3261 containing pPpaσC-Fl isolated from liver tissues were similar to those isolated from spleens (data not shown) . Whereas the mean number of SL3261 isolated from mesenteric lymph nodes was 2.2x10' cfu, SL3261 containing pPpagC-Fl could be isolated only at low level (mean 20 cfu) from these tissues.
Example 4
Serum antibody responses to Fl -antigen
Groups of 5 or 8 female BALB/c mice were immunised via intragastric intubation on days 0 and 14 with 1 x 109 cells of the PompC-Fl, PpήcP-Fl, PpagC-Fl or PiacZ-Fl constructs, or the control S. typhimurium strain, SL3261, in 0.1 ml of phosphate- buffered saline (PBS) . Bacteria were grown statically overnight at 37°C. All oral inoculations were carried out with a stainless steel gavage needle without an anaesthetic. The inoculum dose was verified by plating serial dilutions of each culture on L- agar plates with or without ampicillin.
On days 21, 28 and 98 mice were anaesthetized by intraperitoneal (i.p.) administration of a cocktail of domitor (6 mg per dose) and Ketalar (27mg per dose) and blood was collected by cardiac puncture. Mice were then sacrificed by cervical dislocation. Blood was allowed to clot at 4°C overnight prior to centrifugation (10,000 x g, 10 min, 4°C) and the serum stored at -20°C until tested.
After i.g. dosing with the recombinant Salmonella , mice in all groups developed IgG serum antibody to the carrier bacterium, which reached a maximum level 98 days after immunisation (Fig 3a) . In the case of ΞL3261 expressing PDr_?-Fl, the onset of the immune response was delayed. All groups of mice developed IgG serum antibody to Fl-antigen (Fig 3b), which had reached a peak at day 28 and declined by day 98. There was no significant difference in the peak titres to Fl-antigen induced by the different recombinant Salmonella .
When the isotype of this antibody was determined on day 98, it was found to be predominantly of an IgG2a isotype in all groups of immunised animals (Fig 4), suggesting that a Thl-type response was induced. Several other workers have shown that recombinant S. typhimurium induce a Thl-type response to the guest antigen (Brett S J, et al., Immunology 1993;80:306-12, Thatte J, et al., Int. Immunol. 1993;5:1431-36).
Example 5 Mucosal antibody responses to Fl-antigen
The ability of the different recombinant Salmonella to induce a mucosal antibody response after i.g. dosing was determined by measuring the levels of circulating IgA antibody to Fl-antigen or the levels of IgA antibody to Fl-antigen in gut or lung wash samples. After dosing as described in Example 4, on days 21 and 28, gut and lung wash samples were collected. Briefly, gut wash samples were collected by resecting a 10 cm length of small intestine and flushing with 5 ml of PBS. Samples were sonicated for 0.5 min prior to centrifugation (12,000 x g, 30 mins 4°C) and the supernatant was decanted and lyophilized. Broncho-alveolar washings were collected from individual animals by injecting 5 ml of chilled lavage medium (0.9% (w/v) NaCl, 0.05% (v/v) tween 20, 0.1% (w/v) NaN3 and lmM phenylmethylsulfonyl fluoride) into the trachea using an intravenous canula and inflating the lungs. A syringe was used to remove the washings, which were subsequently centrifuged (12,000 x g, 30 min, 4°C) prior to lyophilisation of the supernatant fluid. Gut and lung wash samples were reconstituted in 200μl sterile water immediately before use. All measurements of antibody levels in individual animals were determined in duplicate. For enzyme-linked immunosorbant assays (ELISAs) to determine IgG and IgA titres, 96-well microtiter plates were coated overnight at 4°C either with 50μl 5μg/ml purified Fl-antigen (Miller J, et al., FEMS Microbiology and
Immunology 1998;21:213-21) in PBS or with 50μl 6μg/ml S. typhimurium SL3261 lysate in PBS, prepared as follows. Bacteria were grown statically overnight at 37°C, prior to harvesting and resuspension in PBS to an approximate concentration of 1 x 1010 cfu/ml. Cells were heat-killed in a boiling water bath for 30 min, cooled on ice and then sonicated on ice for 6 pulses of 30 s. Total protein concentration was determined by a BCA protein assay (Pierce and Warriner, Chester, UK) . Plates were blocked for 1 h at 37°C with PBS containing 1% (w/v) skimmed milk powder (BLOTTO) . Serum, gut and lung wash samples were diluted in
BLOTTO and 50μl volumes were assayed in duplicate in a series of twofold dilutions. After incubation overnight at 4°C, plates were washed three times in PBS with 0.02% (v/v) tween 20. Peroxidase-conjugated secondary antibodies against mouse IgG or IgA (Harlan Sera-Lab Ltd, Loughborough, UK), diluted 1:2000 in BLOTTO were incubated for 1 h at 37°C. The plate was washed as previously and lOOμl of 2,2'-azino bis (3-ethylbenzthiazoline-6- sulfonic acid) substrate (ABTS; Sigma, Poole, UK) was added. Antibody titre was estimated as the maximum dilution of serum giving an absorbancei4nm reading 0.1 U above background (Sera from animals immunised with SL3261 alone) .
To determine IgG:, or IgG2a concentrations, ELISAs were performed essentially as above, except that wells were coated with lOμg/ml anti-mouse IgG (Fab-specific, Sigma, Poole, UK) 5μg/ml purified
Fl-antigen in PBS or 6μg/ml S. typhimurium SL3261 lysate. Purified IgGi or IgG2a (Sigma, Poole, UK) and day 98 serum samples were diluted in BLOTTO. Peroxidase-labelled secondary antibodies against mouse IgGχ or IgG2a were diluted 1:4000 BLOTTO before use . The results (Fig 5) indicated that SL3261 containing pPpnop-Fl, pPjacz-Fl or pPpag-Fl plasmids all induced serum IgA antibody to F-antigen. The induction of circulating IgA to Fl-antigen did not correlate with the presence of IgA to Fl-antigen at mucosal surfaces. For example, SL3261 / pPJacZ-Fl induced high levels of serum antibody to Fl-antigen but IgA antibody to Fl-antigen was not detected in gut or lung wash samples. Only SL3261 / pPphoj>-Fι induced an IgA antibody response to Fl-antigen in both the gut and the lung.
Example 6
Production of IgA by Peyer' s patch cells
Peyer' s patches were also removed to determine the presence of FI- and Salmonella specific IgA producing cells in the gut.
Briefly, a total of 8 Peyer' s patches were removed from 5 mice in each treatment group (see Example 4) and pooled. Cells were separated by crushing through a cell strainer, washed by centrifugation and resuspended in 1.4ml of Dulbeccos Modified Eagles Medium (DMEM) + 10% foetal calf serum (FCS). Duplicate samples (lOOμl/well) were then plated onto plates previously coated with 5μl/ml FI or 6μg/ml S. typhimurium SL3261 lysate and blocked with 20% FCS in DMEM, and incubated for 48hours at 37°C. Plates were washed and incubated for 1 hour with peroxidase- labelled secondary antibody against mouse IgA, diluted 1:2000 in PBS before use, and developed with lOOμl of ABTS.
The results are shown in Figure 7. These show showed that the secretion of IgA against Fl-antigen was greatest in Peyer 's patch cells isolated from mice which had been immunised with
SL3261 containing pPpagC-Fl (Fig 7a). Peyer's patch cells taken from mice which had been immunised with SL3261 / pPphop-Fl also produced IgA. Cells taken from other groups produced only low levels of IgA to Fl-antigen. This pattern of response was not reflected in the pattern of production of IgA against Salmonella ; Peyer' s patch cells taken from mice which had been immunised with SL3261 / pPpagC-Fl produced only low levels of antibody to Salmonella (Fig 7b) .

Claims

Claims
1. A method of enhancing expression of a desired protein at mucosal effector sites, said method comprising placing the protein to be expressed under the control of a promoter having SEQ ID NO 2, SEQ ID NO 3 or SEQ ID NO 4 or a fragment or variant or any of these which has promoter activity, and causing expression in mucosal cells.
2. A construct comprising a promoter selected from the P0mPcr Pphop and Ppagc or fragments or variants thereof which can act as promoters, operatively interconnected with a nucleic acid which encodes a protein, able to induce a protective immune response against an organism, in a mammal to which it is administered, wherein said construct contains no further elements of the ompC, phoP or pagC gene.
3. A recombinant gut-colonising microorganism which has been transformed with a construct according to claim 2.
4. A recombinant gut-colonising microorganism according to claim 3 wherein said protein is heterologous to said microorganism.
5. A recombinant gut-colonising microorganism according to claim 4 or claim 4 wherein the promoter is Pphop promoter.
6. A recombinant gut-colonising microorganism according to claim 3 or claim 4 wherein the promoter is Ppaac promoter.
7. A recombinant gut-colonising microorganism according to any one of claims 3 to 6 which comprises a Salmonella spp.
8. A recombinant gut-colonising microorganism according to claim 7 wherein the Salmonella spp. is Salmonella typhimurium or Salmonella typhi .
9. A recombinant gut-colonising microorganism according to any one claims 3 to 8 wherein the gut-colonising microorganism is attenuated.
10. A construct according to claim 2 or a recombinant gut- colonising microorganism according to any one of claims 3 to 9 wherein the heterologous protein, is able to induce a protective immune response against Yersinia pestis .
11. A construct or a recombinant gut-colonising microrganism according to claim 10 wherein the said heterologous protein comprises an Fl-antigen of Yersinia pestis or an antigenic fragment or variant thereof.
12. A vaccine comprising a recombinant gut-colonising microorganism according to any one claims 3 to 11.
13. A vaccine according to claim 12 which f rther comprises a pharmaceutically acceptable carrier or diluent.
14. A vaccine according to claim 12 or claim 13 which is adapted for oral administration.
15. A method of inducing a protective immune response against a pathogen in a mammal, said method comprising administering to said mammal a recombinant gut-colonising microorganism according to any one of claims 3 to 11.
16. The use of a promoter selected from P0mP , PPhop and Ppagc in the production of a vaccine comprising a recombinant gut- colonising organism.
PCT/GB2000/003402 1999-09-10 2000-09-06 Recombinant microorganisms WO2001019974A2 (en)

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CA002382067A CA2382067A1 (en) 1999-09-10 2000-09-06 Recombinant microorganisms
US10/070,882 US7524507B1 (en) 1999-09-10 2000-09-06 Recombinant microorganisms
AU70206/00A AU777298B2 (en) 1999-09-10 2000-09-06 Recombinant microorganisms
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US7758855B2 (en) 2003-09-18 2010-07-20 The United States Of America As Represented By The Department Of Health And Human Services DNA promoters and anthrax vaccines
US8247225B2 (en) 2003-09-18 2012-08-21 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services DNA promoters and anthrax vaccines
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WO2007082734A2 (en) * 2006-01-17 2007-07-26 Creatogen Laboratories Gmbh Influenza vaccine
WO2007082734A3 (en) * 2006-01-17 2007-10-04 Creatogen Lab Gmbh Influenza vaccine
CN112546210A (en) * 2020-12-15 2021-03-26 南京农业大学 Preparation method and application of salmonella inactivated vaccine

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