WO1999003488A2

WO1999003488A2 - Biologically active peptides with reduced toxicity in animals and a method for preparing same

Info

Publication number: WO1999003488A2
Application number: PCT/US1998/014610
Authority: WO
Inventors: U. Prasad Kari; Taffy J. Williams; Michael Mclane
Original assignee: Magainin Pharmaceuticals Inc.
Priority date: 1997-07-15
Filing date: 1998-07-15
Publication date: 1999-01-28
Also published as: AU8300598A; CA2294518A1; JP2001510164A; EP1001800A2; WO1999003488A3

Abstract

The present invention relates to biologically active peptides with reduced toxicity and methods of preparing them. The peptides of the invention, which can be unsubstituted or N-terminal substituted have formula (I), wherein X is a biologically active amphiphilic ion channel-forming peptide or protein, T is a lipophilic moiety or hydrogen, and W is T or hydrogen. Preferably T is formula (II), wherein R is a hydrocarbon (alkyl or aromatic or alkylaromatic) having at least 2 and no more than 10 carbon atoms. T is preferably an octanoyl group. The peptides and proteins of the invention have improved antimicrobial and anti-tumor biological activity while exhibiting reduced toxicity. A preferred method of reducing toxicity involves the formation of related methane sulfonate derivatives or analogues. Additionally, the compounds of the invention may be used to treat sepsis, septic shock, and lung infections, such as those occuring in cystic fibrosis.

Description

BIOLOGICALLY ACTIVE PEPTIDES WITH SEDUCED TOXICITY IN ANIMALS AND A METHOD FOR PREPARING SAME

RELATED APPLICATION DATA

This application is a contmuation-in-part of U.S. Patent Application Serial No. 08/893,006 filed July 15, 1997, which is a continuation-m-part of U.S. Patent Application Serial No. 08/465,330 filed June 5, 1995, which is a divisional of U.S. Patent Application Serial No. 08/184,462 filed January 18, 1994, now abandoned, which is a continuation-in-part of U.S. Patent Application Serial No. 07/891,201 filed June 1, 1992, now abandoneα . Each of these U.S. patents and applications is entirely incorporated herein by reference.

BACKGROUND AND SUMMARY OF THE INVENTION

This invention relates to biologically active peptiαes. More particularly, this invention relates to biologically active peptides with reduced toxicity. Further, this invention relates to a method of modifying biologically active peptides, that are either N-terminally (ammo-terminal) substituted or unsubstituted, to reduce their toxicity in animals.

In accordance with an aspect of the present invention, there is provided an unsubstituted biologically active peptide or protein. In another aspect, there is provided a N-terminal substituted peptide or protein having the formula:

W

I

T - N - X,

wherein X is a biologically active peptide or protein , and N is a nitrogen atom . The peptide or protein is preferably an ion channel-forming peptide or protein. T is a lipopkϋic moiety, and W is another T group or hydrogen.

The term "lipophilic, " as used herein, means that the lipophilic moiety enhances the interaction of the peptide or protein with a lipid membrane, such as, for example, a cell membrane .

Lipophilic moieties which may be employed, include, but are not limited to, any moiety which may be placed on the N-termmal of the peptide through a condensation reaction with nitrogen. The lipophilic moiety T may be, for example, a carboxylic acid, a phosphoric acid, preferably an alkylphosphoric acid, a phosphonic acid, preferably an alkylphosphonic ac d, a sulfonic acid, preferably an alkylsulfonic acid, or an alkyl group. Preferably T is:

0 R - C - , wherein R is a hydrocarbon having at least two and no more than 16 carbon atoms.

In one embodiment, R is an alkyl group. The alkyl group may be a straight chain or branched chain alkyl group, or a cycloalkyl group. For example, R may be CH₃(CH₂) -, wherein n is from 1 to 14. Preferably, n is from 3 to 12, more preferably from 4 to 11, still more preferably from 6 to 11, and most preferably n is 6, whereby T is an octanoyl group.

In another embodiment, R is an aromatic (including phenyl and naphthyl), or an alkyl aromatic group. For example, R may be

wherein z is from 0 to 6. Preferably, z is 1 or 2 In another embodiment, R is

wherein n is from 1 to 5. Preferably n is 1, whereby R is an ibuprofyl group.

In yet another embodiment, T is:

0

II

HOOC - (CH₂)_X -C , wherein x is from 1 to 14. Preferably, x is 2, and T is a succinyl group.

In another embodiment, T is:

CH₂OH

I

CH₃ (CH₂) _y-CH=CH-CH-CH-NH-, OH wherein y is from 1 to 14. Preferably, y is 12, whereby T is a sphingosine group.

In yet another embodiment T is

CH₂OH 0 0

II

CH₃ (CH₂) _y-CH=CH-CH-CH-NH-C-(CH₂) _X-C-, OH wherein x and y are hereinabove described. Preferably, x is 2, and y is 12.

In one embodiment, W is hydrogen.

Applicant has found that when biologically active peptides have substitutions at the N-terminal such as those hereinabove described, such peptides have increased biological activity against target cells, viruses, and virally-infected cells, as compared with unsubstituted peptides or peptides substituted at the N-terminal with an acetyl group. Applicant also has found that the N-terminal substitutions hereinabove described significantly increase the biological activity of "short" peptides, i.e., peptides having no more than 14 amino acid residues .

In another embodiment of this invention the biologically active peptides are not N-terminally substituted and have broad spectrum anti-tumor and anti-microbial activity.

As hereinabove stated, the biologically active peptides or proteins of the present invention are preferably ion channel- forming peptides. An ion channel-forming peptide or protein or ionophore is a peptide or protein which increases the permeability for ions across a natural or synthetic lipid membrane. B. Christensen, et al., PNAS Vol. 85, pgs . 5072-5076 (July 1988) describes a methodology which indicates whether or not a peptide or protein has ion channel-forming properties and is therefore an ionophore. As used herein, an ion channel- forming peptide or ion channel-forming protein is a peptide or protein which has ion channel-forming properties as determined by the method of Christensen, et al . This Christensen article is entirely incorporated herein by reference.

An amphiphilic peptide or protein is a peptide or protein which includes both hydrophobic and hydrophilic peptide or protein regions .

The ion channel-forming peptides employed in the present invention are generally water soluble to a concentration of at least 20 mg/ml at neutral pH in water. In addition, the structure of such peptides provides for flexibility of the peptide molecule. Such peptides are capable of forming an alpha-helical structure. When the peptide is placed in water, it does not assume an amphiphilic structure. When the peptide encounters an oily surface or membrane, the peptide chain folds upon itself nto a rodlike structure.

In general, such peptides have at least 7 ammo acids, and n many cases have at least 20 ammo acids. In most cases, such peptides αo not nave m excess of 40 am o acids.

The peptides and/or analogues cr derivatives tnereof may be administered to a host, for example a human or non-human animal, in an amount effective to inhibit growth of a target cell, virus, or virally- fected cell. Thus, for example, the peptides and/or analogues or derivatives thereof may be used as anti-microbial agents, anti-viral agents, anti-bacterial agents, anti-tumor agents, anti-parasitic agents, and spermicides, as well as agents exhibiting other bioactive functions.

The term "anti-microbial" as used herein means that the peptides or proteins of the present invention inhibit, prevent, or destroy the growth or proliferation of microbes, such as bacteria, fungi, viruses, or the like.

The term "anti-bacterial" as used herein means that the peptides or proteins employed in the present invention produce effects adverse to the normal biological functions of bacteria, including death, destruction, or prevention of the growth or proliferation of the bacteria when contacted with the peptides or proteins .

The term "antibiotic" as used herein means that the peptides or proteins employed in the present invention produce effects aαverse to the normal biological functions of the non- host cell, tissue, or organism, including death, αestruction, or prevention of the growth or proliferation of the non-host cell, tissue, or organism when contacted with the peptiαes or proteins .

The term "spermicidal" as used herein means that the peptides or proteins employed m the present invention inhibit, prevent, or destroy the motility of sperm.

The term "anti-fungal" as used herein means that the peptides or proteins employed in the present invention inhibit, prevent, or destroy the growth or proliferation of fungi.

The term "anti-viral" as used herein means that the peptides or proteins employed in the present invention inhibit, prevent, or destroy the growth or proliferation of viruses, or of virally-infected cells. The term "anti-tumor" as used herein means that the peptides or proteins inhibit the growth of or destroy tumors, including cancerous tumors.

The term "anti-parasitic" as used herein means that the peptides or proteins employed in the present invention inhibit, prevent, or destroy the growth or proliferation of parasites.

The peptides or proteins of the present invention have a broad range of potent anti-tumor and antibiotic activity against a plurality of tumor types and microorganisms, including gram- positive and gram-negative bacteria, fungi, protozoa, and the like, as well as parasites. The peptides or proteins of the present invention allow a method for treating or controlling tumor growth and microbial infection caused by organisms which are sensitive to the peptides or proteins. Such treatment may comprise administering to a host organism or tissue susceptible to or affiliated with a microbial infection an anti-tumor or anti-microbial amount of at least one of the peptides or proteins .

In another embodiment of this invention, methods are provided for reducing the toxicity of unmodified peptides or of N-termmally modified peptides in a host without reducing the anti-tumor or anti-microbial activity of the peptides. This method includes forming a methane sulfonate derivative or analogue of an unsubstituted peptides or N-termmal substituted peptide having the formula:

T

I

T - N - X wherein X is a biologically active peptide or protein, the peptide being an ion channel-forming peptide or protein, T is a lipophilic moiety or hydrogen. The anti-tumor or anti-microbial activity of the methane sulfonate derivative or analogue of the unsubstituted or N-terminal substituted peptide is not reduced or is not significantly reduced as compared to the corresponding peptide not derivatized with a methane sulfonate group. The phrase "not significantly reduced," as used in this application, means that the methane sulfonate derivatives or analogues retain anti-tumor or anti-microbial activity of the underivatized compounds. Preferably, the methane sulfonate derivatives or analogues retain at least 50%, and preferably 75% or more, of the anti-tumor or anti-microbial activity of the underivatized compounds .

In one embodiment of the invention, the methane sulfonate derivative can be formed by suspending a free base of the unsubstituted or N-terminal substituted peptide water, and then mixing the suspended peptide and at least C.5 equivalents of a sodium oisulfite-formaldehyde complex (or other suitable bisulfite-formaldehyde complex) for each free ammo group in the peptide. This reaction proceeds for a period of 10 minutes or more to produce the methane sulfonate derivative or analogue of the peptide.

The amount of the bisulfite-formaldehyde complex can be varied without departing from the invention. Preferably, the suspended free base is mixed with 0.5 to 10 equivalents of the bisulfite-formaldehyde complex for each free ammo group in the peptide. The use of 1 to 5 equivalents is preferred, and 1.1 to 3 equivalents is particularly preferred.

In the process according to this embodiment of the invention, the mixing period also can be varied widely. Preferably the peptide free base and complex are mixed for a period of 10 minutes to 2 hours, or 10 minutes to 1 hour. A mixing period in the range of from 15 minutes to 30 minutes is particularly preferred.

The starting free base of the unsubstituted peptide or N- term al substituted peptide can be prepared by neutralizing a salt of tr.e peptide. This neutralization can take place by treating the salt with a base solution, such as a sodium carbonate solution. After neutralization, the free base peptide, which may precipitate, can be isolated prior to suspending it in the water.

After the reaction procedure is completed, the methane sulfonate derivative or analogue of the peptide product can be recovered, e.g., by filtering. Additionally, this product can be lyophilized, if desired.

One method according to this embodiment of the invention can be summarized by the reaction equation provided below:

T ( NH₂ ) _n T - N - X - C - NH₂ + sodium bisulfite formaldehyde complex

II

0 o

—

wherein X is a biologically active peptide or protein, N is a nitrogen atom and T is a lipophilic moiety or hydrogen. The peptide or protein is preferably an ion channel-forming peptide or protein.

In another embodiment or the invention the methane sulfonate derivative is formed by mixing the peptide salt with 12.5 equivalents of 30% formaldehyde solution and 6.25 equivalents of 1M sodium bicarbonate solution for eacn ammo group in the peptide. The adduct of the peptide with formaldehyde precipitates and can be collected oy centrifugation of filtration. The sodium methane sulfonate derivative is then formed by mixing the formaldehyde adduct with sodium metabisulfite .

The methane sulfonate analogue of the peptide is shown to have reduced toxicity in vivo, but retains its anti-tumor and anti-microbial activity.

Because of the antibiotic, anti-microbial, anti-viral, and anti-bacterial properties of the peptides or proteins, they may also be used as preservatives, sterilants, or disinfectants of materials susceptible to microbial or viral contamination.

The peptide or proteins and/or derivatives or analogues thereof may be administered in combination with a non-toxic pharmaceutical carrier or vehicle such as a filler, a non-toxic buffer, or a physiological saline solution. Such pharmaceutical compositions may be used topically or systemically ana may be in any suitable form such as a liquid, solid, semi-solid, miectable solution, tablet, ointment, lotion, paste, capsule, or the like. The peptide or protein compositions may also be used in combination with ad uvants, protease inhibitors, or compatible drugs where such a combination is seen to be desirable or advantageous in controlling infection caused by harmful microorganisms including protozoa, viruses, and the like, as well as by parasites.

The peptides or proteins of the present invention may be administered to a host, in particular a human or non-human animal, in an effective antiD_.otιc and/or anti-tumor aid/or anti-fungai and/or anti-viral and/or anti-microbial and/or antibacterial and/or anti-parasitic and/or spermicidal amount.

Depenαing on the use, a composition accordance with the invention will contain an effective anti-microbial amount and/or an effective spermicidal amount and/or an effective anti-fungal amount and/or an effective anti-viral amount and/or an effective anti-tumor amount and/or an effective anti-parasitic amount and/or an effective antibiotic amount of one or more of the peptides or proteins of the present invention which have such activity. The peptides or proteins may be administered by direct application of the peptides or proteins to the target cell, virus, or virally-infected cell, or indirectly applied through systemic administration.

The peptides or proteins of the present invention may also be employed in promoting or stimulating healing of a wound in a host .

The term "wound healing" as used herein includes various aspects of the wound healing process. These aspects include, but are not limited to, increased contraction of the wound, increased deposition of connective tissue, as evidenced by, for example, increased deposition of collagen in the wound, and increased tensile strength of the wound, i.e., the peptides or proteins increase wound breaking strength. The peptides or proteins of the present invention may also be employed so as to reverse the inhibition of wound healing caused by conditions which depress or compromise the immune system.

The peptides or proteins of the present invention may be used in the treatment of external burns and to treat and/or prevent skin and burn infections. In particular, the peptides or proteins may be used to treat skin and burn infections caused by organisms such as, but not limited to, P. aeruginosa and S. aureus .

The peptides or proteins are also useful in the prevention or treatment of eye infections. Such infections may be caused by bacteria such as, but not limited to, P. aeruginosa , S. aureus, and N. gonorrhoeae, by fungi such as, but not limited to, C. albicans and A. fumiga tus, by parasites such as, but not limited to, A. castellam, or by viruses.

The peptides or proteins may also be effective in killing cysts, spores, or trophozoites of infection-causing organisms. Such organisms include, but are not limited to Acanthamoeba , which form trophozoites or cysts, C. albicans, which form spores, and A. fumiga tus, which also form spores.

The peptides or proteins of the present invention may also be employed in the treatment of tumors. In general, tney are active against tumors that arise in tissues and organs such as, but not limited to, breast, lung, colon, rectum, cervix, ovaries prostate, stomach, as well as melanoma and leukemias. More specifically, they are active against non-small cell _.ung carcinomas and aαenocarcmomas of, for example, the breast, cervix, prostate, lung, colon, rectum, stomach, and ovaries. In addition, the peptides and proteins of the present invention are active against tumors that are resistant to other anti-tumor agents. A significant reason for resistance, the removal of anti-tumor agents by the efflux pump, is not believed to apply to the peptides and proteins of the present invention which are believed to function via the unique mechanism of forming ion channels .

The peptides or proteins may also be administered to plants in an effective anti-microbial or anti-viral or anti-parasitic amount to prevent or treat microbial, viral, or parasitic contamination thereof. The peptides or proteins of the present invention may also be employed in the treatment of serious lung infections. In particular, the peptides or proteins may be used to treat lung infections caused by organisms such as, but not limited to, P. aeruginosa in cystic fibrosis patients. In general, in the treatment of such infections, the peptides or proteins are administered to a subject in need of treatment by an inhalation procedure. For example, the active peptide or protein ingredient can be delivered by inhalation using either a nebulizer, metered dose inhaler (MDI), or a dry powder inhaler (DPI) .

In employing such compositions by inhalation, the active peptide or protein is present in the following amounts : for a nebulizer, a solution of between 5 and 200 mg/ml; for MDI or DPI, an amount between 0.5 and 45 mg .

The peptides or proteins also may be administered to a subject for treating sepsis, septic shock, and other related ailments, _r that such peptides neutralize bacterial endotoxins . In genera-, the peptiαes or proteins are positively charged, while, m general, the bacterial endotoxins are negatively charged. The peptides or proteins are particularly useful that such compounds neutralize bacterial endotoxins without neutralizing essential proteins in plasma (such as heparin, for example) .

"Treat," "treated," or "treating," as used m this application, may mean complete elimination of a disease, ailment, or symptoms, or it may mean reducing, suppressing, or ameliorating the severity of the disease, ailment, or symptoms.

The peptides or proteins, when used in topical compositions, are generally present in an amount of at least 0.1%, by weight. In most cases, it is not necessary to employ the peptide in an amount greater than 2.0%, by weight.

In employing such compositions systemically (intramuscular, intravenous, intraperitoneal) , the active peptide or protein is present in an amount to achieve a serum level of the peptide of at least about 5 μg/ml. In general, the serum level cf peptide or protein need not exceed 500 μg/ml. A preferred serum level is about 100 μg/ml. Such serum levels may be achieved by incorporating the peptide or protein in a composition to be administered systemically at a dose of from 1 to about 10 mg/kg. In general, the peptide (s) or protein (s) need not be administered at a dose exceeding 100 mg/kg.

The peptides or proteins may be produced by known techniques and obtained in substantially pure form. For example, the peptides may be synthesized on an automatic peptide synthesizer. Journal of the American Chemical Society, Vol. 85, pgs. 2149-54 (1963) (which article is entirely incorporated herein by reference) . It also is possible to produce such peptides or proteins by genetic engineering techniques. The codons encoding specific amino acids are known to those skilled in the art, and therefore, DNA encoding the peptides may be constructed by appropriate techniques, and one may clone such DNA into an appropriate expression vehicle (e.g., a plasmid) which is transfected into an appropriate organism for expression of the peptide or protein.

In one embodiment of the invention, upon production or synthesis of the peptide or protein, the N-terminal (NH₂ or amino terminal) of the peptide is reacted such that the lipophilic moiety is attached to the N-terminal of the peptide. For example, the reaction may be a condensation reaction with an amine. When the lipophilic moiety T is

0

II

R - C -, the N-termmal is reacted with a carboxylic acid of the formula R-COOH, wherein R is a hydrocarbon having at least 2 carbon atoms . The reaction may be carried out in the presence of a coupling agent, such as, for example, DCC, or DIC, and HOBT, or in the presence of an acid chloride. Such a reaction results in the formation of an N-terminal substituted peptide or protein having the structural formula hereinabove described.

In one embodiment, X is a peptide which is a basic (positively charged) polypeptide having at least sixteen amino acids, wherein the polypeptide includes at least eight hydrophobic amino acids and at least eight hydrophilic amino acids. Still more particularly, the hydrophobic amino acids are in groups of two adjacent amino acids, and each group of two hydrophobic amino acids is spaced from another group of two hydrophobic amino acids by at least one amino acid other than a hydrophobic amino acid (preferably at least two amino acids) and generally by no greater than four am o acids, and the amino acids between pairs of hydrophobic am o acids may or may not be hydrophilic.

The hydrophilic ammo acids are generally also in groups of two adjacent amino acids in which at least one of the two amino acids is a basic hydrophilic amino acid, with such groups of two hydrophilic amino acids being spaced from each other by at least one amino acid other than a hydrophilic amino acid (preferably at least two ammo acids) and generally no greater than four amino acids, and the ammo acids between pairs of hydrophilic am o acids may or may not be hydrophobic.

In accordance with a particularly preferred embodiment, the polypeptide comprises a chain of at least four groups of amino acids, with each group consisting of four ammo acids. Two of the four ammo acids in each group are hydrophobic ammo acids, and two of the four ammo acids in each group are hydrophilic, with at least one of the hydrophilic ammo acids in each group being a basic hydrophilic ammo acid and the other being a basic or neutral hydropnilic ammo acid.

The hydrophobic amino acids may be selected from the class consisting of Ala, Cys, Phe, Gly, lie, Leu, Met, Pro, Val, Trp, Tyr, norleuc e (Nle) , norvaline (Nva), and cyclohexylalan e (Cha) . The neutral hydrophilic amino acids may be selected from the class consisting of Asn, Gin, Ser, Thr, and homoserine (Hse) . The basic hydrophilic amino acids may be selected from the class consisting of Lys, Arg, His, Orn, homoarginone (Har) , 2, 4-diamιnobutyrιc acid (Dbu), and p-aminophenylalanme . Each of the groups of four amino acids may be of the sequence ABCD, BCDA, CDAB, or DABC, wherein A and B are each hydrophobic ammo acids and may be the same or different, one of C, or D is a basic hydrophilic amino acid, and the other of C or D is a basic or neutral hydrophilic ammo acid and may be the same or different. In one embodiment, the polypeptide chain may comprise 5 or 6 groups of this sequence. In each group, each of A, B, C, and D may be the same in some or all of the groups or may be different in some or all of the groups.

The polypeptide chain preferably has at least 20 ammo acids, ana no greater than 50 ammo acids. It is to be understood, however, that the polypeptide does not have to consist entirely of the groups described above. The polypeptide may have ammo acids extending from either or both ends of the noted groups forming tne polypeptide chain and/or there may be am o aciαs between one or more of the at least four groups and still remain within the scope of the invention.

The groups of am o acids may be repeating groups of amino acids, or the ammo acids in the various groups may vary, provided tnat m each group of the at least four groups of ammo acids there are two hydrophobic and two hydrophilic ammo acids as here aoove noted.

Thus, the biologically active polypeptide may comprise a chain including at least four groups of amino acids, each containing four ammo acids . Two of the four ammo acids in each group are hydrophobic, at least one amino acid is basic hydrophilic, and the remaining one is basic or neutral hydrophilic, with the polypeptide chain preferably having at least 20 amino acids but no greater than 50 amino acids.

In one embodiment, each of the at least four groups of amino acids which are in the peptide chain is of the sequence A- B-C-D, B-C-D-A, C-D-A-B or D-A-B-C wherein A and B are hydrophobic amino acids, one of C or D is a basic hydrophilic amino acid, and the other of C or D is basic or neutral hydrophilic amino acid. The resulting polypeptide chain, therefore, may have one of the following sequences:

(X A-B-C-DI Y,),

(X₂)_a(B-C-D-A)_n(Y₂)_b

(X₃)_a(C-D-A-B)_n(Y₃)_b

(X«)_a(D-A-B-C)_n(Y₄)_b wherein X_: is D or C-D- or B-C-D-;

Y_x is -A or -A-B or -A-B-C;

X₂ is A-, D-A- or C-D-A-;

Y₂ is -B, -B-C or B-C-D;

X₃ is B-, A-B-, D-A-B-;

Y₃ is -C, -C-D, -C-D-A

X„ is C-, B-C-, A-B-C-;

Y₄ is -D, -D-A, -D-A-B; a is 0 or 1; b is 0 or 1; and n is at least 4.

It is to be understood that the peptide chain may include amino acids between the hereinabove noted groups of four amino acids provided that the spacing between such groups and the charge on the amino acids does not change the characteristics of the peptide chain which provide amphiphilicity and a positive charge and does not adversely affect the folding characteristics of the chain to that which is significantly different from one in which the hereinabove noted groups of four amino acids are not spaced from each other.

As representative examples of such peptides, the following may be mentioned:

I Ala-Phe-Ser-Lys-Ala-Phe-Ser-Lys-Ala-Phe-Ser- Lys-Ala-Phe-Ser-Lys-Ala-Phe-Ser-Lys

(SEQ ID NO:l)

II Ala-Phe-Ser-Lys-Ala-Phe-Ser-Lys-Ala-Phe-Ser- Lys-Al -Phe-Ser-Lys-Ala-Phe-Ser-Lys-Ala-Phe- Ser-Lys. (SEQ ID NO:2)

III Phe-Ser-Lys-Ala-Phe-Ser- Lys-Ala-Phe-Ser-Lys-Ala- Phe-Ser-Lys-Ala- (SEQ ID NO:3)

IV Ser-Lys-Ala-Phe-Ser-Lys-Ala- Phe-Ser-Lys-Ala-Phe-Ser-Lys-Ala- Phe-Ser-Lys-Ala-Phe- (SEQ ID NO: 4)

V Lys-Ala-Phe-Ser-Lys-Ala-Phe-Ser-Lys-Ala-Phe-Ser- Lys-Ala-Phe-Ser (SEQ ID NO:5)

The peptide may have amino acids extending from either end of the chain. For example, the chains may have a Ser-Lys sequence before the "Ala" end, and/or an Ala-Phe sequence after the "Lys" end. Other amino acid sequences may also be attached to the "Ala" and/or the "Lys" end.

Similarly, in any polypeptide chain having at least four groups of amino acids of the sequence as described above, the chain may have, for example, a C-D sequence before the first A- B-C-D group. Also other amino acid sequences may be attached to the "A" and/or the "D" end of one of these polypeptide chains. Also, there may be amino acids in the chain which space one or more groups of the hereinabove noted four amino acids from each other .

In accordance with another embodiment, X is a magainin peptide .

A magainin peptide is either a magainin such as magainin I, II, or III, or an analogue or derivative thereof. The magainin peptides preferably include the following basic peptide structure X₁₂:

Rl4 - Rl2 - R: i - Rl l - l l - R_l4a~ ( R₁5 ) n- f i a ^_ Rl ₄ ~ ~ wherein R_u is a hydrophobic amino acid; R₁₂ is a basic hydrophilic amino acid; R₁₃ is a hydrophobic, neutral hydrophilic, or basic hydrophilic amino acid; R₁₄ and R,_4a are hydrophobic or basic hydrophilic amino acids; R₁₅ is glutamic acid or aspartic acid; and n is 0 or 1. In a preferred embodiment, R₁₃ is a hydrophobic or neutral hydrophilic amino acid, R_14a is a hydrophobic amino acid, and R₁₅ is glutamic acid or aspartic acid.

Thus, for example, a magainin peptide may include the following structure:

-Y₁₂-X₁₂- where X₁₂ is the hereinabove described basic peptide structure, and Y₁₂ is ( i ) R.2

where R_u, R₁₂, R₁₄, and R_14a are as previously defined.

A magainin peptide may also have the following structure:

-X₁₂-Z₁₂- wherein X₁₂ is as previously defined and Z₁₂ is:

(i) R₁₆, where R₁₆ is a basic hydrophilic amino acid or asparagine or glutamine; or

(ii) R,₆-R , where R₁ is a neutral hydrophilic amino acid, a hydrophobic amino acid, or a basic hydrophilic amino acid. Preferably, R₁₇ is a basic hydrophilic amino acid.

A magainin peptide may also have the following structure:

(^12) a-^12~ ( Z12) b where X₁₂, Y₁₂, and Z₁₂ are as previously defined, a is 0 or 1, and b is 0 or 1.

As representative examples of such peptides, the following may be mentioned:

I Gly-Ile-Gly-Lys-Phe-Leu-Lys-Lys-Ala-Lys-Lys-Phe-Gly-Lys- Ala-Phe-Val-Lys-Ile-Leu-Lys-Lys

(SEQ ID NO: 154) (OH) or (NH₂)

II Gly-Ile-Gly-Lys-Phe-Leu-Lys-Lys-Ala-Lys-Lys-Phe-Gly-Lys- Ala-Phe-Val-Lys-Ile-Met-Lys-Lys

(SEQ ID NO: 155) (OH) or (NH₂) The magainin peptides may also include the following basic peptide structure X₁₃ :

Rι₄-R₁₁-Rι_4a-Rι₂-Rιι- ιι-Ri2~Ri3-Rιι^_Rι₄- i2~Rπ~Rιι-Ri2~~ , wherein R_u, R₁₂ , R₁₃ , R₁₄ , and R_14a are amino acids as hereinabove described .

The magainin peptide may also include the following structure : -X₁₃- Z₁₃- , wherein X₁₃ is the hereinabove described basic peptide s tructure and Z ₁₃ is

( Rll ) n~ ( ll ) n~ ( ll ) n~ ( l a ) n~ ( R15 ) n~ ( R.4a ) n~ ( l4 ) n~ ( .6 ) n ~ ( R.7 ) n 1 wherein R_u, R₁₄, R_14a, R_15, R_;6, and R₁₇ are as hereinabove described, and n is 0 or 1, and each n may be the same or different .

The magainin peptides generally include at least fourteen amino acids and may include up to forty amino acids . A magainin peptide preferably has 22 or 23 amino acids. Accordingly, the hereinabove described basic peptide structures of a magainin peptide may include additional amino acids at the amino end or at the carboxyl end, or at both ends.

As representative examples of such magainin peptides, there may be mentioned peptides having the following primary sequences as given in the accompanying sequence listing, as well as appropriate analogues and derivatives thereof:

(a) (SEQ ID NO: 6) (OH) or (NH₂)

(Magainin I)

(b) (SEQ ID N0:7) (OH) or (NH₂)

(Magainin II) ( c ) ( SEQ ID NO : 8 ) ( OH ) or (NH₂ )

(Magainin III) The following are examples of peptide derivatives or analogs of the basic structure:

(d) (SEQ ID NO: 9) (OH) or (NH₂)

(e) (SEQ ID NO:10) (OH) or (NH₂)

(f) (SEQ ID N0:11) (OH) or (NH₂)

Magainin peptides are described in Proc. Na tl . Acad Sci . Vol. 84 pp. 5449-53 (Aug. 87), which article is entirely incorporated herein by reference. The term "magainin peptides" as used herein refers to the basic magainin structure as well as derivatives and analogs thereof, including, but not limited to, the representative derivatives or analogs.

In accordance with a further embodiment, X may be a PGLa peptide or an XPF peptide. A PGLa peptide is either PGLa or an analogue or derivative thereof. The PGLa peptides preferably include the following basic peptide structure X₁₄ :

RJJ^—R;τ^~R^ —R^—R_;4 ^_Rι₄ ^_R;;—R^j—R₁₄ ^_Rι₂ ^_Rn-R'_ —R-_2^~"R:ι^— ι;^—R;-R12 / where R_n, R₁₂, R₁₄, and R₁₇ are as previously defined.

The PGLa peptides generally include at least seventeen amino acids and may include as many as forty amino acids. Accordingly, the hereinabove described basic peptide structure for a PGLa peptide may include additional amino acids at the amino end or at the carboxyl end or at both the amino and carboxyl ends .

Thus, for example, a PGLa peptide may have the following structure : -Y₁₄ -X₁₄ - where X₁₄ is as previously defined and

(i) Ru; or

where R_n and R₁₄ are as previously defined. For example, a PGLa peptide may also have the following structure :

-X₁₄-Z₁₄- where X₁₄ is as previously defined; and Z₁₄ is: (i) Rn; or

where R_u is as previously defined. A PGLa peptide may also have the following structure:

where X₁₄, Y₁₄, and Z₁₄ are as previously defined, a is 0 or

An X?F peptide is either XPF or an analogue or derivative thereof. The XPF peptides preferably include the following basic peptide structure X₁₆: u- i7 ^— i2- ιι- i -Riθ ^— n- Ru ^— Ri4 - i2^_ Ru- ιι- ι:- u~ ~Ru -R₁₂- ( R₁₅) _π-Ru~ - ' wherein R_:ι, R₁₂, R₁₄, R₁₅, and R₁₇ are as previously defined; R_lθ is glutamine, asparagine, a basic hydrophilic amino acid, or a hydrophobic amino acid; and n is 0 or 1.

The XPF peptides generally include at least nineteen amino acids and may include up to forty ammo acids. Accordingly, the hereinabove described basic peptide structure of XPF may include additional ammo acids at the amino end, or at the carboxyl end, or at both the amino and carboxyl ends .

Thus, for example, an XPF peptide may include the following structure :

where X₁₆ is as previously defined and Y₁₆ is (i) Ru, or

where R_u and R₁₄ are as previously defined. An XPF peptide may include the following structure:

where X₁₆ is as previously defined and Z₁₆ is: (i) R__; ⁽ii⁾ R_ι-R_„; (iii) R_n-R₁₈-Prolιne; or

(iv) R_u-R_ls-Prolιne-R_i2, wherein R , R₁₂, and R₁₈ are as previously defined.

An XPF peptide may also have the following structure:

where X₁₆, Y₁₆, and Z₁₆ are as previously defined, a is 0 or

Preferred are XPF or PGLa peptides, which are characterized by the following primary amino acid sequences, as given in the accompanying sequence listing:

PGLa : (SEQ ID NO: 12) (NH₂)

XPF : (SEQ ID NO:13) A review of XPF and PGLa can be found in Hoffman et al, EMBO J. , 2:711-714, 1983; Andreu, et al, J. Biochem., 149:531- 535, 1985; Gibson, et al J. Biol . Chem . , 261:5341-5349, 1986; and Giovannini, et al, Biochem. J., 243:113-120, 1987. These articles each are entirely incorporated herein by reference.

In accordance with yet another embodiment, X is a CPF peptide or an appropriate analogue or derivative thereof.

CPF peptides, as well as analogues and derivatives thereof, are herein sometimes referred to collectively as CPF peptides.

The CPF peptide may be one which includes the following basic peptide structure X₂₀:

R₂₁-R2i- ₂2-R22-R21-R21- 23~R21-R21^_R21-R23^_R21-R21-R2 -R25^_ 21 / wherein R₂₁ is a hydrophobic amino acid;

R₂₂ is a hydrophobic amino acid or a basic hydrophilic amino acid;

R₂₃ is a basic hydrophilic amino acid;

R₂₄ is a hydrophobic or neutral hydrophilic amino acid; and

R₂₅ is a basic or neutral hydrophilic amino acid.

The hereinabove basic structure is hereinafter symbolically indicated as X₂₀.

The hydrophobic amino acids are Ala, Cys, Phe, Gly, lie, Leu, Met, Val, Trp, Tyr, norleucine (Nle) , norvaline (Nva) , and cyclohexylalanine (Cha) .

The neutral hydrophilic amino acids are Asn, Gin, Ser, Thr, and homoserine (Hse) . The basic hydrophilic amino acids are Lys, Arg, His, Orn, homoarginine (Har), 2, 4-diaminobutyric acid (Dbu), and p-aminophenylal

The CPF peptide may include only the hereinabove noted amino acids or may include additional amino acids at the amino and/or carboxyl ends or both the amino and carboxyl ends . In general, the peptide does not include more than 40 amino acids.

The CPF peptides including the above basic structure preferably have from 1 to 4 additional amino acids at the amino end.

Accordingly, such preferred peptides may be represented by the structural formula: 0-^20^— wherein X₂₀ is the hereinabove described basic peptide structure and Y₂₀ is

⁽i⁾ ₂₅-

(iv) :₂~R2:- 22~ 25'' ^or preferably

(v) Glycine - 2i^~ 22~ 25> wherein R₂₁, R₂₂, and R₂₅ are as previously defined.

The carboxyl end of the basic peptide structure may also have additional amino acids which may range from 1 to 13 additional amino acids.

In a preferred embodiment, the basic structure may have from 1 to 7 additional amino acids at the carboxyl end, which may be represented as follows: -X₂₀-Z₂₀, wherein

X₂₀ is the hereinabove defined basic peptide structure and Z₂₀ is

( V ) R21 ~R21 ~R2 ~ R2 -R26

(vi) R₂₁-R₂₁-R₂₄-R₂₄-R₂₆-Gln; or

(vii) R₂₁-R₂₁-R₂,,-R₂₄-R₂₆-Gln-Gln, wherein R₂₁ and R₂₄ are as previously defined, and R₂₆ is proline or a hydrophobic ammo acid.

Preferred peptides may be represented by the following structural formula

( ^2θ) a-^2C- ( Z₂o) b wherein X₂₀, Y₂₀ and Z_2C are as previously defined, a is 0 or 1 , and b is 0 or 1.

Representative examples of CPF peptides which may be employed, some of which have been described m the literature, include the following sequences as given in the accompanying sequence listing:

(SEQ ID NO:14)

(SEQ ID NO:15)

(SEQ ID NO:16)

(SEQ ID NO:17)

(SEQ ID NO:18)

(SEQ ID NO:19) (SEQ ID NO:20) (SEQ ID NO:21) (SEQ ID N0:22) (SEQ ID N0:23) (SEQ ID NO:24) (SEQ ID N0:25) (SEQ ID NO:26)

A review of the CPF peptides can be found in Richter, K., Egger, R., and Kreil (1986) J. Biol. Chem., 261, 3676-3680; Wakabayashi, T., Kato, H., and Tachibaba, S. (1985) Nucleic Acids Research, 13, 1817-1828; and Gibson, B.W., Poulter, L., Williams, D.H., and Maggio, J.E. (1986) J. Biol. Chem., 261, 5341-5349. These articles each are entirely incorporated herein by reference.

In accordance with yet another embodiment, X is a peptide which includes one of the following basic structures X₃₁ through X₃₇ wherein:

Λ₃j S ^— I K₃ι — R₃₂ — Rτ₂- R -j 3 R₃^ — 32 ^— R32 _J ^— r. ' X₃₂ is — R₃ — R₃₂ — R₃₃ — R₃ι — R₃₂ — R₃₂ — R_3j J — _n;

X33 i^S ~ [R32-R33-R31~R32- 32-R31~R32] ~n'^* ^X34 ^{S -} [R33~ 31~R32- 32- 31~R32~R32] ~n'

^35 i^{s _} [ 31~R32~R32- 31~R32~ 32-R33] ~n'

^36 i^s ~ [R32- 32^""R3l^"" 32-R32^_R33-R3l] ~n' ^anC^

X₃₇ IS - [ 32-R31- 32- 32~R33^_R31~ 32J ~n' wherein R₃, is a basic hydrophilic amino acid, R₃₂ is a hydrophobic amino acid, R₃₃ is a neutral hydrophilic, basic hydrophilic, or hydrophobic amino acid, and n is from 1 to 5. The basic hydrophilic amino acids may be selected from the class consisting of Lys, Arg, His, Orn, homoarginine (Har), 2,4- diaminobutyric acid (Dbu) , and p-aminophenylalanine.

The hydrophobic amino acids may be selected from the class consisting of Ala, Cys, Phe, Gly, He, Leu, Met, Pro, Val, Trp and Tyr, norleucine (Nle) , norvaline (Nva), and cyclohexylalanine (Cha) .

The neutral hydrophilic amino acids may be selected from the class consisting of Asn, Gin, Ser, Thr, and homoserine (Hse) .

In accordance with one embodiment, when the peptide includes the structure X₃₁, the peptide may include the following structure :

Y₃i^_X ₃i/ wherein X₃₁ is as hereinabove described, and Y₃₁ is:

( i ) R₃₂ ;

( i v ) R₃₃ ^_ R₃ j — R₃₂ — ₃₂ ;

( V ) 32- 33~ 31 - 32 ^— 32 ' ^<~^>^-

(vi) R₃₂~ ₃₂~R33~R3i-R32~ 3:> wherein R₃₁, R_3:, and R₃₃ are as hereinabove described.

In accordance with another embodiment, when the peptide includes the structure X₃₁, the peptide may include the following structure :

X₃₁-Z₃₁, wherein X₃₁ is as hereinabove described, and Z₃₁ is:

(i) R₃_;

(V) 31- 32""R32-R33-R31' OT

⁽vi) R3i^~R32~R32^~ 33~ 3i^~ 32, wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

In accordance with yet another embodiment, the peptide may include the following structure:

(^γ3i) _a~ 3i~ (Z₃ι)_b, wherein Y₃₁ and Z₃₁ are as previously defined, a is 0 or 1, and b is 0 or 1.

When the peptide includes the structure X₃₂, the peptide may include the following structure:

Y₃₂-X₃₂, wherein X₃₂ is as hereinabove described, and Y₃₂ is:

(i) R₃₁;

(V) 33 ^— Rsi- 32~ R32 ^— 31 ' O^

(vi) R₃,-R₃₃-R₃_-R _:-R₃₂-R₃i, wherein R₃_, R₃₂, and R₃₃ are as hereinabove described.

In another embodiment, when the peptide includes the structure X₃₂, the peptide may include the following structure:

X₃₂-Z₃₂, wherein X₃₂ is as hereinabove described, and Z₃₂ is:

⁽i⁾ R₃₂;

(V) R32~ 32^_R33-R31~R32; ^0r (vi) R3₂~R32~ 33~R3i~R32~ 3₂' wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

(Y₃₂) _a-X₃₂- (Z₃₂) _b, wherein Y₃₂ and Z₃₂ are as previously defined, a is 0 or 1, and b is 0 or 1.

In accordance with another embodiment, when the peptide includes the structure X₃₃, the peptide may include the following structure :

Y₃₃-X₃₃, wherein X₃₃ is as hereinabove described, ana Y_ is:

( i ) R₃₂ ;

(IV) 2~ 3 ~" 31 ^""R32 '

(v) 3i^— 32^** 32""R3i~ s2 or

(vi) R₃₃-R₃₁-R₃₂-R₃₂-R₃₁-R₃₂, wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

In accorαance witn another embodiment, when tne peptme includes the structure X₃₃, the peptide may include the following structure :

^X ₃₃ ^_z ₃₃f wherein X₃₃ is as hereinabove described, and Z_: is:

( i ) R₃₂ ;

(iV) 32~R 3~R31-R32''

(V) 32~R33^_ 31- 32- 32 ^0r (vi) R₃₂-R₃₃-R₃₁-R₃₂-R₃₂-R₃₁, wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

(Y₃₃) _a-X₃₃- (Z₃₃)_b, wherein X₃₃, Y₃₃, and Z₃₃ are as previously defined, a is 0 or 1, and b is 0 or 1.

In accordance with yet another embodiment, when the peptide includes the structure X₃₄, the peptide may include the following structure :

Y₃₄-X₃₄, wherein X₃₄ is as hereinabove described, and Y₃₄ is:

⁽i⁾ R₃₂;

(^V) R32- 32-R31-R32-R32 ^or

(vi) R3i-R32~R32~R₃i~R₃₂~R₃₂ wherein R₃₁ and R₃₂ are as hereinabove described.

In accordance with another embodiment, when the peptide includes the structure X₃₄, the peptide may include the following structure :

X₃₄-Z₃₄, wherein X₃₄ is as hereinabove described, and Z₃₄ is:

(i) R₃₃;

(^V) R33- 31~ 32- 32-R31' °^r (vi) ₃₃-R3i-R₃₂" ₃₂"R3i" ₃₂r wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

(Y₃₄)_a-X₃₄- (Z₃₄)_b, wherein X₃₄, Y₃₄, and Z₃₄ are as previously defined, a is 0 or 1, and b is 0 or 1.

In accordance with a further embodiment, when the peptide includes the structure X₃₅, the peptide may include the following structure :

Y₃₅-X₃₅, wherein X₃₅ is as hereinabove described, and Y₃₅ is:

(i) R₃₃;

(IV) R31^_ 31-R32~R32~R33;

(V) R32"^" R31^"" 32 ^— R 2~ 33'^' °^r

(vi) R₃₂~^R ₃₂~ ₃i- ₃₂~ ₃₂ ^~ ₃₃' wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

In accordance with another embodiment, when the peptide includes the structure X₃₅, the peptide may include the following structure:

X₃₅-Z₃₅, wherein X₃₅ is as hereinabove described, and Z₃₅ is:

(i) R_3i;

(V) R31~R32-R32~R31~R32 °^r (vi) 3i~R32^~R32- 3i^~R32~R3_2> wherein R₃₁ and R₃₂ are as hereinabove described.

(Y₃₅) _a-X₃₅- (Z₃₅) _b, wherein X₃₅, Y₃₅, and Z₃₅ are as previously defined, a is 0 or 1, and b is 0 or 1.

In accordance with a further embodiment, when the peptide includes the structure X₃₆, the peptide may include the following structure :

Y₃₆-X₃₆, wherein X₃₆ is as hereinabove described, and Y₃₆ is:

(i) R₃₁;

⁽iv⁾ R2^—R2""R33^—R31 ;

(V) R31-R32- 32-R33^_R31' °^r

(vi) R₂~ 3i^~R32-R32~R₃₃ ^_R₃i? wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

In accordance with another embodiment, when the peptide includes the structure X₃₆, the peptide may include the following structure :

X₃₆-Z₃₆, wherein X₃₆ is as hereinabove described, and Z₃₆ is:

(i) R₃₂;

( v ) R₃₂ — R₃ — R₃j — R₃₂ ^— R₃₂ ; or (vi) R32-^R32^~R3i- 3i-R32-R33, wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

(Y₃₆)_a-X₃₆- (Z₃₆)_b, wherein X₃₆, Y₃₆, and Z₃₆ are as previously defined, a is 0 or 1, and b is 0 or 1.

In accordance with one embodiment, when the peptide includes the structure X₃₇, the peptide may include the structure Y₃₇-X₃₇, wherein X₃₇ is as hereinabove described, and Y is:

⁽i) R₃₂;

(iii) R₃₃-R₃₁-R₃₂

(iv) R₃₂-R₃₃-R₃₁-R₃₂;

(V) R32~R32 ^— 33-R31 ^— R32 ' °^r

(v) R₃₁-R₃₂-R₃₂-R₃₃-R₃₁-R₃₂, wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described.

In accordance with a further embodiment, when the peptide includes the structure X₃₇, the peptide may include the following structure :

X₃₇-Z₃₇, wherein X₃₇ is as hereinabove described, and Z₃₇ is: (i) R₃₂;

(iii) R₃₂-R₃ι-R₃ ;

(V) R32""R31-R32^_ 32~R33' °^r

(vi) R₃₂~R₃i~ ₃₂~R₃₂~R₃₃~R₃i' wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described. In accordance with yet another embodiment, the peptide may include the following structure:

(Y₃₇) _a-X₃₇- (Z₃₇) _b, wherein X₃₇, Y₃₇, and Z₃₇ are as previously defined, a is 0 or 1, and b is 0 or 1.

In a preferred embodiment of the peptides according to formulae X₃₁ to X₃₇, n is 3, and most preferably the peptide is of one of the following structures as given in the accompanying sequence listing:

(Lys He Ala Gly Lys He Ala)₃ (SEQ ID NO:27).

(Lys He Ala Lys He Ala Gly) ₃ (SEQ ID NO:28).

(Lys He Ala Gly Lys He Gly)₃ (SEQ ID NO:29).

(Lys Leu Ala Gly Lys Leu Ala)₃ (SEQ ID NO:30).

(Lys Phe Ala Gly Lys Phe Ala)₃ (SEQ ID NO: 31).

(Lys Ala Leu Ser Lys Ala Leu) ₃ (SEQ ID NO:32).

(Lys Leu Leu Lys Ala Leu Gly) ₃ (SEQ ID NO:33).

(Lys Ala He Gly Lys Ala He)₃ (SEQ ID NO:34).

(Gly He Ala Lys He Ala Lys)₃ (SEQ ID NO:35).

(Lys He Ala Lys He Phe Gly) ₃ (SEQ ID NO:36).

(Gly He Ala Arg He Ala Lys)₃ (SEQ ID NO:37).

(Lys Phe Ala Arg He Ala Gly) ₃ (SEQ ID NO:38).

(Gly Phe Ala Lys He Ala Lys)₃ (SEQ ID NO:39).

(Lys He Ala Gly Orn He Ala)₃ (SEQ ID NO:40).

(Lys He Ala Arg He Ala Gly) ₃ (SEQ ID NO:41).

(Orn He Ala Gly Lys He Ala)₃ (SEQ ID NO: 42).

(Gly He Ala Arg He Phe Lys)₃ (SEQ ID NO:43).

(Lys Nle Ala Gly Lys Nle Ala)₃ (SEQ ID NO:44).

(Lys Nle Ala Gly Lys He Ala)₃ (SEQ ID NO:45). (Lys He Ala Gly Lys Nle Ala)₃ (SEQ ID NO:46).

(Lys Nva Ala Gly Lys Nva Ala)₃ (SEQ ID NO:47).

(Lys Nva Ala Gly Lys He Ala)₃ (SEQ ID NO:48).

(Lys Leu Leu Ser Lys Leu Gly) ₃ (SEQ ID NO:49) .

(Lys Leu Leu Ser Lys Phe Gly) ₃ (SEQ ID NO:50).

(Lys He Ala Gly Lys Nva Ala)₃ (SEQ ID NO:51) .

(His He Ala Gly His He Ala)₃ (SEQ ID NO:52).

(Ala Gly Lys He Ala Lys He)₃ (SEQ ID NO:53).

(He Ala Lys He Ala Gly Lys)₃ (SEQ ID NO:54).

(Lys He Ala Gly Arg He Ala)₃ (SEQ ID NO:55).

(Arg He Ala Gly Arg He Ala)₃ (SEQ ID NO:56).

(Lys Val Ala Gly Lys He Ala)₃ (SEQ ID NO:57).

(Lys He Ala Gly Lys Val Ala)₃ (SEQ ID NO:58).

(Ala Lys He Ala Gly Lys Ile)₃ (SEQ ID NO:59).

(Orn He Ala Gly Orn He Ala)₃ (SEQ ID NO: 60).

(Lys Phe Ala Gly Lys He Ala)₃ (SEQ ID NO: 61).

(Lys He Ala Gly Lys Phe Ala)₃ (SEQ ID NO:62).

(Lys Cha Ala Gly Lys He Ala)₃ (SEQ ID NO:63j.

(Lys Nle Ala Lys He Ala Gly) ₃ (SEQ ID NO:64).

(Arg He Ala Gly Lys He Ala) ₃ (SEQ ID NO: 65).

(Har He Ala Gly Har He Ala)₃ (SEQ ID NO:66). (Xaa He Ala Gly Lys He Ala) ₃ (SEQ ID NO:67). (Lys He Ala Gly Xaa He Ala)₃ (SEQ ID NO:68). In (SEQ ID NO:67) and (SEQ ID NO:68), Xaa is p-aminophenylalanine . In accordance with another embodiment, X is a peptide which includes the following basic structure X₄₀:

R31- 32^"R32-R33~R34^_ 32^""R32~R31~R32- 32~ 32^" 34-R32~ 32' wherein R₃₁, R₃₂, and R₃₃ are as hereinabove described, and R₃₄ is a basic hydrophilic or hydrophobic amino acid.

In accordance with one embodiment, the peptide may include the following structure:

Yo^~Xo' wherein X₄₀ is as hereinabove described, and Y₄₀ is: ( i ) R32 ;

(ill) R₃₄-R₃₂-R₃₂ (iv) R₃₃-R₃₄-R₃₂-R₃₂;

( ) R32- 33~R34- 32~R32

(VI) R32-R32~R 3~ 3 - 32-R32' °^r

(vii) R₃₁-R₃₂-R₃₂-R₃₃-R₃₄-R₃₂-R₃₂, wherein R₃₁, R₃₂, R₃₃, and R₃₄ are as hereinabove described.

In accordance with another embodiment, X is a peptide which includes the following structure:

X₄₀-Z.₇, wherein X₄₀ is as hereinabove described ana Z₄₀ is:

(i) R₃₁;

(ii) R31- 32''

(V) R31^_R32^_ 32~ 33^_R3

(vi) R₃₁ — R₃₂ ^_ R₃₂~ R₃₃ ^_ R₃₄— R₃₂ ; or

(vii) R₃i-R₃2^~R32~ 3"R3 ~ 2~R32/ wherein R₃₁, R_3:,

R₃₃, and R₃₄ are as hereinabove described. In accordance with yet another embodiment, the peptide may include the following structure:

(Y₄₀)_a-X₄₀- (Z₄₀)_b, wherein X₄₀, Y₄₀, and Z₄₀ are as previously defined, a is 0 or 1, and b is 0 or 1.

In a preferred embodiment, the peptide has the following structural formula as given in the accompanying sequence listing:

(SEQ ID NO: 69)

In another preferred embodiment, the peptide has the following structural formula as given in the accompanying sequence listing:

(SEQ ID NO: 70)

In accordance with a further embodiment, the peptide has one of the following structural formulae as given in the accompanying sequence listing:

(SEQ ID NO: 71)

(SEQ ID NO: 72)

(SEQ ID NO: 73)

(SEQ ID NO: 74)

(SEQ ID NO: 75)

(SEQ ID NO: 76)

(SEQ ID NO: 77)

(SEQ ID NO: 78)

(SEQ ID NO: 79)

(SEQ ID NO: 80)

(SEQ ID NO: 81)

(SEQ ID NO: 82) ( SEQ I D NO : 8 3 ) ( SEQ I D NO : 84 ) ( SEQ I D NO : 85 )

In accordance with another embodiment, X is a peptide which includes one of the following structural formulae: (i) - (Lys He Ala Lys Lys He Ala)_n-, (ii)- (Lys Phe Ala Lys Lys Phe Ala)_n-, and

(iii) - (Lys Phe Ala Lys Lys He Ala)_n -, wherein n is from 1 to 5. Preferably, n is 3, and the peptide has one of the following structural formulae:

(Lys He Ala Lys Lys He Ala)₃ (SEQ ID NO: 86)

(Lys Phe Ala Lys Lys Phe Ala)₃ (SEQ ID NO: 87)

(Lys Phe Ala Lys Lys He Ala)₃ (SEQ ID NO: 88)

In accordance with another embodiment, the X is a peptide which is selected from tne group consisting of tr.e following structural formulae as given in the accompanying sequence listing:

(SEQ ID NO: 89) (SEQ ID NO: 90) (SEQ ID NO: 91) (SEQ ID NO: 92)

In accordance with yet another embodiment, X is a cecropin or sarcotox n. The term "cecropin" includes the basic structure as well as analogues and derivatives thereof. The cecropins and analogues and derivatives thereof are described in Ann . Rev. Microbiol . , 1987, Vol. 41, pages 103-26, in particular page 108, and in Christensen, et al., PNAS, Vol. 85, pgs . 5072-76, which are hereby incorporated by reference.

The term "sarcotoxin" includes the basic materials as well as analogues and derivatives thereof. The sarcotoxins and analogues and derivatives thereof are described in Molecular Entomology, pages 369-78, in particular page 375, Alan R. Liss, Inc. (1987), which is hereby incorporated by reference.

In accordance with another embodiment, X is melittin or an analogue or derivative thereof. Melittin is an amphipathic peptide consisting of 26 amino acid residues, and is isolated from honeybee (Apis mellifera) venom. Habermann, et al., Hoppe-

Seyler ' s Zeitschrift Physiol . Chem . , Vol. 348, pgs. 37-50 (1987)

(which document is entirely incorporated herein by reference) .

Melittin has the following structural formula as represented by the three-letter amino acid code:

Gly He Gly Ala Val Leu Lys Val Leu Thr Thr Gly Leu Pro Ala Leu

5 10 15

He Ser Trp He Lys Arg Lys Arg Gin Gin 20 25

(SEQ ID NO: 93)

In another embodiment, X is an amphiphilic peptide which is a hybrid of a cecropin peptide and a melittin peptide or an analogue thereof. Such hybrid peptides are described in U.S.

Patent 5,714,467 which is herein incorporated by reference. An example of such a peptide is given below. I Lys-Ala-Lys-Leu-Phe-Ala-Lys-Ala-Gly-Ala-Gly-Ala-Val-Leu- Lys-Ala-Leu-Lys-Lys-Gly-Leu-Lys-Ala-Leu-Ile-Lys (SEQ ID NO: 156) (-OH or-NH₂) In another embodiment, X is an amphiphilic peptide which includes the following basic structure X₅₀:

R 1-R42~ 42-R4l^""R42^""R2^""R41- 4--R 2- 4l^"' 41 •

R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid.

In one embodiment, the peptide includes the basic structure Y_5D-X₅₀, wherein X₅₀ is as hereinabove described and Y₅₀ is :

(I) R«_;

(ii) R₄₂-R₄_; or

(iii) R₄₂-R₄₂-R₄₁, wherein R₄₁ and R₄₂ are as hereinabove described.

In one embodiment, R₄₁ is leucine. In another embodiment, R₄₂ is lysine. Representative examples of peptides in accordance with this aspect of the present invention include those having the following structures:

(SEQ ID NO: 94)

(SEQ ID NO: 95)

(SEQ ID NO: 96)

(SEQ ID NO: 97)

In accordance with another embodiment, X is an amphiphilic peptide which includes the following basic structure X₅₂: R₄2^—R₄ι-R42^—R2^— 4i^—R1"" 2^—R₄2^—R41""R42"" 2 wherein Rj is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid.

In one embodiment R₄₁ is leucine. In another embodiment, R₄₂ is lysine.

In one embodiment, the peptide includes the basic structure Y₅₂-X_52, wherein X₅₂ is as hereinabove described, and Y₅₂ is:

(I) R₄ ;

(II) R₄₁-R₄₂;

(iv) R 2-R41- 1-R 2; or

(v) ₄2~R ₂~ i~R i~ 42 wherein R₄₁ and R₄₂ are as hereinabove described .

In one embodiment , the peptide may have the following structure :

Lys Lys Leu Leu Lys Lys Leu Lys Lys Leu Leu Lys Lys Leu Arg Arg

5 10 15

(SEQ ID NO. : 98)

In another embodiment, the peptide includes the basic structure X₅₂-Z₅₂, wherein X₅₂ is as hereinabove described, and Z₅₂ is :

(I) R«_;

(iv) R1-R1- 42-R2; or (v) R i~^R4i^~R 2~R 2~R4i ' wherein R₄₁ and R₄₂ are as hereinabove described .

In one embodiment , the peptide may have the following structure :

Lys Leu Lys Lys Leu Leu Lys Lys Leu Lys Lys Leu Leu Lys Lys Leu

5 10 15

(SEQ ID NO: 99)

In another embodiment, the peptide may include the structure :

(Y₅₂) _a-X₅₂- (Z₅₂) _b, wherein X₅₂, Y₅₂, and Z₅₂ are as hereinabove described, a is 0 or 1, and b is 0 or 1.

In another embodiment, X is a biologically active amphiphilic peptide which includes the following basic structure X₅₄ : 41~R42^_R42-R 1- 4l"^~R42- 2-R41-R 2-R42-R41^_R 1^_R 2^~R42-R42- 43 wherein R₄₁ and R₄₂ are as hereinabove described, and R₄₃ is a neutral hydrophilic amino acid.

In one embodiment, the peptide may have the following structure:

(SEQ ID NO: 100)

In another embodiment, the peptide may have the following structure:

(SEQ ID NO: 101)

In another embodiment , X is a biologically active amphiphilic peptide which includes the following basic structure X₅₆ : R4i- 42~R2~R4i^~R i^~R2^~R42^~R4i- i-R42~R2~ 44f wherein R₄₁ and R₄₂ are as hereinabove described, and R₄₄ is a neutral hydrophilic amino acid or proline.

In one embodiment, the peptide may include the structure: X₅₆-Z₅₆, wherein X₅₆ is as hereinabove described, and Z₅₆ is: (I) -R₄₂;

(iv) -R₄₂-R₄₂-R₄₁-R₄₁;

(V) -R 2- 2-R 1- l^'"R 2'

( i ) -R₄ — R₄₂-R₄₁— R₄₁-R₄₂-R₄₂ ; or

(vii) - 42-R42-R41-R1-R42--R42- 1' wherein R₄₁ and R₄₂ are as hereinabove described.

In a preferred embodiment, the peptide may have one of the following structures:

(SEQ ID NO: 102) ; or

(SEQ ID NO: 103) .

In another embodiment, X is a biologically active amphiphilic peptide which includes the following basic structure X₅₈ :

R 1~R41~R42-R42~ 41- 42- 42~R 1~R 1-R 2-R 2^""R 1-R43' wherein R₄₁, R₄₂, and R₄₃ are as hereinabove described.

In one embodiment, the peptide includes the structure X₅₈~Z₅₈, wherein X₅₈ is as hereinabove described, and Z₅₈ is:

(ii) -R₄₁-R₄₅; (in) -R₁—R₅-R₄₅; (iv) -R₄₁-R₄₅-R₄₅-R₄₃;

(v) -R₄₁-R ₅-R₄₅-R₄₃-R₄₁;

(VI) ~ 41~ 5- 5-R43~R41~R43'

(VII) - 41^_ 5~R45~R 3~R41- 43-R43'

(vni) -R₄₁-R₄₅-R₄₅-R₄₃-R₄₁-R₄₃-R₄₃-R₄₅; or

(ix) -R₄₁-R₄₅-R₄₅-R₄₃-R₄₁-R₄₃-R₄₃-R₄₅-R₄₃, wherein R₄₁ and R₄₃ are as hereinabove described, and R₄₅ is proline.

In one embodiment, the peptide has the following structure :

(SEQ ID NO: 104) .

In another embodiment, X is a biologically active amphiphilic peptide which includes the following basic structure X₆₀ :

R41-R41-R 3-R42^_R 1-R 1^_ 1-R41-R 1-R 1-R 2- 41^_R41-R2-R42-R41~R41-R42~R 2-

R₄₁-, wherein R₄₁, R₄₂, and R₄₃ are as hereinabove described. In one embodiment, the peptide may have the following structure:

(SEQ ID NO: 105) .

In accordance with another embodiment, X is a peptide which includes the following basic structure X₆₂ :

-R₄₁-R₄₂-R₄₂-R₄₁-R₄₂-R₄₂-R₄₁-, wherein R₄₁ and R₄₂ are as hereinabove described.

In one embodiment, the peptide includes the following structure Y₆₂ - X₆₂, where X₆₂ is as hereinabove described, and Y₆₂ s:

(I⁾ -R₄_;

(ii) -R₄₂-R₄₁;

(iv) ~ 4_-R2~R42~R4i, wherein R₄₁ and R₄₂ are as hereinabove described.

Representative examples of such peptides include the following, the sequences of which are given in the accompanying sequence listing:

(SEQ ID NO: 106)

(SEQ ID NO: 107)

(SEQ ID NO: 108)

(SEQ ID NO: 109)

(SEQ ID NO: 110)

(SEQ ID NO: 111)

(SEQ ID NO: 141)

(SEQ ID NO: 142)

(SEQ ID NO: 143)

(SEQ ID NO: 144)

(SEQ ID NO: 145)

(SEQ ID NO: 146)

In one embodiment, the peptide includes the structure ^x ₆₂~^z ₆₂/ wherein X₆₂ is as hereinabove described, and Z₆₂ is:

(I) -R₄₁;

(ii) -R₄₁-R₄₂;

(iii) -R₄₁-R₄₂-R₄₂; or

( iv) ~ i^_ 42~R42~ i, where R₄₁ and R₄₂ are as hereinabove described . A representative example includes the following peptide having the structural formula given below and listed in the accompanying sequence listing:

(SEQ ID NO: 112)

In another embodiment, the peptide has the structure (^γ62>a~ ^x ₆₂~(^z ₆₂)_bf wherein X₆₂, Y₆₂, and Z₆₂ are as hereinabove described, a is 0 or 1, and b is 0 or 1.

Representative examples of such peptides include the following, the structures of which are given in the accompanying sequence listing:

(SEQ ID NO: 113)

(SEQ ID NO: 114)

(SEQ ID NO: 115)

(SEQ ID NO: 116)

In another embodiment , X is a peptide having the following structural formula :

( SEQ I D NO : 117 )

In another embodiment, X is a biologically active amphiphilic peptide including the following basic structure

-R₄₂-R₄2~R 2~ 41~R41^_R42-R2-R 1-' wherein R₄₁ and R₄₂ are as hereinabove described.

In one embodiment, the peptide may include the structure ^Y ₆~Xe₄, wherein X₆₄ is as hereinabove described, and Y₆₄ is:

(I) R₄₁; or

(ii) R₄₂- i, wherein R₄₁ and R₄₂ are as hereinabove described. In another embodiment, the peptide may include the structure X₆₄-Z₆₄, wherein X₆₄ is as hereinabove described, and Z₆₄ is:

⁽I⁾ R₄₂;

In yet another embodiment, the peptide has the structure:

(Y₆₄) _a-X₆₄- (Z₆₄) _b, wherein X₆₄, Y₆₄, and Z₆₄ are as hereinabove described, a is 0 or 1, and b is 0 or 1.

Representative examples of such peptides include the following :

(SEQ ID NO: 127)

(SEQ ID NO: 128)

(SEQ ID NO: 129)

In yet another embodiment, X is a biologically active amphipnilic peptide including the following basic structure ₆₆:

R I- 2"F 2^~ I- I-" 46- 42" 4I^~R2""^R42-R 1' wherein R₄₁ and R₄₂ are hereinabove described and R₄₆ is glutamic acid. A representative example of such a peptide is the following:

(SEQ ID NO: 130)

In yet another embodiment, X is a biologically active amphiphilic peptide including the following basic structure

^X68 ^:

-R₄₂-R₄₂- ₄₁-R₄i-R₄₂- 46-R4i-R42- 42-R i"- > wherein R₄₁ , R₄₂ , and R₄₆ are hereinabove described . In one embodiment, the peptide includes the following basic structure Y₆₈-X₆₈, wherein X₆₈ is as hereinabove described, and Y₆₈ is R₄₁ (defined above) .

Representative examples of such peptides include the following:

(SEQ ID NO: 131)

(SEQ ID NO: 132) .

In another embodiment , X is a biologically active amphiphili c peptide including the following basic structure X₇₀.

^— R₄ι— ₄₂ ^_ R₄₂ — R₄ι— R₄1- R ₂ ^~ 42^~ <ii^— 2 ^— 42- i ^— 41^~ ' n^βrein R₄₁ and R₄₂ are hereinabove described . A representative example of such a peptide has the following structure :

( SEQ I D NO : 133 ) .

In another embodiment, X is a biologically active amphiphilic peptide including the following basic structure X₇₂ :

-R₄₂-R₄₂-R₄₁-R₄₁-R₄₂-R₄₇-R₄ι-R₄₂-R42^~R4i-/ wherein R₄ ^, and R₄₂ are hereinabove described, and R.-. is aspartic acid. A representative example of such a peptide has the following structure :

(SEQ ID NO: 134) .

In yet another embodiment, X is a biologically active amphiphilic peptide having the following structure:

(SEQ ID NO: 135) .

In yet another embodiment, X is a biologically active amphiphilic peptide including the following structure X₇₄ : R2-R1-R42-R41- 1-R42-R42-R41-R6-R2-R1/ wherein R₄₁, R₄₂, and R₄₆ are hereinabove described. A representative example of such a peptide has the following structure:

(SEQ ID NO: 136) .

In another embodiment, X is a biologically active amphiphilic peptide including the following structure X₇₆:

-R₄₁-R₄₂-R₄₂-R₄₁-R₄₁-R₄₂-, wherein R₄₁ and R₄₂ are hereinabove described.

In another embodiment, the peptide includes the structure Y₇₆-X-,₆-, wherein X₇₆ is as hereinabove described, and Y- is:

(i) -R₄₂;

(iv) -R₄₁-R₄₁-R₄₂-R₄₂;

(v) - 42-R 1-R 1-R 2-R 2'^{' or}

(vi) -R₄₂-R₄₂-R₄₁-R₄₁-R₄₂-R₄₂, wherein R₄₁ and R₄₂ are as hereinabove described.

In another embodiment, the peptide includes the structure X-.₆-Z₇₆, wherein X-,₆ is as hereinabove described, and Z₁₆ is:

⁽i⁾ R₄₈ ^;

(ii) R₄₈-R₄₁; or

(iii) R₄₈-R₄₁-R₄₂, wherein R₄₁ and R₄₂ are as hereinabove described, and R₄₈ is a basic hydrophilic, neutral hydrophilic, or hydrophobic amino acid.

In yet another embodiment, the peptide has the following structural formula: (Y₇₆)_a-X₇₆- (Z₇₆)_b, wherein X₇₆, Y₇₆, and Z₆ are as hereinabove described, a is 0 or 1, and b is 0 or 1.

Representative examples of such peptides include the following:

(SEQ ID NO: 137)

(SEQ ID NO: 138)

(SEQ ID NO: 139) .

In yet another embodiment, X is a biologically active amphiphilic peptide including the following structural formula X₇₈ :

-R₄₁-R₄₂-R₄₁-R₄₁-R₄₂-R₄₂-R₄₁-R₄₂-R₄₂-R₄₁, wherein R₄₁ and R₄₂ are as hereinabove described. A representative example of such a peptide has the following structure:

(SEQ ID NO: 140) .

In another embodiment , X has the following structure :

( SEQ ID NO : 149) .

In another embodiment, X is a biologically active amphiphilic peptide including the following structural formula

^X80^:

-R41- 2-R42-R41-R1- 2-R46-R41-R41-R42-R41-/ wherein R₄₁, R₄₂, and R₄₆ are as hereinabove described. A representative example of such a peptide has the following structure:

(SEQ ID NO: 151) .

In accordance with yet another embodiment, X is an ion channel-forming peptide or protein.

Ion channel-forming proteins or peptides which may be employed include defensins, also known as human neutrophil anti-microbial peptides (HNP) , major basic protein (MBP) of eosinophils, bactericidal permeability-increasing protein (BPI), and a pore-forming cytotoxin called variously perforin, cytolysin, or pore-forming protein. Defensins are described in Selsted, et al., J. Clin . Invest . , Vol. 76, pgs. 1436-1439 (1985). MBP proteins are described in Wasmoen, et al . , J. Biol . Chem . , Vol. 263, pgs. 12559-12563 (1988). BPI proteins are described in Ooi, et al., J. Biol . Chem . , Vol. 262, pgs. 14891-14894 (1987). Perforin is described in Henkart, et al . , J. Exp . Med. , 160: 75 (1984), and in Podack, et al., J. Exp . Med. , 160:695 (1984). The above articles each are entirely incorporated herein by reference.

The term "ion channel-forming proteins" includes the basic structures of the ion channel-forming proteins as well as analogues and derivatives.

In accordance with yet another embodiment, each of the amino acid residues of the peptides or proteins may be a D- amino acid or glycine. Although the scope of this particular embodiment is not to be limited to any theoretical reasoning, it is believed that the above-mentioned peptides or proteins, when consisting entirely of D-amino acid or glycine residues, may have increased resistance to proteolytic enzymes while retaining their activity. Such peptides thus may be administered orally. Also, in accordance with another embodiment, all of the amino acid residues may be D-amino acid or glycine residues, or L-amino acid or glycine residues. It is also to be understood that the peptides or proteins may be administered in combination with one another.

In accordance with another embodiment, the N-terminal substituted peptides or proteins of the present invention may be employed in combination with an ion having pharmacological properties for the purposes hereinabove described.

An ion having pharmacological properties is one which, when introduced into a target cell, virus, or virally-mfected cell, inhibits and/or prevents and/or destroys the growth of the target cell, virus, or virally-infected cell.

Such an ion having pharmacological properties is one which, in the absence of an ion channel forming peptide, is unable to cross a natural or synthetic lipid membrane, in particular a cell or virus membrane, m sufficient amounts to affect a cell or virus adversely.

The peptide or protein and on having pharmacological properties may be administereα as a single composition or m separate compositions, and the single or separate compositions may include additional materials, actives, and/or inactives, in addition to the peptide or protein and ion having pharmacological properties. As representative examples of ions having pharmacological properties which may be employed, there may be mentioned fluoride, peroxide, bicarbonate, silver, zinc, mercury, arsenic, copper, platinum, antimony, gold, thallium, nickel, selenium, bismuth, and cadmium ions.

The peptide or protein and the ion having pharmacological properties, whether administered or prepared in a single composition or in separate compositions, are employed in amounts effective to inhibit and/or prevent and/or destroy the growth of the target cell, virus, or virally-mfected cell. In effect, the ion potentiates the action of the peptide, i.e., the amount of ion is effective to reduce the maximum effective concentration of the peptide or protein for inhibiting growth of a target cell, virus, or virally-mfected cell.

The ion having pharmacological properties, when used topically, is generally employed in a concentration of from 0.05% to 2.0%. When used systemically, the ion is generally employed in an amount of from 1 to 10 mg . per kg. of host weight. Peptide or protein dosages may be within the ranges hereinabove described.

It is also to be understood that the peptide or protein and ion having pharmacological properties, may be delivered or administereα m different forms. For example, the ion may be administereα orally, while the peptide may be administered by IV or IP.

As representative examples of administering the peptide or protein and ion for topical or local administration, the peptide could be administered in an amount of up to about 1% weight to weight and the ion delivered in an amount of about 50mM (about 0.1%). Alternatively, the ion, in the form of a salt such as sodium fluoride, could be administered orally in conjunction with systemic administration of the peptide or protein. For example, the peptide or protein may be administered IV or IP to achieve a serum dose of 100 icrograms per milliliter (10 milligrams per kilogram) in conjunction with an oral dose of ion, in particular, sodium fluoride, of 10 meq per kilogram.

In accordance with another embodiment, the peptides or proteins of the present invention may be administered to a host in combination with an antibiotic selected from the class consisting of bacitracins, gramacidin, polymyxin, vancomycm, teichoplanm, aminoglycosides, hydrophobic antibiotics, penicillin, monobactams, or derivatives or analogues tnereof.

The bacitracins, gramacidin, polymyxin, vancomycm, teichoplanm, and derivatives and analogues thereof, are a group of polypeptide antibiotics. A preferred bacitrac is bacitracin A.

Aminoglycoside antibiotics include tobramycm, kanamycin, amikac , the gentamicine (e.g., gentamicm C_{ϊ f} gentamicm C₂, gentamicin C_la) , netilmicin, and derivatives and analogues thereof. The preferred aminoglycosides are tobramycm and the gentamic s. The aminoglycosides, and the bacitracins hereinabove described, tend to be hydrophilic and water- soluble .

Penicillins which may be employed include, but are not limited to, benzyl penicillin, ampicillin, methicillin (dimethoxyphenyl penicillin) , ticaricillin, penicillin V (phenoxymethyl penicillin) , oxacillin, cloxacillin, dicloxacillin, flucloxacillin, amoxicillin, and amidinocillin. Preferred penicillins which may be employed are benzyl penicillin and ampicillin. A preferred monobactam which may be employed is aztreonam.

As representative examples of hydrophobic antibiotics which may be used in the present invention, there may be mentioned macrolides, such as erythromycin, roxythromycin, clarithromycm, etc.; 9-N-alkyl derivatives of erythromycin; midecamycm acetate; azithromycm; flurithromycin; πfabutm; rokitamycin; a 6-0-methyl erythromycin A known as TE-031

(Taisho) ; rifapentine; benzypiperaz yl πfamycins such as CGP-7040, CGP-5909, CGP-279353 (Ciba-Geigy) ; an erythromycin A derivative with a cyclic carbamate fused to the C_n/C₁₂ position of a macrolide ring known as A-62514 (Abbott) ; AC-7230 (Toyo Jozo) ; benzoxazmorifamycin; difficidm; dirithromycm; a 3-N- piperdmomethylzaino methyl πfamycin SV known as FCE-22250

(Farmitalia) ; M-119-a (Kinn Brewery); a 6-0-methyl-l-4"-0- carbamoyl erythromycin known as A-63075 (Abbott); 3- formylπfamycm SV-hydrazones with diazabicycloalkyl side chains, such as CGP-27557 and CGP-2986 (Ciba-Geigy) ; and 16- membered macrolides having a 3-0-alpha-L-cladmosyl moiety, such as 3-0-alpha-L-cladmosyldeepoxy rosaramicm; tylosins and acyl demycmosyl tylosins.

In addition to the macrolides hereinabove described, rifamycin, carbenicilllin, and nafcillin may be employed as well .

Other antibiotics which may be used (whether or not hydrophobic) are antibiotics which are 50-S ribosome inhibitors such as lincomycin; clindamycm; and chloramphenicol; etc.; and antibiotics which have a large lipid like lactone ring, such as mystatin; pimaricin, etc.

The peptide or protein and antibiotic may be administered by direct administration to a target cell by systemic or topical administration to a host which includes the target cell, in order to prevent, destroy, or inhibit the growth of a target cell. Target cells whose growth may be prevented, inhibited, or destroyed by the administration of the peptides and antibiotic include Gram-positive and Gram-negative bacteria, as well as fungal cells.

The antibiotic, such as those hereinabove described, or derivatives or analogues thereof, when used topically, is generally employed in a concentration of about 0.1% to about 10% (by weight) . When used systemically, the antibiotic or derivative or analogue thereof is generally employed in an amount of from 1.25 mg. to about 45 mg. per kg. of host weight per day. Peptide or protein dosages may be those as hereinabove described.

As representative examples of administering the peptide or protein and antibiotic for topical or local administration, the peptide or protein could be administered in an amount of from 0.1% to about 10% weight to weight, and the antibiotic is delivered in an amount of from about 0.1% to about 10% weight to weight.

In accordance with another embodiment, the peptides or proteins of the present invention may be administered in combination with an anti-parasitic agent or an anti-fungal agent .

Anti-parasitic agents which may be employed include, but are not limited to, anti-protozoan agents. Examples of specific anti-parasitic agents which may be employed include, but are not limited to, pentamidine lsethionate, and propamidine lsethionate (Brolene) .

Anti-fungal agents which may be employed include, but are not limited to, ketoconazole . It is also to be understooα that certain anti-parasitic agents may also have anti-fungal activity, and that anti-fungal agents may have anti-parasitic activity .

In accordance with another embodiment, the peptides or proteins of the present invention may be administered in combination with an antibiotic which inhibits DNA gyrase, which is an enzyme involved in the formation of bonds between individual coiling strands of replicating bacterial DNA. Thus, DNA gyrase is necessary for tr.e normal replication of bacterial DNA, and, therefore, antibiotics which inhibit DNA gyrase inhibit the normal replication of bacterial DNA.

Examples of antibiotics which inhibit DNA gyrase include nalidixic acid, oxolinic acid, cinoxacin, and qumolone antibiotics which include ciprofloxacin, norfloxacin, ofloxacin, enoxacin, pefloxacin, lomefloxacin, fleroxacin, tosulfoxacin, temafloxac , and rufloxacin. BRIEF DESCRIPTION OF THE DRAWINGS

The invention will be more fully understood when considered in view of the specific examples that follow and the attached drawing, wherein:

Figure 1 is a graphical comparison of the maximum tolerated dose of Compound 843 and its methane sulfonate derivative, Compound 1324 (see Example 8, Table VII).

Figure 2 is a survival curve for A-549 human lung carcinoma cells treated with MSI-78 (SEQ ID NO: 154-NH,) and MSI-1858(SEQ ID NO: 154-NH₂ methane sulfonate).

Figure 3 is a survival curve for A-549 human lung carcinoma cells treated with MSI-344(SEQ ID NO: 154-OH) and MSI-1857(SEQ ID NO: 154-OH methane sulfonate).

Figure 4 is a survival curve for MDA-435 human breast carcinoma cells treated with MSI-78 (SEQ ID NO: 154-NH_:) and MSI-1858(SEQ ID NO: 154-NH₂ methane sulfonate).

Figure 5 is a survival curve for MDA-435 human breast carcinoma ceils treated with MSI-344(SEQ ID NO: 154-OH) and MSI-1857(SEQ ID NO: 154-OH methane sulfonate).

Figure 6 is a survival curve for K-562 human chronic myelogenous leukemia cells treated with MSI-78 (SEQ ID NO: 154- NH₂) and MSI-1858(SEQ ID NO: 154-NH₂ methane sulfonate).

Figure 7 is a survival curve for K-562 human chronic myelogenous leukemia cells treated with MSI-344(SEQ ID NO: 154-OH) and MSI-1857 (SEQ ID NO: 154-OH methane sulfonate). Figure 8 is a survival curve for WM 1617 human melanoma cells treated with MSI-78 (SEQ ID NO: 154-NH₂) and MSI-1858 (SEQ ID NO: 154-NH₂ methane sulfonate) .

Figure 9 is a survival curve for WM 1617 human melanoma cells treated with MSI-344(SEQ ID NO: 154-OH) and MSI-1857(SEQ ID NO: 154-OH methane sulfonate) .

Figure 10 is a survival curve for CD-I mice administered a single iv dose of MSI-344 (SEQ ID NO: 154-OH) or MSI-1857(SEQ ID NO: 154-OH methane sulfonate) .

Figure 11 is a survival curve for CD-I mice administered a single ip dose of MSI-344(SEQ ID NO: 154-OH) or MSI-1857(SEQ ID NO: 154-OH methane sulfonate) .

Figure 12 is a survival curve for SCID mice dosed twice a week with either MSI-344(SEQ ID NO: 154-OH) or MSI-1857 (SEQ ID NO: 154-OH methane sulfonate) .

Figure 13 is a body weight curve for SCID mice dosed three times a week with either MSI-344(SEQ ID NO: 154-OH) or MSI-1857(SEQ ID NO: 154-OH methane sulfonate).

Figure 14 is a body weight curve for SCID mice dosed twice a week with either MSI-344 (SEQ ID NO: 154-OH) or MSI- 1857 (SEQ ID NO: 154-OH methane sulfonate).

Figure 15 is a standard curve relating antibacterial activity (zone diameter) to the concentration of MSI-1324 (OCT- SEQ ID NO: 143-NH₂ methane sulfonate).

Figure 16 shows the concentration of MSI-1324 ) OCT-SEQ ID NO: 143-NH₂ methane sulfonate) in plasma after a single iv dose . DETAILED DESCRIPTION OF THE INVENTION

The present invention will be further described in the following specific examples. These examples should be construed as illustrating the invention and not as limiting the same.

EXAMPLE 1

Table I, which follows, indicates the Minimal Inhibitory Concentration (MIC) in μg/ml of various peptides against S . aureus strain ATCC 25923 (S), P. aeruginosa strain ATCC 27853 (P), E . coli ATCC strain 25922(E), and C. albicans (CA) . A "D" indicates that each ammo acid residue is a D-ammo acid residue or a glycine residue. The peptides are unsubstituted at the N-terminal; substituted with an acetyl group at the N- terminal, as indicated by Ac-; substituted with an octanoyl group at the N-terminal, as indicated by Oct-; substituted with spinogos e, as indicated by Sph-; substituted with a succ yl group, as indicated by Sue-; substituted with a hexanoyl group, as indicated by Hex-; substituted with a heptanoyl group, as indicated by Hep-; substituted with a valeryl group, as indicated by Val-; substituted with a myπstryl group, as indicated by Myr-; or substituted with an ibuprofyl group, as indicated by Ibu-.

The procedure for the anti-bacterial assay is based upon the guidelines of the National Committee for Clinical Laboratory Standards, Document M7-T2, Volume 8, No. 8, 1988, which document is entirely incorporated herein by reference. Stock solutions of peptides, with and without the appropriate substitutions, were prepared at a concentration of 512 μg/ml in sterile deiomzed distilled water and stored at - 70°C.

The stock peptide solution was diluted in serial dilutions (1:2) down the wells of a microtiter plate so that the final concentrations of peptides in the wells were 0.25, 0.50, 1, 2, 4, 8, 16, 32, 64, 128 and 256 μg/ml. 1-5 x 10⁵ CFUs/ml of either S . aureus ATCC 25923, E . coli ATCC 25922, P. aeruginosa ATCC 27853, or C. albicans, were added to the wells in full strength Mueller Hinton broth (BBL 11443) from a mid- log culture. The inoculum was standardized spectrophotometrically at 600 nm and was verified by colony counts. The plates were incubated for 16-20 hours at 37°C, and the minimal inhibitory concentration (MIC) for each peptide was determined. Minimal inhibitory concentration is defined as the lowest concentration of peptide which produces a clear well in the microtiter plate. The minimal inhibitory concentration of each of the peptides with and/or without the appropriate substitutions is given in Table I below.

Table I

Minimal Inhibitory Concentration (uσ/ml )

Peptide CA

Oct-(SEQ ID NO: 27)-NH₂ 2 4 2 16 Oct-(SEQ ID NO: 27) -OH 8 8 4 32 Ac- (SEQ ID NO: 27)-NH₂ 32 128 8 N/A (SEQ ID NO: 27)-NH₂ 8,16 64,128 8 N/A (SEQ ID NO: 27) -OH 128 128 8 N/A Sph-Suc-(SEQ ID NO: 27)-NH₂ 64 >256 32 N/A Sue- ((SEQ ID NO: 27) -NH, >256 >256 32 128 Ibu-(SEQ ID NO: 27)-NH₂ 2 4 8 128 (SEQ ID NO: 66) -NH, 4 32 32 64 Oct-(SEQ ID NO: 66)-NH₂ 4 16 8 256 (SEQ ID NO: 86) -OH 128 32 2 256 Oct- (SEQ ID NO: 86) -OH 8 4 2 128 Oct-(SEQ ID NO: 106)-NH₂ 128 32,64 128 64,128 Oct- (SEQ ID NO: 107) -NH, 128 256 >256 128 Oct- (SEQ ID NO: 108) -NH, 16 4 64 64 Oct- (SEQ ID NO: 109) -NH, 8 4 16 32 (SEQ ID NO: 110) -NH_. >256 32,64 64, 128 N/A Ac- (SEQ ID NO: 110) -NH, 256 8,16 32,64 N/A Oct- (SEQ ID NO: 110) -NH, 4 4 8 32 Oct-D-(SEQ ID NO: 110) -NH₂ 4 4 16 32 Hex- (SEQ ID NO: 110) -NH₂ 16 8 16 64 Hep- (SEQ ID NO: 110) -NH₂ 8 4 16 32 Val- (SEQ ID NO: 110) -NH₂ 64 8 32 32 Myr-(SEQ ID NO: 110) -NH₂ 16 16 16 >256 Oct- (SEQ ID NO: 111)-NH₂ 64 8 32 32 (SEQ ID NO: 113) -NH₂ 16,32 8,16 32 N/A Ac- (SEQ ID NO: 113) -NH₂ 32 64 64 N/A Oct- (SEQ ID NO: 113) -NH₂ 8 8 8 128 Oct- (SEQ ID NO: 118) -NH₂ >256 >256 >256 >256 Peptide CA

Oct- (SEQ ID NO 119) -NH₂ >256 >256 >256 >256 Oct- (SEQ ID NO 120) -NH₂ 64 128 256 64 Oct- (SEQ ID NO 121) -NH₂ 128 256 256 256 Oct- (SEQ ID NO 122) -NH₂ 32 32 64 64 Oct- (SEQ ID NO 123) -NH₂ 32 16 32 32 Oct- (SEQ ID NO 124) -NH₂ 128 64 256 128 Oct- (SEQ ID NO 125) -NH₂ 8 8 16 64 Oct- (SEQ ID NO 126) -NH₂ 8 8 8 64 Oct- (SEQ ID NO 127) -NH₂ >256 32 32 128 Oct- (SEQ ID NO 128) -NH₂ 128 64 32 32 Oct- (SEQ ID NO 129) -NH₂ 128 16 32 128 Oct- (SEQ ID NO 130) -NH₂ 4 4 4 8 Oct- (SEQ ID NO 131) -NH₂ 8 8 4 64 Oct- (SEQ ID NO 132) -NH₂ 32 8 8 64 Oct- (SEQ ID NO 133) -NH₂ 16 32 32 128 Oct- (SEQ ID NO 134) -NH₂ 64 8 16 64 Oct- (SEQ ID NO 135) -NH₂ 32 8 64 64 Oct- (SEQ ID NO 136) -NH, 256 64 256 256 Oct- (SEQ ID NO 137) -NH, 256 256 >256 256 Oct- (SEQ ID NO 138) -NH₂ 4 8 8 64 Oct- (SEQ ID NO 139) -NH₂ 16 32 16 128 Oct- (SEQ ID NO 140) -NH₂ 32 8 16 64 Oct- (SEQ ID NO 141) -NH₂ 4 4 8 32 Oct- (SEQ ID NO 142) -NH₂ 4 2 8 32 Oct- (SEQ ID NO 143) -NH₂ 16 2 16 16 Oct- (SEQ ID NO 144)-NH₂ 8 4 16 32 Oct- (SEQ ID NO 145) -NH₂ 4 8 16 64 Oct- (SEQ ID NO 146) -NH₂ 8 4 16 32 Oct- (SEQ ID NO 147) -NH₂ 32 32 32 128 Oct- (SEQ ID NO 148) -NH₂ 32 8 32 128 Peptide CA

(SEQ ID NO: 149) -NH₂ 256 32 32 64

Oct- (SEQ ID NO: 149) -NH₂ 64 16 32 126

Hex- (SEQ ID NO: 150) -NH₂ 16 128 32 128

Myr-(SEQ ID NO: 151) -NH₂ 64 128 64 >256

Oct- (SEQ ID NO: 153) -NH₂ 8 8 32 64

The above results indicate that when a biologically active peptide is substituted with a lipophilic moiety of the present invention, the peptide has increased biological activity against a variety of microorganisms.

Example 2

Stock cultures of P. gmgivalis, S . mutans, or A. viscosus were maintained on Brucella blood agar plates with hemin and vitamin K₄ (BBL, Cockeysville, MD) and were grown under anaerobic conditions (Coy Anaerobic Chamber, Ann Arbor, MI) with an atmosphere of 80% N,-10%H,-10%CO, at 37°C. Experimental cultures were grown up Brain heart infusion (BHI) broth (BBL, Cockeysville, MD) , plus hemin (2.5 mg/liter) (Sigma Chemical Co., St. Louis, IL) , plus vitamin K_γ (0.25 mg/liter) (Sigma Chemical Co., St. Louis, MO). For susceptibility testing, cultures were taken from overnight (24 hour) broth cultures and diluted in fresh BHI broth (plus hemin plus vitamin I to deliver 1 x 10⁶ colony-formmg units (CFUs)/ml m each microtiter test well.

Anti-microbial susceptibility tests were performed according to the guidelines of the National Committee for Clinical Laboratory Standards (NCCLS) (Document M11-T2, 1989, incorporated herein by reference) . Microtiter plates (Corning, Corning, NY) were filled aseptically with BHI broth (plus hemin plus vitamin K) to a volume of 100 μl by the use of a Beckman Biomek 1000 robotic instrument (Beckman Instruments, Palo Alto, CA) . Peptides were tested in duplicate lanes by adding manually 100 μl of a 1.024 mg/ml peptide solution in water (w/v) to the top wells of a microtiter plate lane. The peptide was diluted serially 1 : 2 by mixing and transferring 100 μl from the top well down to the bottom well in the lane by use of the Beckman Biomek 1000 (Beckman Instruments, Palo Alto, CA) . The last 100 μl from the bottom well was discarded. One hundred microtiters of the bacteria were added in BHI (plus hemin plus vitamin K_x ) to each test well to give final peptide dilutions from 0.25 μl/ml. The plates were incubated in the anaerobic chamber at 37°C for 24-48 hours. After incubation, the minimum inhibitory concentration (MIC) was determined as the lowest concentration of peptide which inhibits growth as determined by visual inspection and optical density when read on a Dynatech MR5000 microtiter plate reader at 630 nm (Dynatech Laboratories, Chantilly, VA) . The results are given in Table II below.

Table II

MIC (ul/ml)

P.σi naivalis (strain )

Peptide 381 A7A1-28 FAY-19M- -1 9-14K-1 450 S.mutans A. vis cos

(SEQ ID NO. 27) -NH₂ 128 16 64 8, 128 4 16 16 Oct- (SEQ ID NO. 27)-NH₂ 16 4 4 4 16 16 16 c

CD Oct- (SEQ ID NO. 27) -OH 2 1 2 2 1 16 32 (/>

H (SEQ ID NO. 66)-NH₂ 16 4 8 2 4 8 8

C H rn

U) Oct- (SEQ ID NO. 66)-NH₂ 4 8 2 2 2 32 16 I S m m (SEQ ID NO. 86) -NH₂ 8 2 8,128 8 4 4 16

H c (SEQ ID NO. 86) -OH 16 4 8 16 4 16 32 rn

JO Oct- (SEQ ID NO. 86) -OH 1 1 1 1 1 16 32

Example 3

CD-I male mice (average body weight, 22.8g) were inoculated with live E. coli strain 21915-1 (2.3 x 10⁵ CFU mouse) by injection intraperitoneally. Oct- (SEQ ID NO: 143) -NH₂ then was injected intravenously via the tail vein at 1 and 5 hours post-moculation. Control mice were inoculated and treated with 0.9% saline. Each different treatment group had 10 mice per group. All control mice died. Treatment doses of Oct- (SEQ ID NO: 143) -NH₂ were 1, 5, 10 and 20 mg/kg in toto, and resulted in 20%, 40%, 90% ana 90% survival at six days post-moculation, respectively.

Example 4

Oct- (SEQ ID NO: 143) -NH, was injected intravenously into male C57BL/6J mice (average body weight 20. Ig) approximately two minutes prior to mtrapeπtoneal injection of a solution of lipopolysaccharide (either 0.1 μg or 0.5 μg/mouse) from E . coll serotype C111:B4 and galactosamine (8 mg/mouse). Treatmert doses of Oct-(SEQ ID NO: 143)-NH, were 0, 5, 7.5, 10, 12.5 or 15 mg/kg (10 mice/group), and when administered prior to 0.5 μg lipopolysaccharide/mouse resulted in 10%, 0%, 30%, 0%, 50%, and 60% survival at five days post-lipopolysacchaπde administration, respectively. When these doses were administered prior to the administration of 0.1 μg lipopolysaccharide/mouse, the results were 40%, 90%, 100%, 100%, and 100% survival at five days post- lipopolysaccharide administration, respectively. Example 5

A stock solution (lOx) of 0.6 mM dye was prepared by adding 1.68 mg of (l-ethyl-2- (3- [1-ethylnaphthol (1, 2-d) -thιazolm-2- ylidene]-2-methylpropenyl) naphtho- (1,2-d) -thiazolium bromide (Signa E-7762) to 5 ml of 200 proof ethanol. 1 ml of this solution was added to 9 ml ethanol to give 0.06 mM of dye (60 μM dye) .

A stock solution of lipopolysacchaπde (LPS) from E . coli serotype 0111 :B4 was prepared at 1.5 mg/ml. 400 μl of this solution was mixed with 4.6 ml pyrogen free water to give a 120 μg/ml solution.

Row 1 and rows 3 through 12 of a microtiter plate were filled with 100 μl of pyrogen free water or with 10 mg/ml of bovme serum albumin. 200 μl of peptide then was added to row 2 of the microtiter plate at a concentration of 1 mg/ml. 200 μl of pyrogen free water was added to each of the control wells in two lanes (having dye and LPS but no peptide or having dye and no LPS and no peptide) . 100 μl then was serially diluted from row 2 through row 12 of the microtiter plate. 50 μl of PBS (pH 7.4) and 50 μl of the LPS solution then were added to row 1 of the plate (blank wells) . Equal volumes of the LPS solution, the dye, and PBS (pH 7.4 approx. 150 mM) were mixed to form a dye-buffer-LPS mixture having LPS at a final concentration of 40 μg/ml and dye at a final concentration of 20 μM. The dye-buffer LPS mixture then was incubated for 10 minutes at room temperature in the dark. 100 μl of the dye-LPS buffer mixture then was added to every well of the microtiter plate except to the blank wells and to the control lane that does not have LPS or peptide. The plate was incubated for 10 minutes at room temperature in the dark, and the absorbance at 460 nm and 510 nm was read. From these absorbances, the LPS50 value, which is the concentration in mg/ml of peptide necessary to inhibit the binding of 50% of the lipopolysaccharide to the dye, was calculated.

The above procedure was carried out for the peptides listed in Table III below and demonstrates that N-terminally modified antimicrobial peptides can also inhibit the binding of LPS to a hydrophobic dye.

Table III

Compound LPS 50 Oct- (SEQ ID NO: 106) -NH, 6. 80 Oct- (SEQ ID NO: 107) -NH, 15 .00 Oct- (SEQ ID NO: 109) -NH, 0. 60 Oct- (SEQ ID NO: 110) -NH, 0. 84 Oct-D(SEQ ID NO: 110) -NH, 0. 97 Oct- (SEQ ID NO: 1H)-NH₂ 1. 00 Oct- (SEQ ID NO: 121) -NH, 2C ).00 Oct- (SEQ ID NO: 123) -NH₂ 1. ,70 Oct- (SEQ ID NO: 137) -NH₂ 4. ,80 Oct- (SEQ ID NO: 138) -NH₂ 1. .00 Oct- (SEQ ID NO: 142) -NH₂ 0. .70 Oct- (SEQ ID NO: 143) -NH₂ 0. .90 Example 6

General Method for the Preparation of Sodium Methane Sulfonate Derivatives of N-Termmally Modified Peptides

The free base of an N-terminally modified peptide was generated by neutralizing the acetate or trifluoroacetate salt with saturated sodium carbonate solution. The precipitated peptide was isolated either by centrifugation or by filtration, followed by washing with water. A formaldehyde-sodium bisulfite complex was prepared by dissolving 5 gm of sodium bisulfite in a fixture of 75 ml of water and 4 ml of 35-40% formaldehyde with stirring. The solution was cooleα and ethanol added. The precipitate obtained was filtered, washed with water, and dried. The product was recrystallized from water-ethanol . The peptide free case was suspended in water and Formaldehyde-sodium bisulfite complex

(Aldπch #11, 270-4; Milwaukee, WI) (1.1-3.0 equivalents for each free ammo group) was added slowly while stirring the reaction mixture. After stirring for about 15-30 minutes, the solution was filtered and lyophilized.

Example 7

The m vitro anti-microbial activities of the methane sulfonate derivatives were determined according to the methods described in Examples 1 and 2. The activities against ATCC strains of S. aureus, E. coli , P. aeruginosa, and C. albicans, and the hemolysis of red blood cells were compared to the parent compound (Table IV) . The activities for Compound 843 (Oct-SEQ ID NO:143) methane sulfonate against clinical strains of P. aeruginosa isolated from cystic fibrosis patients were compared to the parent compound (Table V) . The activity for Compound 469 (Oct-SEQ ID NO: 27) methane sulfonate against P. gingival is was compared to the parent compound (Table VI) . These results indicate that the methane sulfonate analogues have anti-microbial activities comparable to the parent compounds.

TABLE IV

Anti-microbial Activity of Methane Sulfonate Derivatives Compared to Parent Compound

MIC (μg/ml) %Hemolysis

(500 μg/ml) Compound S . aureus E. col i P. aeruginosa C. albicans

ATCC 29213 ATCC 25922 ATCC 27853 ATCC 90028

OCT-SEQ ID NO: 143-NH₂ 8 64 2% sodium methane sulfonate derivative OCT-SEQ ID NO: 143-NH₂ 16 2 64 25% ω c

CD OCT-SEQ ID NO: 27-NH₂ 4 32 64 75% ϋ> sodium methane

H sulfonate derivative C H OCT-SEQ ID NO: 27-NH₂ 2 4 4-8 rn 64 100% m

SEQ ID NO: 154-NH₂ 32 32 32-64 m ND ND m sodium methane

H sulfonate derivative c SEQ ID NO: 154-NH₂ 16 32 16-32 ND ND m ro SEQ ID NO: 154-OH 128 32 256 ND ND σ> sodium methane sulfonate derivative

SEQ ID NO: 154-OH 128 16 ND ND

SEQ I D NO : 155-NH₂ 64 128 64 ND ND sodium methane sulfonate derivative

SEQ ID NO: 155-NH₂ 16 16 32 ND ND

TABLE V

Activity of Compound 843 (Oct-SEQ ID NO: 143) Methane Sulfonate Derivatives

Against Clinical Isolates of P. aeruginosa

MIC (μg/ml) Pseudomonas aeruginosa

Compound LS-31 LS-40 LS-43 ATCC 27853 ωc CO Parent 16 Compound 843 c -i

Hm Compound 1324 16 en !d (the methane x m sulfonate derivative m

H of Compound 843) c m to σ>

TABLE VI

Activity of Compound 469 (Oct-SEQ ID NO:27) and its Methane Sulfonate Analogue Against P. gingivalis

MIC (μg/ml) P. gingivalis ATCC 33277

Compound

Compound 1662 (the methane sulfonate of Compound 469)

Parent Compound 469 (Oct-(KIAGKIA) ₃-NH₂)

Example 8

Effect of Methane Sulfonate Addition on the Maximal Tolerated Dose of Compound 843 (Oct-SEQ ID NO: 143) in Mice

Summary:

Mice received single intravenous administrations of Compound 1324, the methane sulfonate analogue of Compound 843, and were monitored for survival for at least 4 days. There were no deaths at a dose of less than or equal to 180 mg/kg. This demonstrates that the chemical modification of Compound 843 to proαuce Compound 1324 results in a 9-fold increase in safety. Obiective :

To determine the maximal tolerated dose (MTD) ana estimate the lethal dose 50% (LD50) of Compound 1324 sodium when administered intravenously in a single-bolus in mice. Materials and Methods:

Animals: On arrival and study initiation, three groups

Thirty-seven male CD-I mice (Charles River Lab) had average body weights of 39, 28 and 28 gm, respectively.

Materials: Test article: Compound 1324 active moiety 47%

Vehicle: 0.9% Saline

Solution Prep: A 120 mg/ml of active Compound 1324

(active moiety corrected for) was made in saline. All concentrations from 5 mg/ml to 80 mg/ml were dilutions of the 120 mg/ml solution with saline. The highest concentration used in the intravenous administration was 20 mg/ml.

Protocol :

Mice were randomly assigned to one of ten groups (4 mice per group, except the highest dose group which only had one mouse) .

Mice were administered intravenously 10 ml/kg of either 0

(saline), 5, 6, 7, 8, 14, 16, 18, or 20 mg/ml solution for doses of 0, 50, 60, ^"O, 80, 140, 160, 180, 200 mg/ml. One mouse received 14.1 ml/kg of a 20 mg/ml solution for a dose of 282 mg/kg. Mice were monitored for survival for at least four days post-administration .

Results :

See the Survival Table, Table VII.

All mice that were intravenously administered Compound 1324 at doses up to and including 180 mg/kg survived. Three of four mice that received 200 mg/kg survived. One mouse that received 200 mg/kg and one mouse that received 282 mg/kg died.

TABLE VII

MTD = maximum tolerated dose (non-lethal)

LD50 = dose that was lethal to 50% of the animals

MTD i.v. = 1180 mg/kg LD50 i.v. = between 200 and 282 mg/kg

For comparison, Compound 843 (the parent compound of Compound 1324) has a significantly lower MTD of 20.0 mg/kg. The chemical modification of Compound 843 yields Compound 1324 and produces a 9-fold increase in safety (see Fig. 1) .

Route Dose No. of Number of Survivors on Day c (mg/kg) mice 0^a 1 2 3 4 5 6 7

CD U> H IV 0 4 4 4 4 4 4 4 SE SE

H

C 50 4 4 4 4 4 4 4 SE SE H m 60 4 4 4 4 4 4 4 SE SE en 70 4 4 4 4 4 4 4 SE SE x o? m 80 4 4 4 4 4 4 4 SE SE m 140 4 4 4 4 4 4 4 ND 4

160 4 4 4 4 4 4 4 ND 4 c 180 4 4 4 4 4 4 4 ND 4 r- m 200 4 ND ND 3 3 3 SE SE SE ιo 282 1 ND ND 0 0 0 SE SE SE

ND = survival count not done

SE = study ended (terminated)

"Survivor count on Day 0 (the day they were dosed) was 2 or 6.5 hrs post-administration.

Example 9

Alternate Method for the Preparation of Sodium Methane Sulfonate

Derivatives of Cationic Peptides

This method was used to prepare the sodium methane sulfonate derivatives of SEQ ID NOS: 154-156. The peptide salt (hydrochloride salt, acetate salt or trifluoroacetate salt) was taken into water and treated with an excess of 30% neutral formaldehyde solution (up to 12.5 equivalents for each am o group in the peptide) and an excess of IM sodium bicarbonate solution(up to 6.25 equivalents for each ammo group the peptide) . The precipitated peptide adduct of formaldehyde was separated either by centrifugation or by filtration, washed with water and dried. The formaldehyde adduct was suspended m water and an excess of sodium metabisulfite was added (up to 1.9 equivalents for each ammo group the peptide) to form the methane sulfornate derivative. The clear solution was filtered through a 0.2μm filter and lyophilyzed.

Elemental analysis, mass spectra and antimicrooial activities were determined or. these derivatives.

Example 10

In Vitro Anti-Tumor Activity of Peptide Methane Sulfonate Derivatives Compared to Underivatized Peptides

Cell Lines :

Human lung carcinoma cells, A-549 (ATCC), and human breast carcinoma cells, MDA-435 (from Sandoz), were grown in Ham's F12K medium (GIBCO-BRL) supplemented with 10% fetal bovine serum. Human chronic myelogenous leukemia cells, K-562 (ATCC) , were maintained in RPMI 1640 medium (GIBCO-BRL) supplemented with 10% fetal bovine serum. Human melanoma cell line, WM 1617 (from the Wistar

Institute), was maintained in 2% Tumor media.

Cytotoxicity assay:

Cytotoxicity assays were performed on the cell lines described above using CytoLite (Packard Instrument Company) following the manufacture's instruction. Briefly, 2xl0⁴ cells/well were seeded into blacκ, 96-well ViewPlates (Packard Instrument Company) in 100 ul/well growth medium. Serial dilutions of Magainin peptides were then added into the cells and tne plates incubated for 24 hours in a humidified 5% CO, atmosphere at 37°C. Following incubation, 25 μl/well of CytoLite activator solution was added followed by 125 μl/well of amplifier solution. Luminescence was measured on TopCount Microplate Scintillation and Luminescence counter (Packard Instrument Company) using a 1 second count time in SPC (single photon counting) mode at 25 °C . All assays were performed in triplicate. The peptides tested in this assay were MSI-78 (SEQ ID NO: 154-NH₂) , MSI-1858(SEQ ID NO: 154-NH₂ Methane

Sulfonate), MSI-344 (SEQ ID NO: 154-OH) and MSI-1857(SEQ ID NO: 154- OH Methane Sulfonate) . The results of these assays are shown in Figures 2-9 with the corresponding IC₅₀ values in Table VIII. In all cases the activity of the methane sulfonated peptide was as good or better than the parent peptide as indicated by both the survival curves and the IC₅₀ values .

Thymidine uptake assay:

2x10" cells/well are seeded into 96-well tissue culture plates in 100 μl/well growth medium and allowed to attach overnight in a humidified 5% C0₂ atmosphere at 37°C. Serial dilutions of Magainin peptides are then added into the cells and the plates are incubated for 18 hours. Following incubation, 0.2 μCi/well of [³H] -thymidine are added to the plates and further incubated for 6 hours at 37 °C . The cells are harvested, and the [³H] -thymidine incorporation is determined by liquid scintillation counting. All assays are performed in triplicate.

Table VIII

Micro molar IC₅₀ Values for Peptides and the Corresponding Peptide

Methane Sulfonates

MSI-78 MSI- -78MS MSI- -344 MSI- -344MS

Melanoma 3 4 5 3

Lung Cancer 3 4 10 6

Breast Cancer 4 4 8 4

Leukemia 9 7 20 7.5

MS=Methane Sulfonate

Example 11

Study of the Maximal Tolerated Dose (MTD) for Single Administration

(Intravenously or Intraperitoneally) of MSI-344 (SEQ ID NO: 154-OH) and MSI-1857(SEQ ID NO: 154-OH methane sulfonate) in Mice

Summary:

Determinations of a maximal tolerated dose (MTD) of a single intravenous (i.v.) administration or mtraperitoneal (l.p.) administration of MSI-344 or MSI-1857 ιr 100 CD-1^®BR mice were done. The MTD of a single intravenous (_.v. aαmmistration was 10 mg/kg for MSI-344 and 60 mg/kg for MSI-1857. The MTD of a single mtraperitoneal (l.p.) administration was less than 20 mg/kg for MSI-344 and between 50 and 100 mg/kg for MSI-1857. The estimated LD50s (the dose that produces lethality in 50% of the animals injected) for intravenous administration were 12.5 and 73 mg/kg for MSI-344 and MSI- 1857, respectively. The LD50s l.p. were 23.5 and 120 mg/kg for MSI-344 and MSI-1857, respectively. These data suggest that methane sulfonation of MSI-344 increases the safety of the compound administered in vivo approximately 5-fold when compared to MSI-344.

Objective:

To determine estimates of MTDs and LD50s of MSI-344 and MSI- 1857 administered intravenously or intraperitoneally as a single bolus in mice.

Materials and Methods: Animals :

100 male CD-1^®BR mice (Charles River Lab) arrived in two group and exhibited a body weight range of 20-26.3 gms at study initiation. Solution prep:

A 5 mg/mL solution of MSI-344 was maαe in saline (0.9% sodium chloride injection USP, Abbott, North Chicago, IL) corrected for peptide content. Solutions of MSI-344 at concentrations of 4, 3, 2, 1.5, 1, and 0.5 mg/mL were made by diluting the 5 mg/mL solution using saline as diluent. (Errors were made in solution preparation of the 4, 3, and 2 mg/mL solutions and results from groups with animals doses with these solutions, i.e. groups 12, 13, and 14, were eliminated from study analysis) . A 20 mg/mL solution of MSI-1857 was made in saline. Solutions of MSI-1857 at concentrations of 15, 10, 8, 6, and 5 mg/mL were made by diluting the 20 mg/mL solution using saline as diluent.

Another 5 mg/mL solution of MSI-344 was made in saline corrected for peptide content. Solutions of 4, 3 and 2 mg/mL were made by diluting the 5 mg/mL solution using saline as diluent. A 15 mg/mL solution of MSI-1857 in saline was made corrected for peptide content. A 10 mg/mL solution was made by diluting the 15 mg/mL solution with saline. Protocol :

Mice (four mice per dose group) were intravenously or intraperitoneally administered a single bolus of MSI-344 or MSI-1857 using an injection volume of 10 mL/kg of the appropriate solution concentration. If the first two mice in a group died immeαiately (within 10 sees) after administration of a αose then no other mice were injected with this dose of this compound (for ethical reasons). Survival was monitored daily for at least eight days post-admmistration. Study designs are presented in Tables IX and X. Toxicity Study # 262 was a supplement to Toxicity Study #261. Table IX. Study Design for Toxicity Study#261

Only two of four mice were m^ecteα because of resulting immediate αeath; for etmcai reasons the remaining two mice in this group were not injected.

° TBD= to be determined; there were errors made in solution preparation of these groups so concentration and dose were unknown; results from these groups were eliminated from analysis of th s study.

Results:

See Table XI for survival results. All animals intravenously dosed with 10 mg/kg or less of MSI-344 survived while all animals dosed with 60 mg/kg of MSI-1857 survived. All animals intraperitoneally dosed with 50 mg/kg of MSI-1857 survived.

Dose response curves (Figure 10) indicated that the LD50s i.v. for MSI-344 and MSI-1857 were approximately 12.5 and 73 mg/kg, respectively. Dose response curves (Figure 11) indicated that the LD50s l.p. for MSI-344 and MSI-1857 were approximately

23.5 and 120 mg/kg, respectively.

Table XI. Survival Count

en c

CD en H

H c

H m m x m m

-i

' Day 0 designates pre-study limepoinl (I.e. the number of animals injected) c ^% No. of mice in these groups limiled lo two because they died immediately after injection and for ethical reasons no more mice were injected with this dose. r~ TBD^e An error was made In solution prepartion of groups 12. 13. and 1 . so results were uninlerpertable eliminated from study analysis. m ro TBD=to be delermined, referring lo concentrations and dose σ>

Conclusions :

The maximal tolerated doses (MTDs) for intravenous administration of MSI-344 and MSI-1857 (the methane sulfonated MSI-344) were 10 and 60 mg/kg, respectively, in mice. The MTDs for intraperitoneal administration of MSI-344 and MSI- 1857 were <20 and 50 mg/kg, respectively.

The approximate dose that caused lethality in 50% of dosed animals (LD50) for intravenous administration of MSI-344 and MSI-1857 in mice were 12.5 and 73 mg/kg, respectively. The LD50s for intraperitoneal administration of MSI-344 and MSI- 1857 were approximately 23.5 and 120 mg/kg, respectively.

These results suggest that methane sulfonation of MSI-344 caused a significant improvement in the safety profile (approximately 5-fold increase) compared to MSI-344.

Example 12

Study of the Maximal Tolerated Dose (MTD) of Repeat-Dose

Intraperitoneal Administration of MSI-344 ( SEQ ID NO : 154-OH) and

MSI-1857 ( SEQ ID NO : 154-OH methane sulfonate ) in Mice

Summary :

Determinations of a maximal tolerated dose (MTD) of repeat- dose mtraperitoneal (l.p.) administration of MSI-344 or MSI- 1857 in 60 SCID mice were done. Mice were injected with various doses of MSI-344 or MSI-1857 twice or thrice per week. Survival and body weight were monitored. On a twice per week dosing schedule, the MTDs of MSI-344 and MSI-1857 were 12 and 134 mg/kg/week, respectively. This demonstrated that MSI-1857 had an 11-fold increase m safety index compared to MSI-344. On a thrice per week dosing schedule, no deaths occurred any groups, with high dose groups of MSI-344 and MSI-1857 receiving 90 mg/kg/week and 18 mg/kg/week, respectively. A transient body weight loss was seen after initial dosing in most MSI-344 and MSI-1857 groups. No body weight loss greater than 6% occurred in any group on the tnrice per week dosing schedule. The results indicate that methane sulfonation of MSI-344 enhances the safety profile compared to MSI-344 in chronic dosing regimens.

Obj ective :

To determine estimates of MTDs of MSI-344 and MSI-1857 when administered intraperitoneally on repeat-dose regimens in SCID mice. The selection of SCID mice was based on the future plans of using this strain as host for xenograft human tumor efficacy models, and a pre-requisite for determining MTD for chronic administration that may be used during the efficacy model .

Material and Methods: Animals :

Two groups of sixty SCID male mice (Fox Chase C.B- 17/IcrTac-scidfDF, Taconic Labs) exhibited a body weight range of 19.6-25.8 gms at study initiation. SCID mice are immunocompromised and therefore they were housed and handled in sterile environments. They had access to sterile water and sterilized chow ad lib.

Solution prep:

A 1 mg/mL solution of MSI-344 was made in saline (0.9% sodium chloride injection USP, Abbott, North Chicago, IL) corrected for peptide content. Solutions of MSI-344 at concentrations of 0.6, 0.3, and 0.1 mg/mL were made by diluting the 1 mg/mL solution using saline as diluent. A 10 mg/mL solution of MSI-1857 was made in saline .

Solutions of MSI-1857 at concentrations of 6.7, 3.3, 3, 2, and 1 mg/mL were made by diluting the 10 mg/mL solution using saline as diluent.

A 4.5 mg/mL solution of sodium metabisulfite (Aldπch Co.) m saline was prepared.

Solutions were made fresh on a weekly basis. Protocol :

Mice (four mice per dose group) were intraperitoneally administered MSI-344 or MSI-1857 using an injection volume of 10 mL/kg of the appropriate solution concentration on a twice per week (Groups 1 through 7) or thrice per week (Groups 8 through 15) dosing schedule every week for 20 weeks. Survival was monitored daily and body weights were recorded three times per week. An interim analysis was performed at 3 weeks and the results of this interim analysis is presented in the present report . Study design is presented in Table XII.

Table XII. Study Design for Toxicity Study#261

Results :

See Figure 12 for survival results for the twice per week dosing schedule. All animals in all groups dosed thrice per week survived. The maximal tolerated dose of MSI-1857 was 134 mg/kg/week (i.e. two injections per week times 67 mg/kg/injection) on a twice per week dosing schedule. On the same schedule, the MTD of MSI-344 was 12 mg/kg/week. The MTDs of MSI-1857 and MSI-344 on a thrice-per-week dosing schedule were ≥ 90 and 18 mg/kg/week, respectively. The mean body weights are presented in Figures 13 and 14. On a twice per week dosing schedule, there were transient decreases in body weights in all groups compared to saline following the initial administrations but the medium- and low- dose groups recovered. On a thrice-per-week dosing schedule, there were transient decreases in body weights in the medium- and high-dose groups but weight gain recovered after the first week of treatment. In both dosing regimens, there was a dose- dependent effect on body weight.

Sodium metabisulfite was dosed at 135 mg/kg/week on three injection per week schedule. This dose is equidose to the quantity of sodium metabisulfite that was used to prepare the MSI-1857 in the MSI-1857 group dosed at 90 mg/kg/week. There was no lethality in this group nor was there any effect of sodium metabisulfite on body weight.

Conclusions :

On a twice per week intraperitoneal dosing schedule every week for three weeks, the maximal tolerated dose (MTD) of MSI-1857 (134 mg/kg/week) was 11-fold greater than MSI-344 (12 mg/kg/week) in SCID mice. On a thrice per week intraperitoneal dosing schedule, the MTD of MSI-1857 was greater than or equal to 90 mg/kg/week and the MTD of MSI-344 was greater than or equal to 18 mg/kg/week.

Initial dosings of MSI-344 or MSI-1857 caused a dose-dependent transient body weight loss in all surviving groups except the low dose group on the thrice-per-week dosing schedule. On the thrice-per-week dosing schedule, the greatest weight loss in any group was less than 6% of initial body weight.

Sodium metabisulfite was administered at a dose that was equivalent to the amount of metabisulfite contained in the MSI-1857 group dosed at 90 mg/kg/week (the dose had been corrected for peptide content) . Any toxicity or changes observed in the MSI-1857 group could have been due to the peptide dose or metabisulfite dose, if there was any free, unbound metabisulfite in the solution. The lack of any effect of the metabisulfite on lethality or body weight would suggest that the transient weight loss seen in the MSI-1857 group was not due to free metabisulfite. In addition, even complete release of bound metabisulfite from the high dose group would not cause any deleterious effects on survival or body weight.

The overall results from this study suggest that methane sulfonation of MSI-344 caused a significant improvement in the safety profile (11-fold increase) compared to MSI-344 during chronic dosing.

Example 13

Pharmacokinetics Study of Single Dose MSI-1324 (OCT-SEQ ID NO: 143- NH₂ methane sulfonate) dministration in Mice

Summary:

A pharmacokinetics study of MSI-1324 in mice using a single dose administration was conducted. Thirty-two CD-I male mice were injected with MSI-1324 sodium with a dose of 140 mg/kg (corrected for peptide content) . Terminal blood samples were obtained from 2 to 4 mice at ti epoints of 0 (prior to dosing) , 5, 15, 30, 60 min, 2, 4, 6, 24, and 48 hours post-dose. Plasma concentrations were estimated by bioassay. Peak activity was seen at 5 min post-dose and was below detection limits of the assay by 60 min.

Objective :

To determine the pharmacokinetics profile of MSI-1324 after intravenous administration in mice.

Materials and Methods: Animals :

40 animals CD-l^βBR mice (Charles River Lab) with a mean body weight of 25.6 gms at study initiation were used. Solution prep :

A 14 mg/mL solution of MSI- 1324 was made in saline ( 0 . 9% sodium chloride inj ectable USP , Baxter ) corrected for peptide content .

Protocol :

Thirty-six mice were intravenously administered a single bolus of MSI-1324 at a dose of 140 mg/kg corrected for peptide content using an injection volume of 10 mL/kg of the 14 mg/mL solution. Four mice were not injected and supplied pre-dosing blood samples. Terminal blood samples were obtained via cardiac puncture in halothane- anesthetized mice at timepoints of 0 (prior to dosing), 5, 15, 30, 60 min, 2, 4, 6, 24, and 48 hours post-dose. Two to four mice were terminally bled at each timepoint. The blood samples were centrifuged and plasma transferred into separate tubes for bioassay analysis. The bioassay used was antibacterial zone clearing (disk diffusion) on Escherichia coli lawns. Results :

Figure 15 shows the standard curve of E. coli zone clearing of MSI-1324 used in the bioassay. Figure 16 shows the plasma concentrations (estimated from the bioassay) in mice at various times after a dose of 140 mg/kg. Peak concentrations of approximately 600 ug/mL were observed at 5 min post-dose (the first sampling timepoint post-dose) . Concentrations were below the limit of detection (approximately 150 ug/mL) of the bioassay at 60 min post-dose. The insert in the figure shows no detectable level at later time points.

Conclusions

MSI-1324 showed peak concentrations at 5 min after intravenous administration of 140 mg/kg in mice. Plasma levels were below detection at 60 min and later timepoints.

Example 14

In vivo Human Tumor Xenograft Model For the human lung tumor model, female nude mice weighing approximately 20g are implanted s.c. by trocar with fragments of SK-MES human lung tumors harvested from s.c. growing tumors in nude mice hosts, while for the human breast tumor model, the mice are injected in the mammary fat pad (mfp) with 1EE6 MDA-MB-435 cells from culture. When tumors reach approximately 5mm x 5mm (about ten to fourteen days after inoculation) , the animals are pair-matched into treatment and control groups. Each group contains 10 tumored mice, each of which is ear-tagged and followed individually throughout the experiment. The administration of drugs or vehicle begins the day the animals are pair-matched (Day 1) . The mice are dosed intraparationally either twice or three times a week. Mice are weighed twice weekly, and tumor measurements are taken by calipers twice weekly, starting on Day 1. These tumor measurements are converted to mg tumor weight by a well-known formula, L5 x /2. The experiment is terminated when control tumors reach a size of 1 gram for the breast tumor model and a size of 2 grams for the lung tumor. Upon termination, all mice are weighed, sacrificed, and their tumors excised. Tumors are weighed, and the mean tumor weight per group is calculated. In this model, the mean treated tumor weight / mean control tumor weight x 100 (T/C) is subtracted from 100% to give the tumor growth inhibition (TGI) for each group.

Some drugs cause tumor shrinkage in this human tumor xenograft model. With these agents, the final weight of a given tumor is subtracted from its own weight at the start of treatment on Day 1. This difference divided by the tumor weight is the % shrinkage. A mean % tumor shrinkage can be calculated from data from the mice in a group that experienced tumor regressions. If the tumor completely disappears in a mouse, this is considered a complete regression or complete tumor shrinkage. If desired, mice with partial or total tumor regressions can be kept alive past the termination date to see whether they live to become long term, tumor-free survivors.

Statistics are performed on the data using primarily the log rank p-value test. The peptides or proteins of the present invention, whether administered alone or in combination with agents such as ions having pharmacological properties, antibiotics, or other biologically active peptides or proteins as hereinabove described, may be employed in a wide variety of pharmaceutical compositions in combination with a non-toxic pharmaceutical carrier or vehicle, such as a filler, non-toxic buffer, or physiological saline solution. Such pharmaceutical compositions may be used topically or systemically and may be in any suitable form such as a liquid, solid, semi-solid, injectable solution, tablet, ointment, lotion, paste, capsule, or the like. The peptides or proteins and/or agent as hereinabove described may also be used in combination with adjuvants, protease inhibitors, or compatible drugs where such a combination is seen to be desirable or advantageous in controlling infection caused by harmful microorganisms including protozoa, viruses, parasites, fungi, and the like.

The peptides or proteins may be administered to a host, in particular an animal, in an effective antibiotic and/or anti-tumor and/or anti-viral and/or anti-microbial and/or spermicidal and/or anti-fungal and/or anti-parasitic amount, or in an amount effective to stimulate wound healing in a host, or in an amount effective in treating sepsis or septic shock in a host. The peptides or proteins may be administered either alone or in combination with an ion having pharmacological properties, an antibiotic, or an ion channel forming peptide or protein as hereinabove described. When the peptide or protein is administered in combination with an ion having pharmacological properties, the activity of the peptide or protein is potentiated.

When the peptide or protein is administered in combination with an agent as hereinabove described, it is possible to administer the peptide and agent in separate forms. For example, the agent may be administered systemically and the peptide or protein may be administered topically.

When the peptide or protein is administered topically, it may be administered in combination with a water-soluble vehicle, the water-soluble vehicle being in the form of an ointment, cream, lotion, paste, or the like. Examples of water-soluble vehicles which may be employed include, but are not limited to, glycols, such as polyethylene glycol, hydroxycellulose, and KY Jelly. The water-soluble vehicle is preferably free of an oily substance. The peptide or protein may also be employed alone, or in combination with an ion having pharmacological properties, as hereinabove described, in the form of an oral composition for oral hygiene. Such a composition may be incorporated into a wide variety of compositions and materials used for oral hygiene purposes, which include, but are not limited to, toothpastes, mouthwashes, tooth gels, and tooth powders. Such composition may thus be used to treat or prevent periodontal diseases, to prevent or reduce plaque, gingivitis, and/or to prevent or treat or reduce dental caries. The peptide and ion having pharmacological properties may be used to inhibit, prevent, or destroy the growth of Streptococcus mutans, which is associated with dental caries and periodontal disease.

It is to be understood, however, that the scope of the present invention is not to be limited to the specific embodiments described above. The invention may be practiced other than as particularly described and still be within the scope of the accompanying claims .

Claims

WE CLAIM :

1. A method of treating sepsis or septic shock in a host comprising: administering to a host an effective amount cf an N-terminal substituted peptide, a pharmaceutically acceptable salt thereof, or a methane sulfonate derivative or analogue thereof, to treat sepsis or septic shock, the N-terminal substituted peptide having the formula:

T - N - X wherein X is a biologically active amphiphilic peptide or protein, the peptide being an ion channel-forming peptide or protein, T is a lipophilic moiety, and W is T or hydrogen.

2. A method according to claim 1, wherein the N-terminal substituted peptide has the structure: Oct-SEQ ID No. 143.

3. A method according to claim 1, wherein X is a biologically active peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X₅₀ :

— R_{4 1}— R₄2^— R-42~~ ∑ 1 R- 2^— ∑ 2~ ∑ 1^— °41^_ ^42~~ ^ 1~~ R- 1- / wherein R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

0 R - C - , R is a hydrocarbon having at least 2 carbon atoms .

4. A method according to claim 3, wherein X includes the structural formula Y₅₀—X₅₀, wherein Y₅₀ is :

⁽i⁾ R₄_;

(ii) R₄₂-R₄₁; cr (iii) R₄₂-R₄₂-R₄₁.

5. A method according to claim 1, wherein X is a biologically active peptide, the peptide being an ion channel - forming peptide, wherein X includes the following structure X₅₂ :

—R₄₂—R₄l^— 42^—R 2~R- I^-'R- 1^-'R- 2^—R-42~R-41^—^ 2^—^42^~ i wherein R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

0 R - C - , R is a hydrocarbon having at least 2 carbon atoms.

6. A method according to claim 5, wherein X includes the

structural formula Y_c,—X_s2, wherein Y_S2 is:

(i) R₄₂;

(iv) R₄₂-R₄₁-R₄₁-R₄₂ ; or

( V ) R₄₂— R₄2^— R-41~R 1- ' 42 •

7. A method according to claim 5, wherein X includes the

structural formula X₅₂—Z₅₂, wherein Z₅₂ is:

(i) R₄ι;

(ll) R₄₁ R₄₁ ;'

(II ) R₄₁ R₄₁ R₄₂ ;

(iv) R₄₁-R₄₁-R₄₂-R₄₂ ; or

( v ) R_{4 x}— R₄ j— R₄₂— R₄₂— R₄ ]_ .

8. A method according to claim 1, wherein X is a biologically active peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X₆₂ :

—R₄]_—R₄2~R₄₂~ ₄1~R42 R42~R 1^—/ wherein R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid; and

T is a lipophilic moiety, wherein if T is O

I!

R - C - , R is a hydrocarbon having at least 2 carbon atoms.

9. A method according to claim 8, wherein X includes the structure Y₆₂ — X₆₂, wherein Y₆₂ is:

(i) R₄_;

(iii) R₄₂-R₄₂-R₄₁; or (iv) R₄₁—R₄₂—R₄₂—R₄₁.

10. A method according to claim 1, wherein X is a biologically active peptide having the following structure:

(SEQ ID NO: 143) .

11. A method according to claim 8, wherein X includes the structure X₆₂ — Z₆₂, wherein Z₆₂ is:

(i) R₄_;

(iii) R₄₁-R₄₂-R₄₂; or

(iv) R₄₁—R₄₂—R₄₂—R₄₁.

12. A method according to claim 8, wherein X includes the

structural formula (Y₆₂)_a — ₆2 ~ (Z₆₂)_b/ wherein Y₆₂ is :

( i i ) R_{42 1} !

( iii ) R₄₂— R₄₂— R₄₁ ; or

is :

(i) R₄₁; (11) R₄₁—R₄₂; (iii) R₄₁—R₄₂—R₄₂; or (iv) R₄₁—R₄₂—R₄₂—R₄₁, a is 0 or 1, and b is 0 or 1.

13. A method according to claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X₆₄ :

—R₄₂—R₄₂—R₄₂—R₄j—R_4l~R₄₂~ ₂ ^— ₄₁ ^— ' wherein R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

O

II

R - C - , R is hydrocarbon having at least 2 carbon atoms.

1 . A method according to claim 13 , wherein X includes the

structure Y₆₄—X_64/ wherein Y₆₄ is: ( i) R₄₁ ; or

15. A method according to claim 13, wherein X includes the

structure X₆₄—Z₆₄, wherein Z₆₄ is:

⁽ i⁾ ₄₂;

(iii) R₄₂—R₄₂—R₄₁.

16. A method according to claim 13 , wherein X includes the

structural formula: (Y₆₄) _a—X₆₄— (Z₆₄) _b, wherein Y₆₄ is :

(i) R₄₁; or

Z₆₄ is:

(i⁾ R₄₂; (ii) R₄₂-R₄₂; or (iii) R₄₂— ₄₂—R₄₁, a is 0 or 1, and b is 0 or 1.

17. A method according to claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion

channel-forming peptide, wherein X includes the following structure X₆₆ :

R₄1 R₄2 42 1 R 1 46 R42 1 R-42 -42 R41 ' wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid, and R₄₆

is glutamic acid; and T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms. 18. A method according to claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion channel-forming peptide, wherein X includes the following

structure X₆₈ :

— R₄₂ 42~ 41~~ 41^{— '} 42~ 6~~ 1~R 2~ ^' 42~~ 41^— / wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid, and R₄₆ is glutamic acid; and

T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms .

Ill „,-,.-, „,„

PCT US98/14610

19. A method according to claim 18, wherein X includes the

structure Y₆₈—X₆₈, wherein Y₆₈ is R₄₁.

20. A method according claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X₇₀ :

—R₄j—R₄₂—-R^2^—R 1^— ₁ ^— 42~R42~ 41^— 42~R42^— 1^—^41~/ wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms.

21. A method according to claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion channel-forming peptide, wherein X includes the following structure X₇₂ :

42~~ 2~~ 1^— 41~ R-42 ~ ^'R 7^— 41^— 42~ 42~ 41^— ' wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid, and R₄₇ is aspartic acid; and T is a lipophilic moiety, wherein if T is 0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms.

22. A method according to claim 1, wherein X is a biologically active peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X₇₆ :

—R₄₁ R₄₂—R₄₂ R₄₁—R₄₁—R₄₂—, wherein R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms.

23. A method according to claim 22, wherein X includes the structure Y₇₆—X_76/ wherein Y₇₆ is:

⁽i⁾ R₄ ;

(iv) R₄₁—R₄₁—R₄₂—R₄₂ ;

(v) R₄₂—R₄₁—R₄₁—R₄₂—R₄₂; or

(vi) R₄₂—R₄₂ ^~ 41^—R41^— 42^~R 2 •

24. A method according to claim 22, wherein X includes the

structure X₇₆—Z₇₆, wherein Z₇₆ is:

(i) R₄₈;

(iii) ₄₈- ₄₁- _42/ wherein R₄₈ is a basic hydrophilic, neutral hydrophilic, or hydrophobic amino acid.

25. A method according to claim 22, wherein X includes the

structural formula (Y₇₆) _a—X₇₆— (Z₇₆) _b,

wherein Y₇₆ is:

(i) R₄₂;

(iv) R₄₁—R₄₁—R₄₂—R₄₂ ;

(V) ₄2^— R41^"" 1~R 2~ 2 '^{* O T}

(vi) R₄₂—R₄₂—R₄₁—R₄₁—R₄₂—R₄₂,

Z₇₆ is:

( 1) R₄₈ ;

(ii) R₄₈-R₄₁; or

(iii) R₄₈—R₄₁—R₄₂, wherein R₄₈ is a basic

hydrophilic, neutral hydrophilic, or hydrophobic amino acid,

a is 0 or 1, and b is 0 or 1.

26. A method according to claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion channel-forming peptide, wherein X includes the following structural formula X₇₈ :

—R₄j—R₄2~ 41^— 41^— 42^— 42~^" 1~R42~ 42^— 41^— 1 wherein R₄₁ is a hydrophobic amino acid, and R₄₂ is a basic hydrophilic amino acid or a neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms .

27. A method according to claim 1, wherein X is a biologically active amphiphilic peptide, the peptide being an ion channel-forming peptide, wherein X includes the following structural formula X₈₀ :

41^— 2~~ R 2~ 41 R41^— R42~ 46~ 41^— 41~~ R-42^— 1^— / wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic amino acid or a neutral hydrophilic amino acid, and R₄₆ is glutamic acid; and T is a lipophilic moiety, wherein if T is O

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms.

28. A method according to claim 1, wherein X is a biologically active peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X₅₄ :

—R₄j—R₄₂—R₄₂—R₄₁—R_{4 χ}—R₄₂~ ₄₂~ ₁ ^—R₄2^— 42~- 41^— 41~ 42~~ 42~ 42~~R43~ ' wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid, and R₄₃ is a neutral hydrophilic amino acid; and T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms .

29. A method according to claim 1, wherein X is a biologically active peptide, the peptide being an ion channel- forming peptide, wherein X includes the following structure X_S6-Z₅₆, wherein X₅₆ is:

—R₄j—R₄₂~R 2^—R 1^—R41^— 42~R42~^"R41^— 41~R42~ 2~ 4~~' and Z₅₆ is :

( i) R₄ ;

( m ) R₄₂ ^— ₄₂ R₄₁ ;

(v) R₄₂— R₄₂— R₄₁— R₄₁— R₄₂ ; or

( Vi ) 4₂~ 42^_" 41~R 1~ 2~ R42~ R4I / wherein R₄₁ is a hydrophobic amino acid, R₄₂ is a basic hydrophilic or neutral hydrophilic amino acid, and R₄₄ is a neutral hydrophilic amino acid or proline; and T is a lipophilic moiety, wherein if T is

0

II

R - C - , R is a hydrocarbon having at least 2 carbon atoms. 30. A method of preparing a methane sulfonate derivative or analogue of an unsubstituted peptide or of an N-terminal substituted peptide having the formula:

T

I

T - N - X wherein X is a biologically active peptide or protein, the peptide being an ion channel-forming peptide or protein, and T is a lipophilic moiety or hydrogen, the method comprising: suspending a free base of the peptide in water; and mixing the suspended peptide and at least 0.5 equivalents of a bisulfite-formaldehyde complex based on the number of amino groups in the peptide for a period of 10 minutes or more to produce a methane sulfonate derivative or analogue of the

peptide .

31. A method according to claim 30, wherein the suspended peptide free base is mixed with 1 to 5 equivalents of the bisulfite-formaldehyde complex based on the number of amino groups in the peptide.

32. A method according to claim 30, wherein the suspended peptide free base is mixed with 1.1 to 3 equivalents of the bisulfite-formaldehyde complex based on the number of amino groups in the peptide.

33. A method according to claim 30, wherein the mixing period is in the range of from 10 minutes to 2 hours.

34. A method according to claim 30, wherein the mixing period is in the range of from 10 minutes to 1 hour.

35. A method according to claim 30, wherein the mixing period is in the range of from 15 minutes to 30 minutes.

36. A method according to claim 30, further comprising neutralizing a salt of the peptide to produce the peptide free base .

37. A method according to claim 36, wherein the peptide salt is neutralized by treating it with a base solution. _, _,_,„

PCT US98/14610

38. A method according to claim 37, wherein the base solution is a sodium carbonate solution.

39. A method according to claim 36, wherein the free base peptide precipitates during the neutralizing.

40. A method according to claim 39, further comprising isolating the precipitated free base peptide prior to suspending it in the water.

41. A method according to claim 30, further comprising recovering the methane sulfonate derivative or analogue of the peptide after mixing.

42. A method according to claim 41, wherein the methane sulfonate derivative or analogue of the peptide is recovered by filtering.

43. A method according to claim 41, further including lyophilizing the recovered methane sulfonate derivative or analogue of the peptide.

44. A method of reducing toxicity of an unsubstituted peptide or an N-terminal substituted peptide having the formula:

T

I

T - N - X wherein X is a biologically active peptide or protein, the peptide being an ion channel-forming peptide or protein, and T is a lipophilic moiety or hydrogen, the method comprising: forming a methane sulfonate derivative or analogue of the

peptide .

45. A method according to claim 44, wherein the forming includes : suspending a free base of the unsubstituted peptide or the N-terminal substituted peptide in water; and mixing the suspended peptide and at least 0.5 equivalents of a bisulfite-formaldehyde complex for a period of 10 minutes or more to produce the methane sulfonate derivative or analogue of the peptide.

46. A method according to claim 44, wherein an antimicrobial activity of the unsubstituted peptide or the N-terminal substituted peptide is not reduced or is not significantly reduced after the methane sulfonate derivative or analogue is formed as compared to an anti-microbial activity of the unsubstituted peptide or the N-terminal substituted peptide not including a methane sulfonate group.

47. A method of treating a microbial infection, comprising: administering to a subject an effective amount of a methane sulfonate analogue or derivative of an unsubstituted peptide or a N-terminal substituted peptide, the peptide having the formula:

T

I

T - N - X wherein X is a biologically active amphiphilic peptide or protein, the peptide being an ion channel-forming peptide or protein, and T is a lipophilic moiety or hydrogen, .

48. A method according to claim 47, wherein the microbial infection is a lung infection.

49. A method according to claim 48, wherein the lung infection is caused by a P . aeruginosa organism.

50. A method according to claim 48, wherein the lung infection occurs in a cystic fibrosis patient.

51. A method according to claim 47, wherein the peptide is administered by inhalation.

52. A method according to claim 44, wherein an anti-tumor activity of the unsubstituted peptide or the N-terminal substituted peptide is not reduced or is not significantly reduced after the methane sulfonate derivative or analogue is formed as compared to the anti-tumor activity of the unsubstituted peptide or the N-terminal substituted peptide not including a methane sulfonate group.

53. A method of preparing a methane sulfonate derivative or analogue of an unsubstituted peptide or an N-terminal substituted peptide having the formula:

T

I

T - N - X wherein X is a biologically active peptide or protein, the peptide being an ion channel- forming peptide or protein, and T is a lipophilic moiety or hydrogen, the method comprising: a. dissolving a salt of the peptide in water; b. mixing the peptide salt and a molar excess of 30% neutral formaldehyde solution and a molar excess of a base, based on the number of amino groups in the peptide to produce a formaldehyde adduct ; and c. mixing the formaldehyde adduct with a molar excess of sodium metabisulfite based on the number of amino groups in the peptide to produce a methane sulfonate derivative or analogue of the peptide.

54. A method according to claim 53 , wherein the molar excess of the 30% neutral formaldehyde solution is 1 to 25 equivalents .

55. A method according to claim 53, wherein the molar excess of the 30% neutral formaldehyde solution is 1.1 to 12.5 equivalents .

56. A method according to claim 53, wherein the molar excess of the base is 1.1 to 12.5 equivalents.

57. A method according to claim 53, wherein the molar excess of the base is 1.1 to 6.25 equivalents.

58. A method according to claim 53, wherein the base is sodium bicarbonate .

59. A method according to claim 53, wherein the molar excess of sodium metabisulfite is 1 to 5 equivalents.

60. A method according to claim 53, wherein the molar excess of sodium metabisulfite is 1.1 to 3 equivalents.

61. A method of treating a tumor, comprising: administering to a subject an effective amount of a methane sulfonate analogue or derivative of an unsubstituted peptide or an N-terminal substituted peptide, the peptide having the formula :

T T - N - X wherein X is a biologically active amphiphilic peptide or

protein, the peptide being an ion channel-forming peptide or

protein, and T is a lipophilic moiety or hydrogen.