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WO2001098522A2 - Analogues d'acides nucleiques peptidiques charges positivement a proprietes ameliorees - Google Patents

Analogues d'acides nucleiques peptidiques charges positivement a proprietes ameliorees Download PDF

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Publication number
WO2001098522A2
WO2001098522A2 PCT/IL2001/000570 IL0100570W WO0198522A2 WO 2001098522 A2 WO2001098522 A2 WO 2001098522A2 IL 0100570 W IL0100570 W IL 0100570W WO 0198522 A2 WO0198522 A2 WO 0198522A2
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pna
group
compound
protected
oligomer
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PCT/IL2001/000570
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WO2001098522A3 (fr
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Jehoshua Katzhendler
Ada Schlossman
Yousuf Najajreh
Dan Gibson
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Yissum Research Development Company Of The Hebrew University Of Jerusalem
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Priority to EP01945577A priority Critical patent/EP1292606A4/fr
Priority to US10/297,788 priority patent/US7671036B2/en
Priority to CA002413556A priority patent/CA2413556A1/fr
Priority to JP2002504670A priority patent/JP2004520261A/ja
Priority to IL15352501A priority patent/IL153525A0/xx
Priority to AU67788/01A priority patent/AU784561B2/en
Publication of WO2001098522A2 publication Critical patent/WO2001098522A2/fr
Publication of WO2001098522A3 publication Critical patent/WO2001098522A3/fr

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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/001—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof by chemical synthesis
    • C07K14/003—Peptide-nucleic acids (PNAs)
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00—Drugs for disorders of the nervous system
    • A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00—Drugs for disorders of the cardiovascular system
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides

Definitions

  • the present invention relates to novel types of peptide nucleic acids (PNAs) with improved properties.
  • PNAs peptide nucleic acids
  • it relates to positively charged PNA units having an ethylene linker between the backbone and the nucleobase, to oligonucleotide analogs containing these units, to oligomers comprising these units, and to the use of positively charged PNAs as novel delivery agents with therapeutic and diagnostic applications including for antisense therapy.
  • Synthetic antisense oligonucleotides have been used to inhibit DNA replication and protein synthesis with very high specificity (1 ' 2) .
  • Various inhibition mechanisms have been proposed including:
  • the phosphorothioate (3) analogues have some potential advantages since they (i) form relatively stable duplexes with RNA (-0.1° to -1° per modification); (ii) activate RNaseH degradation; (iii) are stable to cleavage by nucleases, and (iv) are stable to base catalyzed hydrolysis .
  • Phosphorodithioates are also quite resistant to nuclease activity however they have little advantages over phosphorothioate derivatives for antisense applications ⁇ . Like the phosphorothioates, methylphosphonates are normally obtained as mixtures.
  • methylphosphonates do not activate RNaseH (4) , they are uncharged and display (i) increased hydrophobicity, (ii) increased cell membrane permeability and (c) nuclease resistance.
  • O-alkylphosphotriesters(O-Et) (6) these oligomers strongly hybridize to RNA and closely conform to the helical conformation of natural ⁇ - phosphodiester DNA (self- complementary duplexes are substantially less stable (7) ).
  • PNA polyamide nucleic acid
  • PNAs are the first successful substitute for the sugar-phosphate backbone that have displayed equal or better binding affinity than natural DNA or RNA (8) .
  • PNAs do not bear any structural resemblance to natural oligonucleotides.
  • PNAs bind to an oligonucleotide sequence either via a parallel mode where the PNA amino terminus is aligned with the 5' end of DNA or via an anti parallel mode (aligned with the 3 end).
  • Hybridization through the antiparallel mode was found to be significantly more stable than the corresponding parallel hybrid and impart an extra Tm stability of 1.45°/modification and 1°- 1.2° /modification for PNA-RNA and PNA-DNA duplexes, respectively.
  • the alternative parallel binding mode is still as stable as DNA- RNA or DNA-DNA duplexes, formed by displacing the homopyrimidine DNA stretch from the DNA du ⁇ lex (9) .
  • PNAs Transcription inhibition by PNAs can occur either by triple helix formation or by strand displacement in which the PNA displaces one DNA strand in the DNA duplex to form a PNA-DNA hybrid. Following this, by binding to a further PNA oligomer, a local (PNA) 2 -
  • DNA triple helix can be formed for certain sequences. Both PNA strands must be oriented either parallel or antiparallel to the DNA strand.
  • Proline PNA Cyclohexyl PNA Compound A represents the original structure (Nielsen) of a PNA unit where the backbone part is composed of N- (2-aminoethyl) glycine chain and the nucleobase is tethered through an amide bond to the inner amino group. Such a highly hydrophobic system is of course of low solubility and consequently of diminished cell permeation ability.
  • Compounds B and C and D represents a new polyamide backbone where the carboxylic moiety is replaced by phosphono (B,C) and phosphoro (D) groups to attain a more hydrophilic ribbon cord with a resistant to nucleases degradation (10) .
  • compounds C and D consist of a delta hydroxy acid backbone. This allows chain elongation by methods adopted in solid phase synthesis of oligonucleotide.
  • Compound E which consist an delta amino acid was designed as an ether analogue to afford the main chain sufficient flexibility and an improved water solubility (10) .
  • OPNA OPNA
  • the presence of a chiral center in the backbone structure extend chemical diversity.
  • Structures F-H are true peptide nucleic acids analogues bearing nucleobases linked through an ethylene chain to C-l and the amino group N of glycine and to C-4 (Trans) of proline in F,G,H respectively"- 1 !) .
  • Compound I is a chiral Delta-amino acid PNA with a partly conformationally constrained backbone derived of cyclohexyl moiety (12) .
  • PNA analog in which the linkage of the a nucleobase to the interior amino group of the PNA unit is via an ethylene bridge has previously been described for thymine (13) .
  • the synthesis of this derivative was accomplished from protected N,N-Bis-2- ethylamino glycine and acylisocyanate, which does not afford a general method of synthesizing other units. More importantly, it was demonstrated in that study that the positively charged PNA analog had inferior properties compared to regular PNA units (reviewed by Falkiewicz, 1999, Ref. 14). This disclosure teaches away from the use of positively charged PNA analogs altogether.
  • Rl is hydrogen or a protecting group suitable for protecting an amino group
  • R2 is hydrogen or a protecting group suitable for the protection of a carboxyl group
  • Bn is a protected or unprotected, natural or non-natural nucleobase other than thymine.
  • Rl is hydrogen or a protecting group selected from the group consisting of Monomethoxytrityl (MMT), Dimethoxytrityl (DMTr), Fluorenyloxycarbonyl (Fmoc), tert- Butyloxycarbonyl (t-BOC), Phthalimide (Pht), and Tetrachlorophthalimide (TPht); and R2 is hydrogen or a protecting group selected from the group consisting of Methyl (Me), Ethyl (Et), Pro ⁇ yl(Prop), tert-Butyl (t-Bu), Benzyl (Bnz), Monomethoxytrityl (MMT).
  • MMT Monomethoxytrityl
  • DMTr Dimethoxytrityl
  • Fmoc Fluorenyloxycarbonyl
  • t-BOC tert- Butyloxycarbonyl
  • Phthalimide Phthalimide
  • TPht Tetrachlorophthalimide
  • Additional more preferred embodiments according to the present invention are compounds of the general formula (I) wherein Bn is selected from the group consisting of guanine or protected guanine (Gu); pseudo-guanine or protected pseudo-guanine (2,6- diaminopurine); adenine or protected adenine (Ad); cytosine or protected cytosine (C); pseudo-cytosine or protected pseudo-cytosine, pseudo-isocytosine or protected pseudo- isocytosine; uracil or protected uracil (U) and protected thymine (T).
  • Suitable protecting groups for guanine and pseudoguanine include but are not limited to those wherein the protecting group for the hydroxyl (R 5 ) is selected from the group consisting of diphenylcarbamoyl (DPC), and Benzyl (Bnz), and the protecting group for an amino group of the guanine (R ⁇ ) is selected from the group consisting of i-Butyryl (iBu), acetyl (Ac), and benzoyl (Bz).
  • Most preferred compounds according to the present invention are compounds of the general formula (I) wherein Bn is selected from the group consisting of adenine or protected adenine, cytosine or protected cytosine, guanine or protected guanine.
  • Bn is selected from the group consisting of adenine or protected adenine, cytosine or protected cytosine, guanine or protected guanine.
  • Compounds of the general formula (I) with or without protecting groups comprise positively charged PNA units having an ethylene linker between the backbone and the nucleobase, are collectively designated herein and in the claims as IP-PNA, having improved properties compared to previously known polyamide (peptide) nucleic acid analogs.
  • oligomers comprising at least one peptide nucleic acid analog of the general formula (I). It will be appreciated by the skilled artisan that in such an oligomer the groups Rl and R2 are replaced by covalent bonds between adjacent monomer units.
  • oligomers comprising a plurality of peptide nucleic acid analogs of the general formula (I), wherein Bn may be any natural or non-natural nucleobase, including thymine are disclosed and claimed. It will be appreciated by the skilled artisan that in such an oligomer the groups Rl and R2 are replaced by covalent bonds between adjacent monomer units.
  • the nucleobase of a given monomer is independent of the nucleobase used at any other position in the oligomer.
  • the oligomers are conjugated to polyethyleneglycol to improve their pharmacokinetics .
  • oligomers included within the scope of the invention are: a) an oligomer wherein short sequences of IP-PNA units are incorporated at one or both termini (3' and/or 5') into oligomers comprising from about 10 to30 ordinary PNA units, as depicted by the sequence:
  • A-A-A(n)-A-A-IP-PNA-IP-PNA-IP-PNA-X wherein A is any known PNA unit; n is a number from about 5 to 25; IP-PNA is a compound of the general formula (I) from which all protecting groups have been removed; and X is selected from the group consisting of a free carboxylic acid, a reduced carboxylic group (alcohol) or PEG; b) an oligomer comprising only IP-PNA units incorporated into a sequence of from about 10 to about 30 nucleobases, as depicted by the sequence:
  • IP-PNA-IP-PNA-IP-PNA(m)-IP-PNA-X wherein m is number of about 6 to about 26, and X is as defined above; c) an oligomer comprising alternating units of IP-PNA monomers and PNA moomers as depicted by the sequence:
  • A-IP-PNA-A-IP-PNA- (A-IP-PNA)m-A-IP-PNA-X wherein A, IP-PNA, m and X are as defined above.
  • compositions comprising as an active ingredient an oligomer comprising a plurality of IP-PNA units.
  • Another aspect of the present invention relates to use of oligomers comprising IP- PNA units as antisense molecules.
  • Another aspect of the present invention relates to the use of oligomers comprising IP-PNA units for translational arrest.
  • Another aspect of the present invention relates to the use of oligomers comprising
  • IP-PNA units for CNS specific targeting of antisense molecules.
  • Another aspect of the present invention relates to the use of oligomers comprising IP-PNA units for neuronal targeting of antisense molecules.
  • IP- PNAs have improved properties compared to previously known Peptide nucleic acid (PNA). IP-PNAs are positively charged water-soluble molecules, with improved cellular uptake as well as lysosomotropic properties, enhancing their biological properties.
  • IP- PNA are cationic molecules that have a lysosomotropic property, therefore, they can provide unique value as vectors for transport across the BBB and intraneuronal delivery.
  • Figure 1 Molecular modeling of PNA and IP-PNA annealing to DNA
  • polypeptides and oligonucleotides are generally considered to be of limited therapeutic value. This is an obstacle in both biomedical research and pharmaceutical industry. Until recently, the intracellular administration of bioactive molecule was restricted to small hydrophobic ones, and administration of hydrophilic macromolecules required disruption of plasma membrane.
  • the blood-brain barrier represents a very complex endothelial interface, which separates the blood compartment from the extracellular fluid compartment of the brain parenchyma.
  • the BBB consists of a monolayer of polarized endothelial cells connected by complex tight junctions 15 .
  • Lipid solubility Good correlation exists between the lipid solubility of a drug and its ability to penetrate or diffuse across the BBB 16 .
  • Size The BBB will also prevent the passage of ionized water-soluble molecules with a molecular weight of more than 500 Da, impeding the delivery of 95% of drugs to the brain.
  • BBB penetration 17 Disruption of the BBB by hyperosmotic shock induced by infusion of hypertonic solution (mannitol) or, by administration of biologically active agents such as bradykinin, angiotensin and RMP-7.
  • Drug modification It is believed that the ability of a drug to cross the BBB by passive diffusion is a function of lipophilicity and hydrogen bonding potential 18 .
  • Tat is a transcription factor involved in the replication of HIV. It has been found that one of its functional domains 49-58 amino acids) is responsible for nuclear import. Tat appears in a secreted form, which is then re-internalized by live cells in a time and concentration-dependent manner.
  • Tat-derived short peptide could cross the blood brain barrier and deliver active protein into the brain.
  • the potential of this approach as an effective delivery system for transporting drugs across the BBB has been demonstrated in animal models by an in situ brain perfusion model in rats and by intravenous injection into mice 19,20 .
  • Antisense delivery into the brain has been demonstrated in animal models by an in situ brain perfusion model in rats and by intravenous injection into mice 19,20 .
  • ODNs Antisense oligodeoxynucleotides
  • PNAs oligodeoxynucleotides
  • Unmodified (naked) ODNs and PNAs are unable to cross the BBB in vivo. Therefore, it is necessary to administer them directly into either the cerebral ventricles or a particular intracerebral site.
  • ODNs are rapidly degraded in the brain while phosphorothioate (PS)-ODNs are rapidly cleared via cerebrospinal fluid bulk flow and consider to be neurotoxic at therapeutic concentration greater than l ⁇ M ' ). Therefore, if antisense molecules are to be effective therapeutics for CNS disorders, it is necessary to conjugate them to delivery systems.
  • the delivery systems develop so far were limited by:
  • PNAs retain affinity for target RNA despite conjugation to the BBB drug targeting system. Apart from complexity and the potential immunogenic properties of such a vector, this approach will unlikely be active in vivo without an endosomal release function built into it 26 . Other new technologies still need to overcome some major obstacles. Factors such as metabolic stability, plasma protein binding, intracellular compartmentation and cell membrane transport need to be considered if the promise of antisense therapeutics to become a neuropharmacology reality.
  • PNA-based antisense should be delivered into the brain either via absorptive mediated transcytosis or via carrier peptides (modified/or unmodified).
  • Cationic molecule can induce leakage from endosomes, therefore, it enhances trans-membrane penetration and localization to the subcellular compartment containing the nucleic acid targets.
  • PEG poly-ethyleneglycol
  • the final product should be simple for synthesis and modifications. 7 Relative specificity: Similar to certain small molecules, and if effort of optimizing BBB entry, the final product (lead compound) may be specific enough therapeutically even though not as specific as the original PNA.
  • IP-Antisense IP-Antisense
  • ethT tertiary amine-modified PNA
  • the modified PNA was incorporated in the middle of a PNA decamer and the effect of this modification on Duplex motif and Triplex motif were examined. It was found that this modified PNA decreased the stability of PNA-DNA complexes. However, despite the lower stability, the thymine in the ethT analog specifically recognized the complementary adenine in the DNA strand since mismatches cause a further decrease in Tm. We have synthesized the other nucleotides as well, and developed a simple procedure for the synthesis of these modified PNAs.
  • IP-PNA modified PNA
  • A unmodified PNA
  • PEGylated polyethylene glycol
  • IP-PNA Short sequence (5-10) of IP-PNA units will be incorporated to 5-25 mer PNA sequence 3' and/or 5' position. The IP-PNA will be located at these positions to reduce the possibility that it affect the PNA-mRNA/DNA stability.
  • N,N- (2-Hydroxyethyl),2-aminoethylamine (Compound 3 of scheme 2 below), which comprises 2 amino groups (a primary and a secondary), and a tethered hydroxyl moiety.
  • the synthetic viewpoint of constructing the backbone (Compound 5 of scheme 2 below) is first to protect the distal amino group and successively to alkylate the internal amine with tert-butyl- bromoacetate.
  • BOC disclosed only low selectivity to the primary amine over the secondary and the reaction to protect the distal amino group of 4 (Compound 4 of scheme 2 below) gave a mixture of mono and di-BOC products.
  • the Fmoc protecting group was highly selective toward the primary amine, however it was cleaved under the Mitsunobu reaction conditions.
  • Two protecting groups proven to be of high selectivity to primary amines and ease to introduction are the monomethoxytrityl (MMT or MMt) and the phthalimido protecting groups (Pht).
  • MMT is cleaved with high yield within few minutes by low concentration of TFA while Phth group is cleaved by hydrazine (or hydrazine derivatives) or primary amines (as methyl amine or ethylene diamine) within a long period of time at low temperatures (24-48 hrs at r.t.) or within a shorter period of time at elevated temperatures (2-3 hrs at 60-70 °C).
  • hydrazine or hydrazine derivatives
  • primary amines as methyl amine or ethylene diamine
  • the intra-molecular transesterification was proved using 1H-NMR.
  • the characteristic chemical shifts of the ethyl ester (-OC ⁇ jb-CH ⁇ ) of the desire backbone disappeared and the chemical shifts of the methylene groups of HO-CEbCHs-N were shifted from 3.7 to 4.3 ppm. Due to this side reaction, the fert-butyl-bromoacetate was used for the alkylation of the secondary amine.
  • the desired backbone (5) was purified on silica gel column chromatography. The stability of the tert-butyl ester was followed by 1H-NMR for several days at R.T.
  • nucleobases can be attached to the designed backbone by three of the following methods: i) Replacing the linked hydroxyl group on the backbone structure by a bromide group, and subsequently alkylating the nucleobases at the appropriate positions, employing strong bases as NaH, K CO 3 or CsCO 3 in dry solvents mainly dry DMF, ii) to apply a similar procedure to the above but instead of using the alkyl bromide modification, to transform the hydroxyl group into a mesylate ester, and iii) alkylating the protected nucleobase with the 2-hydroxy ethyl group of compound (5) using Mitsunobu reaction conditions.
  • the adenine (A) was used with no protection of the N 6 exocyclic amine, since protection at this position decreases the regioselective alkylation of the N under Mitsunobu conditions.
  • the reaction mixture was warmed to 40°C.
  • N 6 of the adenine should be protected before the chain assembly since this exocyclic amine can interfere with the coupling reactions.
  • benzoyl group was used as to this aim.
  • thymine (T) in order to direct the alkylation to N 1 , N 3 should be protected.
  • Thymine (T) was converted to N 3 -Bz-T (8) by treatment of (T) with excess of benzoyl chloride in pyridine for 24h. This actually yielded the N",N 3 di-benzoylated product (7).
  • the N ' -benzoyl group was selectivelly cleaved using mild basic condictions by in situ adding water to the reaction vissel. Stirring the aquaeous solution for 8-10 hrs cleaved horrley all the N 1 -benzoyl group and gave rise to compound (8) (Scheme 3).
  • the desired mono protected N 3 -benzoyl thymine (8) was collected in high yield after washing the excess of benzoic acid with ether.
  • Guanine should also be protected on the amino group at the N 2 position. Although this position is not reactive and cannot interfere with the Mitsunobu reaction, its protection can improve the solubility of the nucleobase in organic solvents. Further more, the O 6 site of the guanine is a highly reactive under Mitsunobu conditions and thus, should be protected. Following this perception, the N 2 amino group was protected by acylation with acetic anhydride. This treatment led to the N 9 , N 2 -diacetylated guanine (product (9)).
  • N 2 should precede the carbamoylation step of O 6 , since the reaction of the latter on the unprotected guanine will virtually lead to the inadequate diphenyl urea protecting group analog (on N 2 ), which disclose a subtle cleavage property under the condition of concentrated ammonium hydroxide solution.
  • the product (9) was collected and subsequently the O 6 carbonyl was carbamoylated by diphenyl carbamoyl chloride.
  • the final product (10) was obtained after evaporation of the solvent and treatment of the residue with ethanol-water mixture (1:1) under reflux to hydrolyze the N 9 acetamido group.
  • the Fmoc derivative of the free acid was achieved by removal of the MMT and the t-butyl protecting groups of compounds 12A,12T,12G, and 12C by TFA in CHC1 3 or in DCM or by HBr/ACOH 10% followed by the treatment with 9-fluorenylmethylchloro formate (Fmoc-Cl) or 9-fluorenylmethyl succinimidyl carbonate (Fmoc-OSu).
  • the yellowish viscous product was purified on silica gel column chromatography.
  • the desired product was obtained as colorless viscous oil.
  • nucleobase attachment The three nucleobases (O 6 -DPC,N 2 -Ac-G, N3-Bz-T, A and N 4 -DPA-C) were attached to the backbone using Mitsunobu conditions. The nucleobases were dried in a dessicator under vacuum over P 2 O 5 and KOH.
  • Phthalimido group Another protecting group introduced to the terminal amino constituent of the monomer backbone was the Phthalimido group.
  • the general synthetic method is depicted in the following scheme.
  • the final product was attained via three step reaction.
  • the first step describe the attachment of the Phthalimido protecting group to the external amino group of aminoethylamino ethanol to get 14.
  • the second step involves the reaction of 14 with alkyl (R) bromoacetate to form Alkyl (R)- N,N -(2-hydroxyethyl),(2-Phthalimidoaminoethyl) glycinate (15).
  • the third step present the coupling of the protected nucleobases to 15 to yield compounds 16(ATCG).
  • the four nucleobases (O -DPC,N -Ac-G; N3-Bz-T; A; and
  • N 4 -DPA-C N 4 -DPA-C were attached to the backbone (15) via Mitsunobu reaction.
  • PNA oligomers Peptide nucleic acid analogs comprising positively charged PNA
  • Antisense oligodeoxynucleotides to NMDA-R1 receptor channel protect cortical neurons from excitotoxicity and reduce focal ischaemic infarctions. Nature, 1993, 363 (6426) 260-3.

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Abstract

La présente invention concerne de nouveaux types d'acides nucléiques peptidiques (PNA) dotés de propriétés améliorées. L'invention concerne, en particulier, des unités PNA chargées positivement comportant une liaison éthylène entre le squelette et la nucléobase, des analogues oligonucléotidiques comprenant lesdites unités, des oligomères comprenant lesdites unités, ainsi que l'utilisation de ces PNA chargés positivement comme nouveaux agents d'administration dans le cadre d'applications thérapeutiques et diagnostiques, notamment la thérapie antisens.
PCT/IL2001/000570 2000-06-23 2001-06-22 Analogues d'acides nucleiques peptidiques charges positivement a proprietes ameliorees WO2001098522A2 (fr)

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EP01945577A EP1292606A4 (fr) 2000-06-23 2001-06-22 Analogues d'acides nucleiques peptidiques charges positivement a proprietes ameliorees
US10/297,788 US7671036B2 (en) 2000-06-23 2001-06-22 Positively-charged peptide nucleic acid analogs with improved properties
CA002413556A CA2413556A1 (fr) 2000-06-23 2001-06-22 Analogues d'acides nucleiques peptidiques charges positivement a proprietes ameliorees
JP2002504670A JP2004520261A (ja) 2000-06-23 2001-06-22 改善された性質を有する正電荷を有するペプチド核酸類縁体
IL15352501A IL153525A0 (en) 2000-06-23 2001-06-22 Positively-charged peptide nucleic acid analogs with improved properties
AU67788/01A AU784561B2 (en) 2000-06-23 2001-06-22 Positively-charged peptide nucleic acid analogs with improved properties

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US8541384B2 (en) 2002-07-24 2013-09-24 The Trustees Of The University Of Pennsylvania Compositions and methods for siRNA inhibition of angiogenesis

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EP2226081A4 (fr) * 2007-10-25 2011-10-12 Univ Kagoshima Vaccin peptidique mettant en uvre une molécule mimétique de peptide beta - amyloïde
US11351815B2 (en) 2017-08-21 2022-06-07 The Hive Global, Inc. Bicycle cassette with clamping connection
KR102320650B1 (ko) * 2019-10-16 2021-11-04 주식회사 시선테라퓨틱스 혈뇌장벽 투과능을 가지는 펩티드 핵산 복합체 및 이를 포함하는 조성물
KR102574253B1 (ko) * 2020-12-15 2023-09-07 주식회사 시선테라퓨틱스 펩티드 핵산 복합체를 유효성분으로 함유하는 교모세포종 예방 또는 치료용 조성물

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6451968B1 (en) * 1991-05-24 2002-09-17 Isis Pharmaceuticals, Inc. Peptide nucleic acids
AU7559894A (en) * 1993-08-05 1995-02-28 Isis Pharmaceuticals, Inc. Oligomers for modulating metabolic function
DE4331012A1 (de) * 1993-09-13 1995-03-16 Bayer Ag Nukleinsäuren-bindende Oligomere mit N-Verzweigung für Therapie und Diagnostik
US6506594B1 (en) * 1999-03-19 2003-01-14 Cornell Res Foundation Inc Detection of nucleic acid sequence differences using the ligase detection reaction with addressable arrays
US6660845B1 (en) * 1999-11-23 2003-12-09 Epoch Biosciences, Inc. Non-aggregating, non-quenching oligomers comprising nucleotide analogues; methods of synthesis and use thereof

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
FALKIEWICZ B.: 'Peptide nucleic acids and their structural modifications' ACTA BIOCHIMICA POLONICA vol. 46, July 1999, pages 509 - 529, XP002908350 *
GANESH K.N.: 'Peptide nucleic acids: analogs and derivatives' CURRENT ORGANIC CHEMISTRY vol. 4, January 2000, pages 931 - 943, XP002908348 *
HYRUP B.: 'A flexible and positively charged PNA analogue with an ethylene-linker to the nucleobase: Synthesis and hybridization properties' BIOORCHANIC & MEDICINAL CHEMISTRY LETTERS vol. 6, no. 10, March 1996, pages 1083 - 1088, XP004134875 *
NIELSEN P.E.: 'Peptide nucleic acids: On the road to new gene therapeutic drugs' PHARMACOLOGY & TOXICOLOGY vol. 86, January 2000, pages 3 - 7, XP002908351 *
See also references of EP1292606A2 *
UHLMANN ET AL.: 'PNA: Synthetic polyamide nucleic acids with unusual binding properties' ANGEW. CHEM. INT. ED. vol. 37, November 1998, pages 2796 - 2823, XP002908349 *

Cited By (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2003087368A3 (fr) * 2002-04-18 2004-04-29 Lynkeus Bio Tech Gmbh Moyens et procedes pour la modulation specifique de genes cibles dans le snc et l'oeil, et procedes pour leur identification
US8202845B2 (en) 2002-04-18 2012-06-19 Acuity Pharmaceuticals, Inc. Means and methods for the specific modulation of target genes in the CNS and the eye and methods for their identification
US8541384B2 (en) 2002-07-24 2013-09-24 The Trustees Of The University Of Pennsylvania Compositions and methods for siRNA inhibition of angiogenesis
US8546345B2 (en) 2002-07-24 2013-10-01 The Trustees Of The University Of Pennsylvania Compositions and methods for siRNA inhibition of angiogenesis
US8946403B2 (en) 2002-07-24 2015-02-03 The Trustees Of The University Of Pennsylvania Compositions and methods for siRNA inhibition of angiogenesis
US9150863B2 (en) 2002-07-24 2015-10-06 The Trustees Of The University Of Pennsylvania Compositions and methods for siRNA inhibition of angiogenesis
US8470792B2 (en) 2008-12-04 2013-06-25 Opko Pharmaceuticals, Llc. Compositions and methods for selective inhibition of VEGF

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AU6778801A (en) 2002-01-02
IL153525A0 (en) 2003-07-06
EP1292606A4 (fr) 2004-03-24
US7671036B2 (en) 2010-03-02
AU784561B2 (en) 2006-05-04
EP1292606A2 (fr) 2003-03-19
JP2004520261A (ja) 2004-07-08
WO2001098522A3 (fr) 2002-08-08
CA2413556A1 (fr) 2001-12-27

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