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WO2001007664A3 - Genome analysis - Google Patents

Genome analysis Download PDF

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Publication number
WO2001007664A3
WO2001007664A3 PCT/US2000/020430 US0020430W WO0107664A3 WO 2001007664 A3 WO2001007664 A3 WO 2001007664A3 US 0020430 W US0020430 W US 0020430W WO 0107664 A3 WO0107664 A3 WO 0107664A3
Authority
WO
WIPO (PCT)
Prior art keywords
materials
mapping
provides methods
genome analysis
genome
Prior art date
Application number
PCT/US2000/020430
Other languages
French (fr)
Other versions
WO2001007664A2 (en
Inventor
Patrick S Schnable
Xiangqin Cui
Original Assignee
Univ Iowa State Res Found Inc
Patrick S Schnable
Xiangqin Cui
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ Iowa State Res Found Inc, Patrick S Schnable, Xiangqin Cui filed Critical Univ Iowa State Res Found Inc
Priority to AU63820/00A priority Critical patent/AU6382000A/en
Publication of WO2001007664A2 publication Critical patent/WO2001007664A2/en
Publication of WO2001007664A3 publication Critical patent/WO2001007664A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/172—Haplotypes

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention involves methods and materials related to the analysis of an organism"s genome. Specifically, the invention provides methods and materials for identifying genomic markers, mapping genomic markers, and identifying genomic sequences that contribute to specific traits. For example, the invention provides methods and materials that can be used to assign functions to genes by genetically mapping a large collection of nucleic acid fragments such as sequence-defined cDNAs.
PCT/US2000/020430 1999-07-27 2000-07-27 Genome analysis WO2001007664A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU63820/00A AU6382000A (en) 1999-07-27 2000-07-27 Genome analysis

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US14572099P 1999-07-27 1999-07-27
US60/145,720 1999-07-27

Publications (2)

Publication Number Publication Date
WO2001007664A2 WO2001007664A2 (en) 2001-02-01
WO2001007664A3 true WO2001007664A3 (en) 2002-05-30

Family

ID=22514256

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2000/020430 WO2001007664A2 (en) 1999-07-27 2000-07-27 Genome analysis

Country Status (2)

Country Link
AU (1) AU6382000A (en)
WO (1) WO2001007664A2 (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6831186B2 (en) 2001-11-06 2004-12-14 Schering Aktiengesellschft Lipoxin A4 analogs
US20110105347A1 (en) * 2007-05-17 2011-05-05 Monsanto Technology Llc Corn polymorphisms and methods of genotyping
WO2009086500A1 (en) 2007-12-28 2009-07-09 Pioneer Hi-Bred International, Inc. Using structural variation to analyze genomic differences for the prediction of heterosis
WO2013106737A1 (en) * 2012-01-13 2013-07-18 Data2Bio Genotyping by next-generation sequencing

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0785280A2 (en) * 1995-11-29 1997-07-23 Affymetrix, Inc. (a California Corporation) Polymorphism detection
WO1998053103A1 (en) * 1997-05-21 1998-11-26 Clontech Laboratories, Inc. Nucleic acid arrays
EP0892068A1 (en) * 1997-07-18 1999-01-20 Genset Sa Method for generating a high density linkage disequilibrium-based map of the human genome
WO1999014373A1 (en) * 1997-09-17 1999-03-25 Yale University Method for selection of insertion mutations

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0785280A2 (en) * 1995-11-29 1997-07-23 Affymetrix, Inc. (a California Corporation) Polymorphism detection
WO1998053103A1 (en) * 1997-05-21 1998-11-26 Clontech Laboratories, Inc. Nucleic acid arrays
EP0892068A1 (en) * 1997-07-18 1999-01-20 Genset Sa Method for generating a high density linkage disequilibrium-based map of the human genome
WO1999014373A1 (en) * 1997-09-17 1999-03-25 Yale University Method for selection of insertion mutations

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
DESPREZ T ET AL: "DIFFERENTIAL GENE EXPRESSION IN ARABIDOPSIS MONITORED USING CDNA ARRAYS", PLANT JOURNAL, BLACKWELL SCIENTIFIC PUBLICATIONS, OXFORD, GB, vol. 14, no. 5, June 1998 (1998-06-01), pages 643 - 652, XP000960485, ISSN: 0960-7412 *
DUGGAN D J ET AL: "EXPRESSION PROFILING USING CDNA MICROARRAYS", NATURE GENETICS, NEW YORK, NY, US, vol. 21, January 1999 (1999-01-01), pages 10 - 14, XP002928675, ISSN: 1061-4036 *
NG W-L ET AL.: "High-density cDNA array expression mapping of human ovarian tumors", PROCEEDINGS OF THE AMERICAN ASSOCIATION OF CANCER RESEARCH, vol. 37, March 1996 (1996-03-01), pages 517, XP001041580 *
RAMSAY G: "DNA CHIPS: STATE-OF-THE ART", NATURE BIOTECHNOLOGY, NATURE PUBLISHING, US, vol. 16, January 1998 (1998-01-01), pages 40 - 44, XP002924764, ISSN: 1087-0156 *
SAPOLSKY R J ET AL: "High-throughput polymorphism screening and genotyping with high-density oligonucleotide arrays", GENETIC ANALYSIS: BIOMOLECULAR ENGINEERING, ELSEVIER SCIENCE PUBLISHING, US, vol. 14, no. 5-6, February 1999 (1999-02-01), pages 187 - 192, XP004158703, ISSN: 1050-3862 *
SCHENA M: "GENOME ANALYSIS WITH GENE EXPRESSION MICROARRAYS", BIOESSAYS, CAMBRIDGE, GB, vol. 18, no. 5, 1996, pages 427 - 431, XP002916033, ISSN: 0265-9247 *

Also Published As

Publication number Publication date
WO2001007664A2 (en) 2001-02-01
AU6382000A (en) 2001-02-13

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