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WO2000066786A3 - Sondes polynucleotidiques destinees a la detection et a la quantification d'actinomycetes - Google Patents

Sondes polynucleotidiques destinees a la detection et a la quantification d'actinomycetes Download PDF

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Publication number
WO2000066786A3
WO2000066786A3 PCT/US2000/012243 US0012243W WO0066786A3 WO 2000066786 A3 WO2000066786 A3 WO 2000066786A3 US 0012243 W US0012243 W US 0012243W WO 0066786 A3 WO0066786 A3 WO 0066786A3
Authority
WO
WIPO (PCT)
Prior art keywords
actinomycetes
polynucleotide probes
quantitation
detection
subset
Prior art date
Application number
PCT/US2000/012243
Other languages
English (en)
Other versions
WO2000066786A2 (fr
Inventor
James J Hogan
Patricia Gordon
Original Assignee
Gen Probe Inc
James J Hogan
Patricia Gordon
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc, James J Hogan, Patricia Gordon filed Critical Gen Probe Inc
Priority to DE60028758T priority Critical patent/DE60028758T2/de
Priority to CA2370123A priority patent/CA2370123C/fr
Priority to AU47021/00A priority patent/AU768210B2/en
Priority to EP00928846A priority patent/EP1177316B1/fr
Priority to JP2000615408A priority patent/JP4488629B2/ja
Publication of WO2000066786A2 publication Critical patent/WO2000066786A2/fr
Publication of WO2000066786A3 publication Critical patent/WO2000066786A3/fr

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S435/00—Chemistry: molecular biology and microbiology
    • Y10S435/81—Packaged device or kit

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Botany (AREA)
  • Mycology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

L'invention concerne des sondes polynucléotidiques et des oligonucléotides assistants auxilliaires utilisés pour détecter le sous-ensemble du sous-ensemble supérieur (G+C) des bactéries Gram positif connues sous le nom d' « actinomycènes ». Les sondes d'hybridation présentent une haute spécificité pour les actinomycètes et ne subissent aucune hydridation croisée avec l'ARNr et l'ADNr des nombreuses autres espèces bactériennes et fongiques.
PCT/US2000/012243 1999-05-03 2000-05-03 Sondes polynucleotidiques destinees a la detection et a la quantification d'actinomycetes WO2000066786A2 (fr)

Priority Applications (5)

Application Number Priority Date Filing Date Title
DE60028758T DE60028758T2 (de) 1999-05-03 2000-05-03 Polynukleotidsonden zur detektion und quantifizierung von actinomycetes
CA2370123A CA2370123C (fr) 1999-05-03 2000-05-03 Sondes polynucleotidiques destinees a la detection et a la quantification d'actinomycetes
AU47021/00A AU768210B2 (en) 1999-05-03 2000-05-03 Polynucleotide probes for detection and quantitation of actinomycetes
EP00928846A EP1177316B1 (fr) 1999-05-03 2000-05-03 Sondes polynucleotidiques destinees a la detection et a la quantification d'actinomycetes
JP2000615408A JP4488629B2 (ja) 1999-05-03 2000-05-03 放線菌類の検出および定量化のためのポリヌクレオチドプローブ

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US13241299P 1999-05-03 1999-05-03
US60/132,412 1999-05-03

Publications (2)

Publication Number Publication Date
WO2000066786A2 WO2000066786A2 (fr) 2000-11-09
WO2000066786A3 true WO2000066786A3 (fr) 2001-07-12

Family

ID=22453931

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2000/012243 WO2000066786A2 (fr) 1999-05-03 2000-05-03 Sondes polynucleotidiques destinees a la detection et a la quantification d'actinomycetes

Country Status (10)

Country Link
US (1) US6235484B1 (fr)
EP (1) EP1177316B1 (fr)
JP (1) JP4488629B2 (fr)
AT (1) ATE330033T1 (fr)
AU (1) AU768210B2 (fr)
CA (1) CA2370123C (fr)
DE (1) DE60028758T2 (fr)
DK (1) DK1177316T5 (fr)
ES (1) ES2265344T3 (fr)
WO (1) WO2000066786A2 (fr)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6670130B1 (en) * 1999-05-29 2003-12-30 Sj Hightech Co., Ltd. Oligonucleotide for detection and identification of Mycobacteria
US7070933B2 (en) * 2001-09-28 2006-07-04 Gen-Probe Incorporated Inversion probes
US20050065330A1 (en) * 2002-04-24 2005-03-24 The Cleveland Clinic Foundation Identification of Histoplasma capsulatum using a PCR assay
JP2006507798A (ja) * 2002-05-17 2006-03-09 アプレラ　コーポレイション Ｌｉｓｔｅｒｉａの決定に関するＰＮＡプローブ、プローブセット、方法およびキット
DE10232775A1 (de) * 2002-07-18 2004-02-12 Henkel Kgaa Nachweis von Mikroorganismen
US7786289B2 (en) * 2003-05-13 2010-08-31 Gen-Probe Incorporated Method and kit for identifying antibiotic-resistant microorganisms
US20050153307A1 (en) * 2003-08-14 2005-07-14 Henrik Stender PNA oligomers, oligomer sets, methods and kits pertaining to the determination of Enterococcus faecalis and other Enterococcus species
EP2529034B1 (fr) * 2010-01-26 2018-01-24 The Translational Genomics Research Institute Procédés de détection de champignons

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0318245A2 (fr) * 1987-11-24 1989-05-31 Gen-Probe Incorporated Moyen et méthode pour augmenter l'hybridation d'acide nucléique
US5681698A (en) * 1991-04-25 1997-10-28 Gen-Probe Incorporated 23S rRNA nucleic acid probes to mycobacterium kansasii
EP0808907A2 (fr) * 1996-05-22 1997-11-26 Gen-Probe Incorporated Compositions et procédés pour la détection de Mycobacterium kansasii
US5714321A (en) * 1986-11-24 1998-02-03 Gen-Probe Incorporated Nucleic acid probes and methods for detecting salmonella
WO2000066789A2 (fr) * 1999-05-03 2000-11-09 Gen-Probe Incorporated Methode d'identification de micro-organismes a partir d'une matrice polynucleotidique

Family Cites Families (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
ATE98300T1 (de) 1983-01-10 1993-12-15 Gen Probe Inc Verfahren zum aufspueren, identifizieren und quantifizieren von organismen und viren.
CA1296604C (fr) 1986-03-20 1992-03-03 Kathleen Murphy Methode de liberation de l'arn et de l'adn des cellules
CA1317860C (fr) 1987-04-01 1993-05-18 Daniel Louis Kacian Techniques pour la preparation de specimens pour des epreuves bacteriennes
US5283174A (en) 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
US6031091A (en) 1987-09-21 2000-02-29 Gen-Probe Incorporated Non-nucleotide linking reagents for nucleotide probes
US5185439A (en) 1987-10-05 1993-02-09 Gen-Probe Incorporated Acridinium ester labelling and purification of nucleotide probes
US5998135A (en) 1989-02-24 1999-12-07 Enzo Diagnostics, Inc. Energy transfer hybridization assay using intercalators and lanthanide metals
US5656207A (en) 1989-06-24 1997-08-12 Gen Probe Incorporated Detecting or quantifying multiple analytes using labelling techniques
CA2020958C (fr) 1989-07-11 2005-01-11 Daniel L. Kacian Methodes d'amplification de sequences d'acide nucleique
US5635348A (en) 1990-10-05 1997-06-03 Hoffmann-La Roche Inc. Method and probes for identifying bacteria found in blood
US5539082A (en) 1993-04-26 1996-07-23 Nielsen; Peter E. Peptide nucleic acids
AU693836B2 (en) 1993-11-29 1998-07-09 Gen-Probe Incorporated Method for extracting nucleic acids from a wide range of organisms
US5824473A (en) 1993-12-10 1998-10-20 California Institute Of Technology Nucleic acid mediated electron transfer
US5591578A (en) 1993-12-10 1997-01-07 California Institute Of Technology Nucleic acid mediated electron transfer
US5708160A (en) 1995-04-26 1998-01-13 The National Research Council HSP-60 genomic locus and primers for species identification
EP0826778A1 (fr) 1996-09-03 1998-03-04 Peter Kaufmann Sondes oligonucléotides pour la détection de bifidobactéria
AU739375B2 (en) 1996-11-05 2001-10-11 Clinical Micro Sensors, Inc. Electrodes linked via conductive oligomers to nucleic acids
US6013459A (en) 1997-06-12 2000-01-11 Clinical Micro Sensors, Inc. Detection of analytes using reorganization energy
US7560237B2 (en) 1997-06-12 2009-07-14 Osmetech Technology Inc. Electronics method for the detection of analytes
CA2303463A1 (fr) 1997-09-18 1999-03-25 Merck Sharp & Dohme De Espana, S.A.E. Sondes d'hybridation destinees a differencier les streptomycetes des maduromycetes
US5945286A (en) 1997-10-23 1999-08-31 Motorola, Inc. Electrochemical-based molecular detection apparatus and method
EP1044284A2 (fr) 1998-01-08 2000-10-18 Merck Sharp & Dohme de Espana S.A.E. Sondes d'hybridation pouvant faire la differenciation entre le groupe de bacteries actinomadura madurae et les bacteries maduromycetes

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5714321A (en) * 1986-11-24 1998-02-03 Gen-Probe Incorporated Nucleic acid probes and methods for detecting salmonella
EP0318245A2 (fr) * 1987-11-24 1989-05-31 Gen-Probe Incorporated Moyen et méthode pour augmenter l'hybridation d'acide nucléique
US5681698A (en) * 1991-04-25 1997-10-28 Gen-Probe Incorporated 23S rRNA nucleic acid probes to mycobacterium kansasii
EP0808907A2 (fr) * 1996-05-22 1997-11-26 Gen-Probe Incorporated Compositions et procédés pour la détection de Mycobacterium kansasii
WO2000066789A2 (fr) * 1999-05-03 2000-11-09 Gen-Probe Incorporated Methode d'identification de micro-organismes a partir d'une matrice polynucleotidique

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
DATABASE EMBL EMBL; 12 February 1991 (1991-02-12), "Franckia sp. 5S, 16S, and 23S ribosomal RNA genes, complete sequences", XP002155629 *
DATABASE EMBL EMBL; 4 July 1994 (1994-07-04), "M. avium 23s ribosomal gene", XP002155679 *
NORMAND ET AL: "Analysis of the ribosomal RNA operon of the actinomycete Franckia", GENE, vol. 111, 1992, pages 119 - 124, XP023542556, DOI: doi:10.1016/0378-1119(92)90612-S *
VAN DER GIESSEN: "Comparison of the 23s ribosomal RNA genes and the spacer region between the 16s and the 23s rRNA genes of the closely related Mycobacterium avium and Mycobacterium paratuberculosis and the fast-growing Mycobacterium phlei", MICROBIOLOGY, vol. 140, 1994, pages 1103 - 1108 *

Also Published As

Publication number Publication date
DE60028758T2 (de) 2007-05-24
JP2002542806A (ja) 2002-12-17
DK1177316T3 (da) 2006-10-09
AU768210B2 (en) 2003-12-04
DE60028758D1 (de) 2006-07-27
ATE330033T1 (de) 2006-07-15
EP1177316B1 (fr) 2006-06-14
ES2265344T3 (es) 2007-02-16
DK1177316T5 (da) 2006-11-06
AU4702100A (en) 2000-11-17
CA2370123C (fr) 2010-09-14
EP1177316A2 (fr) 2002-02-06
JP4488629B2 (ja) 2010-06-23
US6235484B1 (en) 2001-05-22
WO2000066786A2 (fr) 2000-11-09
CA2370123A1 (fr) 2000-11-09

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