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WO2001057245A3 - Hiv-1 resistance assay - Google Patents

Hiv-1 resistance assay Download PDF

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Publication number
WO2001057245A3
WO2001057245A3 PCT/BE2001/000017 BE0100017W WO0157245A3 WO 2001057245 A3 WO2001057245 A3 WO 2001057245A3 BE 0100017 W BE0100017 W BE 0100017W WO 0157245 A3 WO0157245 A3 WO 0157245A3
Authority
WO
WIPO (PCT)
Prior art keywords
hiv
genes
involves
resistance
env
Prior art date
Application number
PCT/BE2001/000017
Other languages
French (fr)
Other versions
WO2001057245A2 (en
Inventor
Myriam Witvrouw
Valery Fikkert
Christophe Pannecouque
Peter Cherepanov
Laethem Kristel Van
Clercq Erik De
Anne-Mieke Vandamme
Zeger Debyser
Original Assignee
Leuven K U Res & Dev
Myriam Witvrouw
Valery Fikkert
Christophe Pannecouque
Peter Cherepanov
Laethem Kristel Van
Clercq Erik De
Anne-Mieke Vandamme
Zeger Debyser
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from GB0002533A external-priority patent/GB0002533D0/en
Priority claimed from GB0101011A external-priority patent/GB0101011D0/en
Application filed by Leuven K U Res & Dev, Myriam Witvrouw, Valery Fikkert, Christophe Pannecouque, Peter Cherepanov, Laethem Kristel Van, Clercq Erik De, Anne-Mieke Vandamme, Zeger Debyser filed Critical Leuven K U Res & Dev
Priority to AU2001233513A priority Critical patent/AU2001233513A1/en
Publication of WO2001057245A2 publication Critical patent/WO2001057245A2/en
Publication of WO2001057245A3 publication Critical patent/WO2001057245A3/en

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C12Q1/702—Specific hybridization probes for retroviruses
    • C12Q1/703—Viruses associated with AIDS
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Virology (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Immunology (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • AIDS & HIV (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Present invention involves a recombination assay for the HIV envelope genes, gp120, gp41, and gp160. It further involves env-deleted proviral clones, the optimization of the PCR amplification of the corresponding env-genes and the subsequent sequencing of these genes. These techniques have been applied on several HIV-1(NL4.3) strains selected in vitro in the presence of increasing concentrations of inhibitors of HIV entry and evaluated for the phenotypic resistance of these recombined viruses. This phenotypic resistance has been correlated with genotypic resistance. Present invention also involves a recombination assay for the integrase gene.
PCT/BE2001/000017 2000-02-04 2001-02-05 Hiv-1 resistance assay WO2001057245A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2001233513A AU2001233513A1 (en) 2000-02-04 2001-02-05 Hiv-1 resistance assay

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
GB0002533A GB0002533D0 (en) 2000-02-04 2000-02-04 Recombination virus assays used for the elucidation of the molecular of action of antiviral drugs & the determination of reistance of clinical virus isolates
GB0002533.8 2000-02-04
GB0101011A GB0101011D0 (en) 2001-01-15 2001-01-15 Evaluation of HIV-1 resistance
GB0101011.5 2001-01-15

Publications (2)

Publication Number Publication Date
WO2001057245A2 WO2001057245A2 (en) 2001-08-09
WO2001057245A3 true WO2001057245A3 (en) 2002-06-27

Family

ID=26243566

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/BE2001/000017 WO2001057245A2 (en) 2000-02-04 2001-02-05 Hiv-1 resistance assay

Country Status (2)

Country Link
AU (1) AU2001233513A1 (en)
WO (1) WO2001057245A2 (en)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB0009374D0 (en) * 2000-04-14 2000-05-31 Glaxo Group Ltd Phenotyping assay and reagents therefor
ES2373488T3 (en) 2000-04-18 2012-02-06 Virco Bvba METHODS TO MEASURE DRUG RESISTANCE AGAINST HCV.
WO2002099383A2 (en) * 2001-06-04 2002-12-12 Virologic, Inc. Compositions and methods for evaluating viral receptor/co-receptor usage and inhibitors of virus entry using recombinant virus assays
US7306901B2 (en) 2001-08-08 2007-12-11 Tibotec Pharmaceuticals, Ltd. Methods and means for assessing HIV envelope inhibitor therapy
EP1285971B1 (en) * 2001-08-08 2007-10-10 Tibotec Pharmaceuticals Ltd. Methods for the phenotypic and genotypic assessment of the drug sensitivity of HIV integrase variants
US6958211B2 (en) 2001-08-08 2005-10-25 Tibotech Bvba Methods of assessing HIV integrase inhibitor therapy
ES2302860T3 (en) 2001-11-08 2008-08-01 Tibotec Pharmaceuticals Ltd. TEST OF PROTEASES FOR THE THERAPEUTIC MONITORING OF PHARMACOS.
CA2637307A1 (en) * 2006-02-03 2007-08-09 Virco Bvba Quantitative hiv phenotype or tropism assay

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993011230A1 (en) * 1991-12-02 1993-06-10 Dynal As Modified mammalian stem cell blocking viral replication
EP0591914A2 (en) * 1992-10-06 1994-04-13 BEHRINGWERKE Aktiengesellschaft Retrovirus of the HIV-group and its application
US5427930A (en) * 1990-01-26 1995-06-27 Abbott Laboratories Amplification of target nucleic acids using gap filling ligase chain reaction
US5599662A (en) * 1995-02-17 1997-02-04 Hoffmann-La Roche Inc. Oliconucleotide primers and probes for the detection of HIV-1
WO1997027480A1 (en) * 1996-01-26 1997-07-31 Virco N.V. Method of managing the chemotherapy of patients who are hiv positive based on the phenotypic drug sensitivity of human hiv strains
US5686272A (en) * 1992-05-29 1997-11-11 Abbott Laboratories Amplification of RNA sequences using the ligase chain reaction
WO1998051808A1 (en) * 1997-05-12 1998-11-19 Academisch Medisch Centrum Amsterdam Methods for producing retroviral vectors with an altered tropism

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5427930A (en) * 1990-01-26 1995-06-27 Abbott Laboratories Amplification of target nucleic acids using gap filling ligase chain reaction
WO1993011230A1 (en) * 1991-12-02 1993-06-10 Dynal As Modified mammalian stem cell blocking viral replication
US5686272A (en) * 1992-05-29 1997-11-11 Abbott Laboratories Amplification of RNA sequences using the ligase chain reaction
EP0591914A2 (en) * 1992-10-06 1994-04-13 BEHRINGWERKE Aktiengesellschaft Retrovirus of the HIV-group and its application
US5599662A (en) * 1995-02-17 1997-02-04 Hoffmann-La Roche Inc. Oliconucleotide primers and probes for the detection of HIV-1
WO1997027480A1 (en) * 1996-01-26 1997-07-31 Virco N.V. Method of managing the chemotherapy of patients who are hiv positive based on the phenotypic drug sensitivity of human hiv strains
WO1998051808A1 (en) * 1997-05-12 1998-11-19 Academisch Medisch Centrum Amsterdam Methods for producing retroviral vectors with an altered tropism

Non-Patent Citations (11)

* Cited by examiner, † Cited by third party
Title
ADACHI A ET AL: "PRODUCTION OF ACQUIRED IMMUNODEFICIENCY SYNDROME-ASSOCIATED RETROVIRUS IN HUMAN AND NONHUMAN CELLS TRANSFECTED WITH AN INFECTIOUS MOLECULAR CLONE", JOURNAL OF VIROLOGY, NEW YORK, US, US, vol. 59, no. 2, August 1986 (1986-08-01), pages 284 - 291, XP000870136, ISSN: 0022-538X *
CHO MICHAEL W ET AL: "Identification of determinants on a dualtropic human immunodeficiency virus type 1 envelope glycoprotein that confer usage of CXCR4.", JOURNAL OF VIROLOGY, vol. 72, no. 3, March 1998 (1998-03-01), pages 2509 - 2515, XP002186429, ISSN: 0022-538X *
DATABASE BIOSIS [online] BIOSCIENCES INFORMATION SERVICE, PHILADELPHIA, PA, US; 25 November 1999 (1999-11-25), HUNG CHIA-SUEI ET AL: "Relationship between productive HIV-1 infection of macrophages and CCR5 utilization.", XP002186266, Database accession no. PREV200000104601 *
DATABASE BIOSIS [online] BIOSCIENCES INFORMATION SERVICE, PHILADELPHIA, PA, US; September 2000 (2000-09-01), PLUYMERS WIM ET AL: "Viral entry as the primary target for the anti-HIV activity of chicoric acid and its tetra-acetyl esters.", XP002186430, Database accession no. PREV200000461434 *
DATABASE MEDLINE [online] US NATIONAL LIBRARY OF MEDICINE (NLM), BETHESDA, MD, US; ESTE J A ET AL: "Human immunodeficiency virus glycoprotein gp120 as the primary target for the antiviral action of AR177 (Zintevir).", XP002186265, retrieved from STN Database accession no. 1998130706 *
HERTOGS ET AL: "A Rapid Method for Simultaneous Detection of Phenotypic Resistance to Inhibitors of Protease and Reverse Transcriptase in Recombinant Human Immunodeficiency Virus Type 1 Isolates from Patients Treated with Antiretroviral Drugs", ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON, DC, US, vol. 42, no. 2, February 1998 (1998-02-01), pages 269 - 276, XP002137814, ISSN: 0066-4804 *
MARTINEZ-PICADO J ET AL: "HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CLONING VECTORS FOR ANTIRETROVIRAL RESISTANCE TESTING", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 37, no. 9, September 1999 (1999-09-01), pages 2943 - 2951, XP002933597, ISSN: 0095-1137 *
MOLECULAR PHARMACOLOGY, (1998 FEB) 53 (2) 340-5. *
MOLECULAR PHARMACOLOGY, vol. 58, no. 3, September 2000 (2000-09-01), pages 641 - 648, ISSN: 0026-895X *
PANNECOUQUE C. ET AL.: "Viral entry as the primary target of anti-HIV activity of chicoric acid and its ttra-acetyl esters", ANTIVIRAL RESEARCH, vol. 46, no. 1, April 2000 (2000-04-01), pages A36, XP001038484 *
VIROLOGY, vol. 264, no. 2, 25 November 1999 (1999-11-25), pages 278 - 288, ISSN: 0042-6822 *

Also Published As

Publication number Publication date
AU2001233513A1 (en) 2001-08-14
WO2001057245A2 (en) 2001-08-09

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