WO2000077523A1 - Biocapteurs utilisant des polymeres conjugues a charge neutre - Google Patents
Biocapteurs utilisant des polymeres conjugues a charge neutre Download PDFInfo
- Publication number
- WO2000077523A1 WO2000077523A1 PCT/US2000/015832 US0015832W WO0077523A1 WO 2000077523 A1 WO2000077523 A1 WO 2000077523A1 US 0015832 W US0015832 W US 0015832W WO 0077523 A1 WO0077523 A1 WO 0077523A1
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- WIPO (PCT)
- Prior art keywords
- conjugated polymer
- biomolecule
- neutral conjugated
- charge neutral
- electrodes
- Prior art date
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- 230000007935 neutral effect Effects 0.000 title claims abstract description 37
- 229920000547 conjugated polymer Polymers 0.000 title claims abstract description 32
- 239000000523 sample Substances 0.000 claims abstract description 46
- 229920001577 copolymer Polymers 0.000 claims abstract description 30
- 229920000642 polymer Polymers 0.000 claims abstract description 18
- 125000000524 functional group Chemical group 0.000 claims abstract description 15
- 229920000128 polypyrrole Polymers 0.000 claims description 37
- KAESVJOAVNADME-UHFFFAOYSA-N Pyrrole Chemical compound C=1C=CNC=1 KAESVJOAVNADME-UHFFFAOYSA-N 0.000 claims description 22
- 238000001514 detection method Methods 0.000 claims description 22
- 238000000034 method Methods 0.000 claims description 20
- 108091034117 Oligonucleotide Proteins 0.000 claims description 17
- BASFCYQUMIYNBI-UHFFFAOYSA-N platinum Chemical compound [Pt] BASFCYQUMIYNBI-UHFFFAOYSA-N 0.000 claims description 13
- 239000011159 matrix material Substances 0.000 claims description 11
- 239000012491 analyte Substances 0.000 claims description 10
- 238000004891 communication Methods 0.000 claims description 6
- 229910052697 platinum Inorganic materials 0.000 claims description 6
- 238000012360 testing method Methods 0.000 claims description 6
- 230000000295 complement effect Effects 0.000 claims description 5
- 238000005259 measurement Methods 0.000 claims description 5
- -1 polyphenylene Polymers 0.000 claims description 5
- OAKJQQAXSVQMHS-UHFFFAOYSA-N Hydrazine Chemical compound NN OAKJQQAXSVQMHS-UHFFFAOYSA-N 0.000 claims description 4
- XUIMIQQOPSSXEZ-UHFFFAOYSA-N Silicon Chemical compound [Si] XUIMIQQOPSSXEZ-UHFFFAOYSA-N 0.000 claims description 4
- XLOMVQKBTHCTTD-UHFFFAOYSA-N Zinc monoxide Chemical compound [Zn]=O XLOMVQKBTHCTTD-UHFFFAOYSA-N 0.000 claims description 4
- 238000002484 cyclic voltammetry Methods 0.000 claims description 4
- 229910052710 silicon Inorganic materials 0.000 claims description 4
- 239000010703 silicon Substances 0.000 claims description 4
- 238000004832 voltammetry Methods 0.000 claims description 4
- 238000000151 deposition Methods 0.000 claims description 3
- PCHJSUWPFVWCPO-UHFFFAOYSA-N gold Chemical compound [Au] PCHJSUWPFVWCPO-UHFFFAOYSA-N 0.000 claims description 3
- 229910052737 gold Inorganic materials 0.000 claims description 3
- 239000010931 gold Substances 0.000 claims description 3
- NIXOWILDQLNWCW-UHFFFAOYSA-N Acrylic acid Chemical compound OC(=O)C=C NIXOWILDQLNWCW-UHFFFAOYSA-N 0.000 claims description 2
- UJOBWOGCFQCDNV-UHFFFAOYSA-N Carbazole Natural products C1=CC=C2C3=CC=CC=C3NC2=C1 UJOBWOGCFQCDNV-UHFFFAOYSA-N 0.000 claims description 2
- RYGMFSIKBFXOCR-UHFFFAOYSA-N Copper Chemical compound [Cu] RYGMFSIKBFXOCR-UHFFFAOYSA-N 0.000 claims description 2
- 239000004593 Epoxy Substances 0.000 claims description 2
- 229910019142 PO4 Inorganic materials 0.000 claims description 2
- 229920000265 Polyparaphenylene Polymers 0.000 claims description 2
- BQCADISMDOOEFD-UHFFFAOYSA-N Silver Chemical compound [Ag] BQCADISMDOOEFD-UHFFFAOYSA-N 0.000 claims description 2
- 229910045601 alloy Inorganic materials 0.000 claims description 2
- 239000000956 alloy Substances 0.000 claims description 2
- HSFWRNGVRCDJHI-UHFFFAOYSA-N alpha-acetylene Natural products C#C HSFWRNGVRCDJHI-UHFFFAOYSA-N 0.000 claims description 2
- 150000001408 amides Chemical class 0.000 claims description 2
- 150000001412 amines Chemical class 0.000 claims description 2
- 239000006229 carbon black Substances 0.000 claims description 2
- 150000007942 carboxylates Chemical class 0.000 claims description 2
- 229910052802 copper Inorganic materials 0.000 claims description 2
- 239000010949 copper Substances 0.000 claims description 2
- 150000002148 esters Chemical class 0.000 claims description 2
- 150000004820 halides Chemical class 0.000 claims description 2
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims description 2
- 229910003437 indium oxide Inorganic materials 0.000 claims description 2
- PJXISJQVUVHSOJ-UHFFFAOYSA-N indium(iii) oxide Chemical compound [O-2].[O-2].[O-2].[In+3].[In+3] PJXISJQVUVHSOJ-UHFFFAOYSA-N 0.000 claims description 2
- AMGQUBHHOARCQH-UHFFFAOYSA-N indium;oxotin Chemical compound [In].[Sn]=O AMGQUBHHOARCQH-UHFFFAOYSA-N 0.000 claims description 2
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 claims description 2
- 239000010452 phosphate Substances 0.000 claims description 2
- 229920000553 poly(phenylenevinylene) Polymers 0.000 claims description 2
- 229920001197 polyacetylene Polymers 0.000 claims description 2
- 229920000767 polyaniline Polymers 0.000 claims description 2
- 229920001088 polycarbazole Polymers 0.000 claims description 2
- 229920000015 polydiacetylene Polymers 0.000 claims description 2
- 238000006116 polymerization reaction Methods 0.000 claims description 2
- 230000000379 polymerizing effect Effects 0.000 claims description 2
- 229920000123 polythiophene Polymers 0.000 claims description 2
- 238000000083 pulse voltammetry Methods 0.000 claims description 2
- 229910052709 silver Inorganic materials 0.000 claims description 2
- 239000004332 silver Substances 0.000 claims description 2
- 238000004365 square wave voltammetry Methods 0.000 claims description 2
- 150000003573 thiols Chemical class 0.000 claims description 2
- 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 claims description 2
- 229920002554 vinyl polymer Polymers 0.000 claims description 2
- 239000011787 zinc oxide Substances 0.000 claims description 2
- 125000000962 organic group Chemical group 0.000 claims 1
- 108020004414 DNA Proteins 0.000 description 30
- 238000009396 hybridization Methods 0.000 description 10
- 239000000178 monomer Substances 0.000 description 9
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 8
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 8
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 6
- 238000003491 array Methods 0.000 description 6
- 125000003118 aryl group Chemical group 0.000 description 6
- 229920001940 conductive polymer Polymers 0.000 description 6
- 102000053602 DNA Human genes 0.000 description 5
- 229910021607 Silver chloride Inorganic materials 0.000 description 5
- 108020004682 Single-Stranded DNA Proteins 0.000 description 5
- 238000010791 quenching Methods 0.000 description 5
- HKZLPVFGJNLROG-UHFFFAOYSA-M silver monochloride Chemical compound [Cl-].[Ag+] HKZLPVFGJNLROG-UHFFFAOYSA-M 0.000 description 5
- 239000013256 coordination polymer Substances 0.000 description 4
- 239000003792 electrolyte Substances 0.000 description 4
- 108090000765 processed proteins & peptides Proteins 0.000 description 4
- 102000004196 processed proteins & peptides Human genes 0.000 description 4
- 238000005406 washing Methods 0.000 description 4
- 125000003277 amino group Chemical group 0.000 description 3
- 239000000872 buffer Substances 0.000 description 3
- 239000008367 deionised water Substances 0.000 description 3
- 229910021641 deionized water Inorganic materials 0.000 description 3
- 238000002848 electrochemical method Methods 0.000 description 3
- 238000004070 electrodeposition Methods 0.000 description 3
- 238000002474 experimental method Methods 0.000 description 3
- 239000007850 fluorescent dye Substances 0.000 description 3
- 238000002372 labelling Methods 0.000 description 3
- 239000003550 marker Substances 0.000 description 3
- 229910052751 metal Inorganic materials 0.000 description 3
- 239000002184 metal Substances 0.000 description 3
- 229920001184 polypeptide Polymers 0.000 description 3
- 230000000171 quenching effect Effects 0.000 description 3
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 2
- 238000004458 analytical method Methods 0.000 description 2
- 238000010586 diagram Methods 0.000 description 2
- 238000001917 fluorescence detection Methods 0.000 description 2
- UYTPUPDQBNUYGX-UHFFFAOYSA-N guanine Chemical compound O=C1NC(N)=NC2=C1N=CN2 UYTPUPDQBNUYGX-UHFFFAOYSA-N 0.000 description 2
- 238000002847 impedance measurement Methods 0.000 description 2
- 150000002739 metals Chemical class 0.000 description 2
- 239000000203 mixture Substances 0.000 description 2
- 239000008363 phosphate buffer Substances 0.000 description 2
- 230000002285 radioactive effect Effects 0.000 description 2
- 239000000126 substance Substances 0.000 description 2
- 238000006467 substitution reaction Methods 0.000 description 2
- OSBLTNPMIGYQGY-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;2-[2-[bis(carboxymethyl)amino]ethyl-(carboxymethyl)amino]acetic acid;boric acid Chemical compound OB(O)O.OCC(N)(CO)CO.OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O OSBLTNPMIGYQGY-UHFFFAOYSA-N 0.000 description 1
- JCLFHZLOKITRCE-UHFFFAOYSA-N 4-pentoxyphenol Chemical compound CCCCCOC1=CC=C(O)C=C1 JCLFHZLOKITRCE-UHFFFAOYSA-N 0.000 description 1
- GFFGJBXGBJISGV-UHFFFAOYSA-N Adenine Chemical compound NC1=NC=NC2=C1N=CN2 GFFGJBXGBJISGV-UHFFFAOYSA-N 0.000 description 1
- 229930024421 Adenine Natural products 0.000 description 1
- PNEYBMLMFCGWSK-UHFFFAOYSA-N Alumina Chemical compound [O-2].[O-2].[O-2].[Al+3].[Al+3] PNEYBMLMFCGWSK-UHFFFAOYSA-N 0.000 description 1
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 1
- 108091028043 Nucleic acid sequence Proteins 0.000 description 1
- 108020005187 Oligonucleotide Probes Proteins 0.000 description 1
- 239000008051 TBE buffer Substances 0.000 description 1
- 229960000643 adenine Drugs 0.000 description 1
- 239000000427 antigen Substances 0.000 description 1
- 102000036639 antigens Human genes 0.000 description 1
- 108091007433 antigens Proteins 0.000 description 1
- 238000003556 assay Methods 0.000 description 1
- 238000000376 autoradiography Methods 0.000 description 1
- 150000001768 cations Chemical class 0.000 description 1
- 238000006243 chemical reaction Methods 0.000 description 1
- 239000004020 conductor Substances 0.000 description 1
- 238000007334 copolymerization reaction Methods 0.000 description 1
- 230000007423 decrease Effects 0.000 description 1
- 230000008021 deposition Effects 0.000 description 1
- 229910001873 dinitrogen Inorganic materials 0.000 description 1
- 238000010291 electrical method Methods 0.000 description 1
- 238000006056 electrooxidation reaction Methods 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 230000002708 enhancing effect Effects 0.000 description 1
- 238000009472 formulation Methods 0.000 description 1
- 239000005556 hormone Substances 0.000 description 1
- 229940088597 hormone Drugs 0.000 description 1
- 239000012212 insulator Substances 0.000 description 1
- 150000002500 ions Chemical class 0.000 description 1
- 125000005647 linker group Chemical group 0.000 description 1
- MHCFAGZWMAWTNR-UHFFFAOYSA-M lithium perchlorate Chemical compound [Li+].[O-]Cl(=O)(=O)=O MHCFAGZWMAWTNR-UHFFFAOYSA-M 0.000 description 1
- 229910001486 lithium perchlorate Inorganic materials 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 229910044991 metal oxide Inorganic materials 0.000 description 1
- 150000004706 metal oxides Chemical class 0.000 description 1
- 238000006386 neutralization reaction Methods 0.000 description 1
- 230000003472 neutralizing effect Effects 0.000 description 1
- 238000001668 nucleic acid synthesis Methods 0.000 description 1
- 239000002773 nucleotide Substances 0.000 description 1
- 125000003729 nucleotide group Chemical group 0.000 description 1
- 238000002966 oligonucleotide array Methods 0.000 description 1
- 239000002751 oligonucleotide probe Substances 0.000 description 1
- 230000003287 optical effect Effects 0.000 description 1
- 150000002894 organic compounds Chemical class 0.000 description 1
- 230000000737 periodic effect Effects 0.000 description 1
- 238000005498 polishing Methods 0.000 description 1
- 229920000414 polyfuran Polymers 0.000 description 1
- 239000000843 powder Substances 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 150000003233 pyrroles Chemical class 0.000 description 1
- 238000000163 radioactive labelling Methods 0.000 description 1
- 238000012216 screening Methods 0.000 description 1
- 239000004065 semiconductor Substances 0.000 description 1
- 230000035945 sensitivity Effects 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 239000003115 supporting electrolyte Substances 0.000 description 1
- 238000010408 sweeping Methods 0.000 description 1
Classifications
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/543—Immunoassay; Biospecific binding assay; Materials therefor with an insoluble carrier for immobilising immunochemicals
- G01N33/54366—Apparatus specially adapted for solid-phase testing
- G01N33/54373—Apparatus specially adapted for solid-phase testing involving physiochemical end-point determination, e.g. wave-guides, FETS, gratings
- G01N33/5438—Electrodes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6825—Nucleic acid detection involving sensors
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
- B01J2219/00612—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports the surface being inorganic
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
- B01J2219/00614—Delimitation of the attachment areas
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
- B01J2219/00623—Immobilisation or binding
- B01J2219/00626—Covalent
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
- B01J2219/00632—Introduction of reactive groups to the surface
- B01J2219/00637—Introduction of reactive groups to the surface by coating it with another layer
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00653—Making arrays on substantially continuous surfaces the compounds being bound to electrodes embedded in or on the solid supports
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00659—Two-dimensional arrays
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00709—Type of synthesis
- B01J2219/00713—Electrochemical synthesis
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00718—Type of compounds synthesised
- B01J2219/0072—Organic compounds
Definitions
- the invention is in the field of arrays of sensing electrodes on a chip for conducting analysis of biological substances such as DNA.
- a device for biomolecule detection is generally comprised of supporting matrix for probe molecule attachment or entrapment, a sensing probe located on/in the supporting matrix.
- a complementary biomolecule target or analyte
- the biosensing device When exposed to a complementary biomolecule target (or analyte), the biosensing device produces detectable change in radioactive, optical, or electrical signal to confirm the existence of a specific biomolecule target.
- the biomolecule target to be detected needs to be labeled with a marker (or reporter) such as 32 P, fluorescent dye, or redox, depending on whether the detection means is autoradiography, fluorescent microscope or electric tools.
- An alternative biosensing device includes a second reporting molecule.
- the second reporting molecule is introduced after the probe molecule has interacted with its complementary biomolecule target. Like the probe molecule, the second reporting molecule also interacts with the biomolecule target by either binding to the target or forming a complex.
- Lavache, et al Analytical Biochemistry 258, 188-194 describes an oligonucleotide array constructed on a silicon chip having a matrix of addressable microelectrodes. Each electrode is coated with polypyrrole copolymer where some of the pyrroles in the copolymer have an oligonucleotide bound to the pyrrole.
- the polymers are made by electrochemical techniques. This copolymer is deposited on microelectrodes. Hepatistis C genotypes were detected by hybridization of the probe DNA on the electrode to test sample DNA which was PCR amplified to contain a fluorescent marker group.
- WO 95/29199 describes functionalized polypyrrole copolymers where the functional groups are designed to bind biological molecules such as DNA or polypeptides.
- US Patent 5,837,859 assigned to Cis Bio International describes the preparation of electrically conductive pyrrole/nucleotide/derivatized/pyrrole copolymers useful for nucleic acid synthesis, sequencing and hybridization. The copolymers are produced electrochemically and coated on microelectrodes for DNA analysis.
- US Patent 5,202,261 describes conductive sensors and their use in diagnostic assays.
- US Patent 5,403,451 describes the detecting of a target analyte with conductive polymer coupled with periodic alternating voltage.
- the target DNA is usually labeled with a marker (or reporter) such as 32 P, fluorescent dye, or redox.
- a marker such as 32 P, fluorescent dye, or redox.
- a radioactive signal or fluorescence, or electric signal is detected.
- fluorescent or redox labeling is preferred due to the stringent experiment conditions required for radioactive labeling.
- fluorescent dyes in the vicinity of conductive polymers or copolymers are subject to signal quenching.
- conductive polymers or copolymers contribute to significant background noise when used for redox labeled target detection.
- the invention is directed to a method of detecting biological molecule
- biomolecule such as DNA, RNA and polypeptides with the aid of a neutralized conjugated polymer or copolymer on electrodes.
- the present invention makes use of a functionalized polymer or copolymer in its neutral state, instead of conductive state as the supporting matrix for biomolecule probe attachment or entrapment in a biomolecule detection device.
- aromatic monomers and functionalized aromatic monomers are electrochemically polymerized and deposited on an electrode surface to generate a functionalized polymer or copolymer.
- the as-deposited conjugated polymer or copolymer is in a charged, conductive state.
- the charged, functionalized polymer or copolymer is electrochemically reduced to a neutral state to form (charge neutral conjugated polymer) before it is used in any biomolecule detection.
- the charge neutral functionalized polymer or copolymer has low electric background when used in electric detection of biomolecules. It also does not quench fluorescent signal when used in fluorescent detection of biomolecules. In both cases, the resulting devices have significantly improved signal to noise ratio, thus enhancing the sensitivity of biomolecule detection.
- the invention includes a charge neutral conjugated polymer which have functional groups for binding biomolecule probes to the polmyer.
- the invention includes electrodes in electrical communication with such polmyers, arrays of such electrodes.
- the invention includes biosensors which a biomolecule probe is covalently linked to the functional group of the charge neutral conjugated polymer on electrode and a binding of a biomolecule to be detected is measured by an electrical detection means, such as AC impedence.
- Figure 1 represents a schematic diagram for preparing the array of polypyrrole coated electrodes and detecting by AC impedance.
- Figure 2 illustrates polypyrrole copolymer formulation
- FIG. 3 illustrates the electrochemically reduced neutral polypyrrole copolymer.
- Figure 4 illustrates the relationship of capacitance vs. frequency on oxidized polypyrrole-based electrodes with and without DNA Attachment.
- Figure 5 illustrates the relationship of capacitance vs. frequency on neutral polypyrrole-based electrode with and without DNA attachment.
- Figure 6 illustrates the comparison of response of capacitance vs. frequency between oxidized and neutralized polypyrrole-based electrodes with DNA attachment.
- Figure 7 AC impedance planes measured in perfect match hybridized DNA and single stranded DNA system.
- Figure 8 is a Frequency Complex diagram obtained from neutralized polypyrrole Electrodes.
- Figure 9 is impedance planes measured in 3-bas mismatch hybridized DNA and single stranded DNA systems.
- Figure 10 is a plot of Resistance vs. ⁇ "1 ' 2 for AC impedance measured in 3- base mismatch hybridized DNA and single stranded DNA systems.
- the invention is directed to a method of detecting biological molecule with the aid of a charge neutral conjugated polymer on electrodes.
- Charge neutral conjugated polymer is meant a polymer with zero charge (negative or positive) on its backbone, yet with delocalized pi electron on its backbone.
- a conjugated polymer is characterized by its backbone with regular alternation of single and double chemical bonds. Examples of conjugated polymers include: polypyrrole, polyphenylene, polyacetylene, polydiacetylene, polythiophene, polyfuran, polyaniline, polycarbazole, poly(phenylene vinyl ene). More specifically, the invention encompasses a charge neutral conjugated polymers containing one or more functional groups capable of binding a probe molecule.
- the as-deposited conjugated polymer or copolymer is conductive and is usually in its charged state with its charge being balanced by counter ions from the polymerization solution.
- the charged state is the source of signal quenching for nearby fluorescent markers as in the case of fluorescence detection. It is also the source of noise for electric detection.
- the polymer or copolymer deposited on the electrode used in present invention is reduced to its charge-neutral state from the as-deposited charged state by reverse biasing right after the polymer or copolymer is initially deposited on the surface electrodes.
- the polymer or copolymer in its neutral state is an insulator or semiconductor, which does not quench fluorescence of nearby fluorescent markers in fluorescence detection and also give rise to only limited background noise in electric detection of biomolecule target.
- the functional group used in present invention includes, but not limited to, amine, hydrazine, ester, amide, carboxylate, halide, hydroxyl, vinyl, vinyl carboxylate, thiol, phosphate, silicon containing organic compounds, and their derivatives.
- the functional group is used to bind biomolecule probes such as DNA, RNA, peptides, polypeptides, proteins, antibody, antigen and hormones to the polymer or copolymer on the electrode.
- biomolecule probes such as DNA, RNA, peptides, polypeptides, proteins, antibody, antigen and hormones
- an oligonucleotide which is in part complementary to a target DNA is covalently linked to a neutral polypyrrol copolymer through an amine functional group.
- the electrode used in the present invention is made of at least one of the following materials: metals such as gold, silver, platinum, copper, and alloys; conductive metal oxide such as indium oxide, indium-tin oxide, zinc oxide; other conductive materials such carbon black, conductive epoxy and combinations thereof.
- the preferred sensing method in this embodiment is electric or electrochemical methods. After exposure to a target molecule, the biosensor senses a change in electric signal, and reports the change by a readout means such as display, printout.
- the electric or/and electrochemical methods may be selected from, but are not limited to, AC impedance, cyclic voltammetry (CV), pulse voltammetry, square wave voltammetry, AC voltammetry (ACV), hydrodynamic modulation voltammetry, potential step method, potentiometric measurements, amperometric measurements, current step method, and combinations thereof. It is more advantageous to detect a biomolecule target without the need of labeling the target.
- Present invention provides a highly sensitive method for detection of biomolecule target without the need of labeling the target.
- biomolecules are electrically active and may produce undesired background noise when a detection is performed by passing charge through those biomolecules.
- guanine and adenine can be oxidized around 0.75 V and
- the invention includes a method for determining an analyte in a test sample comprising: (a) depositing a polymer or copolymer film on an electrode by electrochemically polymerizing an aromatic monomer and a monomer with functional group in a solution via a positive bias with supporting electrolyte;
- the biosensor may include an array of electrodes in electrical contact with a matrix of charge neutral conjugated polymer having different sensing probes for sensing multiple biomolecule targets. It is also within the scope of the present invention to fabricate a high density biosensor with column and row addressable electrodes coated with thousands of sensing probes for screening applications. In the case of a high density array, it is more practical to place various biomolecule probes on each electrode with a robotic tool.
- the invention is illustrated by neutral polypyrrole conjugated polymer electrode arrays used in conjunction with AC impedance detecting methods.
- the process to make such arrays is schematically shown in Fig. 1.
- the chips J_0 are made by microelectric technology on a silicon support j_l.
- the probe arrays 05 and electrodes J_6 are made of inert metals such as gold or platinum.
- Polypyrrole J_2, with DNA linking group J_3 is electrochemically deposited on the probe array J_4 in 0.1 M pyrrole + 5 ⁇ M 3-acetate N-hydroxysuaccinimido pyrrole + 0.1 M LiCIO /acetonitrile (0/5% water). Then the polypyrrole-film is electrochemically neutralized 17.
- every probe can be sequentially attached to a different oligonucleotide 18 ODNl and ODN2.
- AC impedance analyzer 20 is used to detect the impedance change for a specific DNA sequence 2L
- the biomolecule probe can also be attached to the aromatic functional monomer before it is electrochemically polymerized with aromatic monomer to yield a conjugated polymer.
- Electrode surface was polished by gamma alumina powder (CH Instruments, Inc.) with 0.3 and 0.005 ⁇ m in sequence followed by deionized water washing. After polishing, the electrodes were immersed in 1 M HsSO for 20 minutes and then vigorously washed by DI water. CH 660 potentiostat was used for polypyrrole deposition. Platinum wire and
- the electrolyte was purged by nitrogen gas during whole electrochemical deposition.
- the deposited polypyrrole film with the linking function group was uniform and blue in color.
- the polypyrrole film is in oxidized form (charged conductive state).
- the electrode was placed in the electrolyte again and cycled over a potential range of -0.2 to 0.3 vs Ag/AgCl, which is the reduction zone for this electrochemical system.
- the neutralization of the polypyrrole film is illustrated in Figure 3.
- the neutralized polypyrrole film coated electrodes were vigorously washed for probe oligonucleotide attachment.
- the oligonucleotide CCC TCA AGC AGA with a terminal amino group on it s 5'-phosphorylated position was used.
- the oxidized polypyrrole film was modified by oligonucleotide in the same procedure mentioned above.
- Fig. 4 shows the capacitance changes of the electrode surface vs. frequency, indicating that the oxidized polypyrrole-based electrode surface with oligonucleotide attachment has larger capacitance response than the surface without oligonucleotide attachment at the low frequency range. However, the ratio of signal to noise is not great.
- Fig. 5 demonstrates that the capacitance of neutralized polypyrrole-based electrode surface with oligonucleotide attachment is significantly greater than that of the surface without oligonucleotide attachment.
- Fig. 6 shows that the capacitance on the neutralized polypyrrol-based electrode surface with oligonucleotide attachment is greater than that of oxidized polypyrrole-based surface by about 4 times.
- the neutralized polypyrrole film coated electrodes were vigorously washed for
- the oligonucleotide CCC TCA AGC AGA with a terminal amino group on its 5'- phosphorylated position was used as an example.
- the microelectrode was washed with DI water thoroughly before a baseline AC impedance was measured.
- the probe attached to polypyrrole on a microelectrode was exposed to 35 uL of target molecule of different concentration
- the counter and reference electrodes were platinum and Ag/AgCl, respectively.
- OCV open circuit voltage
- the measured complex impedance versus frequency is shown in Fig. 8 for single and hybridized DNA, indicating significant difference of the impedance before and after hybridization.
- this type of electrodes can detect 0.1 amol of target DNA in solution due to the neutralized form of polyrrole film.
- This invention can be used in any solution containing metal or polymerized cations, which are ion-conductive and can react with DNA.
- the above examples are intended to illustrate the present invention and not to limit it in spirit or scope.
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- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
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Abstract
Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
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AU54757/00A AU776997B2 (en) | 1999-06-10 | 2000-06-09 | Biosensors which utilize charge neutral conjugated polymers |
CA002376532A CA2376532A1 (fr) | 1999-06-10 | 2000-06-09 | Biocapteurs utilisant des polymeres conjugues a charge neutre |
EP00939709A EP1190253A1 (fr) | 1999-06-10 | 2000-06-09 | Biocapteurs utilisant des polymeres conjugues a charge neutre |
JP2001503529A JP2003508730A (ja) | 1999-06-10 | 2000-06-09 | 電荷中性共役ポリマーを用いるバイオセンサー |
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US13843799P | 1999-06-10 | 1999-06-10 | |
US60/138,437 | 1999-06-10 |
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PCT/US2000/015832 WO2000077523A1 (fr) | 1999-06-10 | 2000-06-09 | Biocapteurs utilisant des polymeres conjugues a charge neutre |
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EP (1) | EP1190253A1 (fr) |
JP (1) | JP2003508730A (fr) |
AU (1) | AU776997B2 (fr) |
CA (1) | CA2376532A1 (fr) |
WO (1) | WO2000077523A1 (fr) |
Cited By (18)
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WO2001013115A3 (fr) * | 1999-08-16 | 2001-08-23 | Wolf Bertling | Procede et dispositif d'identification d'une sequence de biopolymere sur des surfaces de corps solides |
EP1138048A1 (fr) * | 1998-11-19 | 2001-10-04 | Bio Merieux | Polymeres conjugues fonctionnalises capables d'electroconductivite et d'electroactivite, et utilisations de ces polymeres |
WO2001086298A1 (fr) * | 2000-05-10 | 2001-11-15 | Asulab S.A. | Procede d"immobilisation de constituants de reconnaissance |
WO2001061053A3 (fr) * | 2000-02-17 | 2002-03-14 | Motorola Inc | Capteurs de proteines et peptides mettant en oeuvre des procedes de detection |
EP1376128A1 (fr) * | 2002-06-25 | 2004-01-02 | Bayer Aktiengesellschaft | Procédé et appareil de détection impedimetrique d'un ou de plusieurs analytes dans un échantillon |
WO2004037405A1 (fr) * | 2002-10-28 | 2004-05-06 | Apibio Sas | Biopuce et procede de traitement d'une pluralite de biopuces |
WO2004044570A1 (fr) * | 2002-11-14 | 2004-05-27 | Toyama Prefecture | Procede de detection d'hybridation |
FR2849038A1 (fr) * | 2002-12-19 | 2004-06-25 | Apibio | Nouveaux pyrroles substitues avec des oligonucleotides, polymeres electroactifs et leurs utilisations |
DE10311315A1 (de) * | 2003-03-14 | 2004-09-30 | Apibio Sas | Verfahren und Vorrichtung zur Detektion von Biomolekülen |
US7063978B2 (en) | 2001-11-01 | 2006-06-20 | 3M Innovative Properties Company | Coated film laminate having an electrically conductive surface |
JP2006517186A (ja) * | 2002-09-04 | 2006-07-20 | ボード オブ リージェンツ ユニバーシティ オブ テキサス システム | 二機能性の生体材料の組成物、方法、および使用 |
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WO2012004540A1 (fr) | 2010-07-08 | 2012-01-12 | bioMérieux | Procede de detection et d'identification directe d'un microorganisme dans un echantillon biologique dilue dans un bouillon d'enrichissement |
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KR100663713B1 (ko) * | 2005-12-16 | 2007-01-03 | 성균관대학교산학협력단 | 신규한 폴리디아세틸렌 초분자체 색 전이 센서 |
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AU2013212574C1 (en) * | 2012-01-27 | 2017-03-30 | University Of Tennessee Research Foundation | Method and apparatus for detection of a biomarker by alternating current electrokinetics |
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- 2000-06-09 AU AU54757/00A patent/AU776997B2/en not_active Ceased
- 2000-06-09 WO PCT/US2000/015832 patent/WO2000077523A1/fr active IP Right Grant
- 2000-06-09 EP EP00939709A patent/EP1190253A1/fr not_active Withdrawn
- 2000-06-09 CA CA002376532A patent/CA2376532A1/fr not_active Abandoned
- 2000-06-09 JP JP2001503529A patent/JP2003508730A/ja active Pending
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See also references of EP1190253A1 * |
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EP1138048A1 (fr) * | 1998-11-19 | 2001-10-04 | Bio Merieux | Polymeres conjugues fonctionnalises capables d'electroconductivite et d'electroactivite, et utilisations de ces polymeres |
WO2001013115A3 (fr) * | 1999-08-16 | 2001-08-23 | Wolf Bertling | Procede et dispositif d'identification d'une sequence de biopolymere sur des surfaces de corps solides |
US6824669B1 (en) | 2000-02-17 | 2004-11-30 | Motorola, Inc. | Protein and peptide sensors using electrical detection methods |
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WO2001086298A1 (fr) * | 2000-05-10 | 2001-11-15 | Asulab S.A. | Procede d"immobilisation de constituants de reconnaissance |
US7063978B2 (en) | 2001-11-01 | 2006-06-20 | 3M Innovative Properties Company | Coated film laminate having an electrically conductive surface |
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JP2006517186A (ja) * | 2002-09-04 | 2006-07-20 | ボード オブ リージェンツ ユニバーシティ オブ テキサス システム | 二機能性の生体材料の組成物、方法、および使用 |
WO2004037405A1 (fr) * | 2002-10-28 | 2004-05-06 | Apibio Sas | Biopuce et procede de traitement d'une pluralite de biopuces |
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US7446186B2 (en) | 2002-12-19 | 2008-11-04 | Biomerieux | Pyrroles substituted by oligonucleotides |
WO2004060904A1 (fr) * | 2002-12-19 | 2004-07-22 | Biomerieux Sa | Pyrroles substitues avec des oligonucleotides |
FR2849038A1 (fr) * | 2002-12-19 | 2004-06-25 | Apibio | Nouveaux pyrroles substitues avec des oligonucleotides, polymeres electroactifs et leurs utilisations |
US7879594B2 (en) | 2003-03-14 | 2011-02-01 | Biomerieux | Method and device for detecting biomolecules |
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US10190150B2 (en) | 2006-10-24 | 2019-01-29 | Ascensia Diabetes Care Holdings Ag | Determining analyte concentration from variant concentration distribution in measurable species |
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AU776997B2 (en) | 2004-09-30 |
AU5475700A (en) | 2001-01-02 |
JP2003508730A (ja) | 2003-03-04 |
EP1190253A1 (fr) | 2002-03-27 |
CA2376532A1 (fr) | 2000-12-21 |
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