WO1999067392A2 - Modified plant metabolism using pyrophosphate-dependent phosphofructokinase - Google Patents
Modified plant metabolism using pyrophosphate-dependent phosphofructokinase Download PDFInfo
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- WO1999067392A2 WO1999067392A2 PCT/CA1999/000570 CA9900570W WO9967392A2 WO 1999067392 A2 WO1999067392 A2 WO 1999067392A2 CA 9900570 W CA9900570 W CA 9900570W WO 9967392 A2 WO9967392 A2 WO 9967392A2
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- C—CHEMISTRY; METALLURGY
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- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
- C12N9/1205—Phosphotransferases with an alcohol group as acceptor (2.7.1), e.g. protein kinases
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8242—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
- C12N15/8243—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
- C12N15/8245—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving modified carbohydrate or sugar alcohol metabolism, e.g. starch biosynthesis
Definitions
- Carbohydrate metabolism is a complex process in plant cells. Through the process of photosynthesis, sugars are synthesized and are used for a variety of purposes. Starch and fatty acids are synthesized in the plastids. A variety of processes result in a multitude of carbohydrate, protein, fiber and oil products.
- Pyrophosphate:fructose 6-phosphate 1 -phosphotransferase catalyzes the phosphorylation of fructose-6-phosphate, thus supplying the plant with fructose- 1, 6-bisphosphate during glycolysis. Little is known regarding the role of this important enzyme in photosynthetic organisms. Attempts have been made to study PFP in plants but, due to compensatory pathways and feedback regulation of the endogenous plant gene, it has been difficult to determine how PFP affects end product synthesis in plants and seeds.
- This invention relates to constructs and methods for the modification of carbohydrates in photosynthetic organisms.
- this invention relates to nucleic acid constructs comprising a gene which is not endogenous in photosynthetic organisms and which encodes a PFP protein, preferably a Giardia PFP enzyme.
- vectors comprising expression constructs containing nucleic acid sequence(s) encoding a non- plant or unregulated PFP enzyme operably linked to a promoter sequence, either tissue-specific, constitutive or inducible, for transfer of these sequences and integration into the genome of the cell of a photosynthetic organism.
- plant transformation vectors may include Agrobacterium T-DNA border region(s) to provide for transfer of the sequences to the plant cell.
- a method for modifying the level of one or more metabolic products of a plant, plant part or photosynthetic cell comprises: a. transforming a plant, plant part or photosynthetic cell with a recombinant DNA construct containing an unregulated PFP; b. optionally regenerating the plant part or photosynthetic cell to generate a whole plant; and c. subjecting the transgenic plant, plant part, or photosynthetic cell to conditions wherein the unregulated PFP is expressed; wherein the level of the one or more metabolic products of the plant, plant part or photosynthetic cell are modified relative to an untransformed plant, plant part or photosynthetic cell.
- the methods of the invention are particularly useful for modifying the plant, tissue or cellular levels of fiber, oil and protein.
- the invention further describes stably transformed transgenic plants, plant cells or plant tissues or parts or cell cultures thereof made according to the methods.
- Preferred plants include Brassica sp. (e.g., canola), alfalfa, corn (maize), sorghum, soybean, sunflower, wheat, rice, rye, cotton, barley, turfgrass and potato.
- photosynthetic organisms especially plants, plant cells and tissues, containing nucleic acid sequences encoding the non-plant or unregulated PFP enzyme. Seeds and descendants of these transformed organisms are included as well.
- transformed plant cells having reduced or increased soluble sugars or starch content are considered.
- plant cells in starch storage organs, such as roots, tubers or seeds are considered.
- this invention relates to constructs and methods for manipulating the amount and ratio of many different metabolic products in these organisms, particularly plants. Specifically, reduction or enhancement in the levels of the soluble sugars, proteins, fiber and oil through manipulation of either plant or non plant pyrophosphate dependent phosphofructokinase is part of this invention. It is therefore recognized that modulation of glycolysis using the PFP enzyme or through inhibition of endogenous PFP has many commercial applications.
- Fig. 1 is a diagram of the relationship of the glycolytic pathway between the cytosol and the plastids of plants.
- Fig. 2 is a schematic representation of the 95.820 construct, which was used to clone the Giardia PFP gene.
- Fig. 3 is a schematic representation of the 95.1160 construct, which was used to transform Agrobacterium.
- Fig. 4 is the polynucleotide sequence (SEQ ID NO: 1) and encoded amino acid sequence (SEQ ID NO:2) of the Giardia lamblia PFP gene.
- Fig. 5 is a histogram depicting the level of enzyme activity in leaves. The enzyme activity in Units per gram of fresh weight tissue (y-axis) in the four T 3 lines PFP-1, PFP- 16, PFP-20, and PFP-23, and transgenic control pRD400, is shown for the four enzymes Giardia PFP, tobacco PFP, PFK, and FBPase.
- Fig. 6 is a bar graph showing the level of sucrose in ⁇ moles per gram of fresh weight leaf tissue (y-axis) for transgenic plants expressing Giardia PFP (black bars) compared to control plants (white bars). Samples were taken at 7 hours (initiation of light period) and 19 hours.
- Light intensity was 500 ⁇ mole per meter 2 per second, and temperatures were set at 22 °C (day) and 18°C (night).
- the data was pooled from four replicates each of lines PFP-1, PFP-16, PFP-20, and PFP-23, or Null-1, Null-16, Null-20, and Null-23.
- Fig. 7 is a bar graph showing the level of starch in ⁇ moles glucose equivalents per gram of fresh weight leaf tissue (y-axis) for transgenic plants expressing Giardia PFP (black bars) compared to control plants (white bars). Samples were taken at 7 hours (initiation of light period) and 19 hours. Light intensity was 500 ⁇ mole per meter 2 per second, and temperatures were set at 22 °C (day) and 18°C (night).
- Fig. 8 is a bar chart depicting the level of photosynthesis in transgenic plants (black bars) and null segregants (white bars) under different levels of light intensity. Carbon dioxide consumption in ⁇ moles CO 2 per meter 2 leaf area per second is shown on the y-axis, and irradiance (0, 300 and 1200 ⁇ moles quanta per meter 2 surface area per second) is shown on the x-axis.
- Fig 9 is a plot showing the correlation between the level of PFP activity (in ⁇ mol per minute per gram fresh weight tissue) and percent fiber in seeds nine days after anthesis. Each transgenic (•) and null segregant (O) data point represents a single measurement of a single plant.
- Fig. 10 is a plot showing the correlation between the level of PFP activity (in ⁇ mol per minute per gram fresh weight tissue) and protein in milligrams per gram of fresh weight tissue in seeds nine days after anthesis.
- Each transgenic (•) and null segregant (O) data point represents a single measurement of a single plant.
- Fig. 11 is a plot showing the correlation between the level of PFP activity (in ⁇ mol per minute per gram fresh weight tissue) and percent lipid in seeds nine days after anthesis.
- Each transgenic (•) and null segregant (O) data point represents a single measurement of a single plant.
- Fig. 12 is a plot showing the correlation between the level of PFP activity (in ⁇ mol per minute per gram fresh weight tissue) and starch, in ⁇ moles hexose equivalents per gram fresh weight tissue in seeds nine days after anthesis.
- Each transgenic (•) and null segregant (O) data point 5 represents a single measurement of a single plant.
- Fig. 13 is a graph showing reduced biomass accumulation in transgenic plants (•) relative to non-transgenic plants ( ⁇ ) as total grams of shoot and root dry weight at various days after transplanting.
- Figs. 14A and 14B are histograms comparing the levels of fiber (Fig. 10 14A) and lipid (Fig. 14B) in mature seeds of transgenic plants and seeds of nulls.
- This invention relates to a nucleic acid construct which encodes an unregulated pyrophosphate-dependent phosphofructokinase in plants or other
- this invention relates to a nucleic acid construct comprising a gene from the parasitic protist, Giardia lamblia, which encodes an enzyme which catalyses the interconversion of fructose-6- phosphate and fructose- 1,6-bisphosphate, and to functional segments thereof which encode a protein or polypeptide which also catalyses the
- lipid is meant the oils and fats naturally present in vegetative materials and especially the oil in oleaginous seeds, including saturated and
- carbohydrate is used herein in its usual context to mean a water-soluble saccharidic compound of carbon, hydrogen, and oxygen that contains the saccharose grouping.
- Monosaccharides, disaccharides, and low molecular weight polysaccharides are included in the term “carbohydrates.”
- Monosaccharides useful herein include simple sugars such as
- Disaccharides include such compounds as sucrose, maltose, and lactose.
- protein and “polypeptide” is meant any chain of amino acids, regardless of length or post-translational modification (e.g., glycosylation or phosphorylation).
- fiber is meant complex carbohydrates resistant to digestion by mammalian enzymes, such as the carbohydrates found in plant cell walls and seaweed, and those produced by microbial fermentation. Examples of these complex carbohydrates are lignin, brans, celluloses, hemicelluloses, pectins, gums and mucilages, seaweed extract, and biosynthetic gums. Sources of the cellulosic fiber include whole plants, vegetables, fruits, seeds, cereals.
- Pyrophosphate:fructose-l-6-phosphotransferase also called pyrophosphate-dependent phosphofructokinase, or PFP
- PFP catalyzes a reversible phosphorylation of fructose-6-phosphate (F6P) using inorganic pyrophosphate (PPi) as a phosphate donor. Absent in plastids, but with a near-ubiquitous distribution in the cytosol of plants, PFP is often more active than the ATP- dependent phosphofructokinase (PFK) and is activated by the regulator metabolite, fructose-2,6-bisphosphate. PFP obviously plays an important role in plant metabolism, but its actual contribution has been difficult to determine.
- PFK ATP- dependent phosphofructokinase
- PFP catalyzes a freely reversible reaction, the interconversion of fructose-6-phosphate and fructose- 1,6-bisphosphate while either using or generating pyrophosphate.
- Manipulation of enzymes involved in pyrophosphate metabolism also have a significant effect on the levels of sucrose and other soluble sugars.
- PFP levels have been manipulated in plants and are shown to have a significant effect on starch. Further, it is demonstrated that pyrophosphate-dependent phosphofructokinase (PFP) can also play a role in the control of carbohydrate levels in plants. These alterations in carbohydrate levels also result in changes to the amounts of ultimate products that are formed from the intermediates of glycolysis, e.g., oil, fiber, lignin, and protein.
- PFP pyrophosphate-dependent phosphofructokinase
- sucrose which is synthesized in the leaves and transported to the developing seed.
- invertase or the sucrose synthase pathway first converts the sucrose to hexose and the glycolytic pathway then oxidizes the hexose to pyruvate.
- the pyruvate dehydrogenase complex can further oxidize this to acetyl-CoA, the immediate carbon precursor for fatty acid biosynthesis.
- Fatty acid synthesis in plants occurs in plastids, especially leucoplasts which are specialized for fatty acid biosynthesis in seeds.
- Leucoplasts synthesize saturated and unsaturated fatty acids from acetyl-CoA. The fatty acids are exported into the cytosol of cells and stored in lipid bodies as triacylglycerol.
- the parasitic protist Giardia lamblia
- the gene contains a gene that, by homology to other genes, clearly encodes for the enzyme PFP.
- the gene has also been engineered to express in bacteria (e.g., E. coli), and is confirmed to have PFP activity.
- the amino acid homologies with the and ⁇ subunits of the potato enzyme are approximately 35% and 50% respectively.
- the enzyme from Giardia is, however, significantly different from the PFP of plants; in particular, the activity of PFP is not dependent on the activator fructose-2,6- bisphosphate, that is, when transformed into a plant, it behaves as an unregulated PFP.
- unregulated PFP is meant a pyrophosphate-dependent phosphofructokinase enzyme that interconverts fructose-6-phosphate and fructose- 1,6-bisphosphate without being regulated by the level of fructose-2,6- bisphosphate, which is a regulatory mechanism in plants.
- the enzyme is preferably highly active in the plant or plant cell.
- highly active it is meant the PFP has an activity level substantially the same as the endogenous PFP in the presence of fructose -2,6-bisphosphate.
- a PFP that, when isolated from one organism and placed in a different (photosynthetic) organism, catalyzes the interconversion of fructose-6-phosphate and fructose- 1 ,6-bisphosphate without being regulated by the levels of fructose-2,6- bisphosphate.
- the PFP enzyme is made up of two subunits: one catalytic and one regulatory. When a plant is transformed with the PFP from another plant, the regulatory subunit responds to the level of fructose-2,6-bisphosphate.
- the term "unregulated PFP” include not only those PFP enzymes that, when placed within a host plant, fail to respond to regulation (e.g., the Giardia PFP), but also those PFP enzymes in which the catalytic and/or regulatory subunits have been mutated such that the enzyme is active and non-responsive to fructose-2,6-bisphosphate regulation, e.g., a plant PFP wherein the subunits have been mutated or otherwise altered so as to render it non-responsive to regulation by the plant into which it has been transformed.
- Crystal structures are available for nonplant PFK and FBPase enzymes, and these two enzymes use the same carbon substrates (fructose-6-phosphate and fructose- 1,6-bisphosphate) as does PFP, and PFP and FBPase are allosterically regulated by frustose-2,6-bisphosphate, e.g. , FBPase is inhibited while PFP is activated.
- Plant PFP unlike Giardia PFP, is composed of two subunits, designated and ⁇ , which are believed to exist as heterotetramers consisting of two ⁇ and two ⁇ subunits.
- the ⁇ subunit is reported to contain the substrate binding sites (fructose-6-phosphate, pyrophosphate, fructose- 1,6- bisphosphate, phosphate), giving catalytic activity (Carlisle et al. (1990) J. Biol. Chem. 265:18366-18371).
- Fructose-2,6-bisphosphate activates PFP by eliciting a conformational change.
- This site can be mutagenized so as to make this conformational change permanent, thereby producing a mutant PFP that is constantly active, as is Giardia PFP.
- Substantial information is available on the essential amino acid residues of the catalytic site of PFP, including the crystal structure of E. coli PFK, sequence analysis, and computer modeling.
- PFP sequences are available for plants, including potato, castor bean, grapefruit, and Arabidopsis, allowing deduction of conserved essential amino acid residues for other plant PFP enzymes.
- Another strategy would be to mutagenize the fructose-2,6- bisphosphate binding site. Sites for mutagenesis would be chosen based on computer modeling and amino acid residues that are conserved between plant PFP enzymes and residues known to be essential for binding in PFP enzymes from other organisms, as deduced from crystal structures of fructose-2,6- bisphosphate complexed with FBPase (Liang et al. (1992) Proc. Natl. Acad. Sci.
- the present invention therefore is intended to encompass transformed plants containing such PFP enzymes which have been manipulated so as to be active and insentitive to fructose-2,6-bisphosphate, as is the Giardia PFP enzyme.
- “Mutated or otherwise altered” is intended to include selective mutation, spontaneous mutation, chemical mutagenesis, mutagenesis by genetic engineering, and mutation resulting from mating or other forms of exchange of genetic information, including, e.g., base changes, deletions, insertions, inversions, translocations, duplications, or frame-shifts.
- “unregulated” it is not intended that the activity of the enzyme is never to be controlled, but rather, that the expression of the enzyme may be regulated (e.g., turned “on” or “off in certain tissues or under certain conditions) in ways other than by the level of fructose-2,6-bisphosphate.
- a plant is challenged with an enzyme of primary carbohydrate metabolism, the activity of which it is unable to control.
- the coding sequence of the Giardia PFP gene was connected in a sense orientation to a tandem 35S CaMV promoter ( Figures 2 and 3 and Example 1).
- the resulting construct was transformed into tobacco, Brassica sp., and alfalfa.
- plants have been produced which demonstrate a variety of unregulated PFP activities. Since PFP catalyzes a freely reversible reaction that either utilizes or generates pyrophosphate, a metabolite that is involved in reactions controlling the synthesis and breakdown of sucrose, the presence of the Giardia PFP affects the level of starch, protein, oil and fiber in these plants.
- plant is meant a photosynthetic organism, and parts and cells of such organisms.
- the term is therefore meant to include whole plants, plant parts (e.g., tissues, seeds, roots, shoots, flowers, cutting, fruits, etc.), and cells, e.g., including tissue culture of such plants and plant parts.
- Descendants of such plants, plant parts and cells, e.g., tissue cultures of such plants, plant parts and cells, and descendants of such tissue cultures, are also intended to be included by the term "plant.”
- photosynthetic organism green plants, algae, fungi, and other organisms capable of photosynthesis when found in a wild type state, whether such organisms are multicellular or unicellular.
- the invention described herein demonstrates that the glycolytic and gluconeogenic pathways can be manipulated by expressing and thus increasing PFP expression over and above the endogenous levels in a photosynthetic organism.
- the increased PFP activity has an effect on other enzymes in the glycolytic pathway, pushing glycolysis in one direction depending on the plant tissue and the stage of development.
- oil formation is accelerated early in seed formation and the synthesis of fiber (e.g., lignin) is delayed, leading to a higher ratio of oil to fiber in the seeds of transgenic plants.
- stage of development is meant a particular point in the development and life cycle of the plant, e.g., germination, onset of flowering, seed set, seed production, development of tubers (in tuberous plants), senescence, etc.
- Transgenic seeds of the four transformed lines were found to have a higher percent germination rate than did seeds from the null segregants.
- Transgenic plants also differed from null plants in carbohydrate levels.
- Expression of Giardia PFP in transgenic plants produced a significant change in sucrose levels (Figure 7).
- Sucrose levels are reduced in source leaves at 7 hours (initiation of light period) and increased at 19 hours.
- Starch levels, as shown in Figure 7, were markedly reduced at 7 and at 19 hours indicating that carbohydrates could be utilized more rapidly in the dark in the transgenic plants.
- the soluble sugars are probably transported rapidly through the glycolytic pathway, especially during the night in transgenic plants, to sink tissues where these intermediates are used to produce oil, protein, fiber, and other end products.
- the protein levels in leaves were also lower than those of the null plants. These measurements were taken on a fresh weight basis. Fresh weights per square meter of leaf area did not differ between transgenic and null plants.
- Glycolytic enzyme activity levels were also measured in seeds of transgenic plants and compared to activity levels in nulls. In addition to elevated levels of PFP activity, other enzyme activity levels were also increased as follows: 1 ) PFK activity increased 2.0-fold;
- the effects of increased PFP activity does not result in morphological changes in the trangenic plants and seeds.
- the shoot to root ratio is unchanged between transgenic plants and nulls.
- the color of the plants also does not vary.
- the lipid levels of mature transgenic seeds are increased as well. Early in seed development (8-12 days after anthesis) there is an increase in the deposition of lipid (oil bodies) in the seed. The fiber levels are reduced ( Figure 9) and the oil levels increased ( Figure 11). As shown in Fig. 10, protein levels are also increased. Higher levels of oil and protein, and decreased levels of fiber are highly desirable in seed crops, because the oil and protein are the desirable economic products, while fiber adversely affects digestibility of the seed, thereby limiting its utility as an animal feed. Even in non-animal feed crops, fiber reduction is desirable because such reduction increases the percentage of valuable products (e.g., protein, oil) proportionally.
- valuable products e.g., protein, oil
- the method involves incorporating an isolated nucleic acid encoding a non-plant or unregulated PFP protein, such as Giardia pyrophosphate-dependent phosphofructokinase (SEQ ID NO:l) or its functional equivalent into a cell or organism and maintaining the cell or organism under conditions appropriate for expression of the encoded PFP enzyme or its functional equivalent.
- a non-plant or unregulated PFP protein such as Giardia pyrophosphate-dependent phosphofructokinase (SEQ ID NO:l) or its functional equivalent
- SEQ ID NO:l Giardia pyrophosphate-dependent phosphofructokinase
- the methods of the present invention can be used to enhance or reduce sugar and oil levels of plant parts, seeds, and plants, as well as in other types of photosynthetic organisms, such as unicellular algae. These methods of modulating carbohydrate and lipid levels are especially useful under conditions of phosphate starvation when other pathways, which depend on ATP are reduced in activity or completely inhibite
- the constructs of the present invention can function to modulate carbohydrate levels of all types of cells, preferably plant cells, and in cell lines of organisms, preferably plants.
- the cells can comprise single-celled prokaryotic organisms; i.e., the cyanobacteria (blue-green algae).
- the cells can be, plant- like or fungal-like protists (single-celled eukaryotic organisms).
- Multicellular organisms including all members of the fungi and plant kingdoms, are also suitable for application of the methods of this invention.
- Cell lines incorporating the constructs produced through the methods of this invention can be derived from any of these eukaryotic organisms.
- Tissue cultures and protoplasts can also incorporate constructs capable of expressing non-plant or unregulated PFP and can be useful for production of products and for research purposes.
- the methods of the present invention can be used in conjunction with other enzymes, such as phosphatases; i.e., incorporating phosphate-starvation promoters and enzymes, as well as other molecules into cells and photosynthetic organisms to further modify the accumulation of products.
- phosphatases i.e., incorporating phosphate-starvation promoters and enzymes
- these proteins are useful to modify the carbohydrate and lipid accumulation in every part of a plant.
- the invention described herein demonstrates for the first time the effects of overproduction of PFP in photosynthetic organisms and demonstrates that this enzyme is important not only under normal physiological environmental conditions, but also under conditions of stress, especially nutrient stress.
- a novel aspect of this invention is the finding that the Giardia pyrophosphate-dependent phosphofructokinase is unregulated in a photosynthetic organism and thus unaffected by the regulatory systems in these organisms. Even more surprising is the discovery that the expressed protein affects not only sugar accumulation but can change the quantity and ratio of lipids, fiber and protein in various plant organs. That Giardia pyrophosphate-dependent phosphofructokinase is effectively expressed in a construct in a transformed plant, without requiring additional introduction of a multicomponent enzyme system, is novel, unusual and advantageous. In one embodiment, therefore, levels of soluble sugars in photosynthetic organisms are reduced by elevating the efficiency of PFP activity which reduces sucrose, glucose and fructose levels.
- PFP activity in plants can be controlled to produce a novel and significant impact on the ultimate levels and kinds of carbohydrates, oils, lignins and protein found in various plant organs.
- the enhancement of foreign PFP protein production and its effect on sugar transport can be achieved by stably introducing a DNA construct comprising a nucleic acid encoding a functional PFP polypeptide operably linked to a promoter into a cell of a photosynthetic organism, preferably a plant, and putting the cell under conditions for expression of the protein.
- This method can enhance PFP activity in cells, tissues and organs of plants at levels which are not found in the naturally- occurring plant.
- the ability of the leaves of the transgenic plants expressing Giardia PFP to load sucrose into the phloem (and from there to seeds, roots and emerging leaves) is likely to be related to the phosphate status of the leaf and the inorganic phosphate/inorganic pyrophosphate (Pi/PPi) ratio. Since the reaction catalyzed by PFP utilizes PPi and generates Pi (or vice versa depending on the direction in which the enzyme is working), the reduction in sugar and starch levels could be the result of an effect on the loading of sucrose into the phloem.
- PFP Activity of PFP, unlike PFK, does not require ATP to function.
- PFK is ATP dependent and PFK modulation of the sugar content of plants will vary under conditions of phosphate sufficiency and phosphate deficiency.
- PFP as shown in Figure 1, is not ATP dependent and, under conditions where phosphate is limited, will still continue to drive pathways leading to sugar modulation.
- PFP under anaerobic conditions or other conditions of phosphate starvation, PFP will be a controlling factor in varying the sugar levels in various plant tissues, especially in the root where it is expressed.
- the many- faceted nature of sugar transport mechanisms in plants suggests that there are a significant number of combinations of promoters and PFP encoding genes that can affect the amounts and ratios of the products of carbon metabolism.
- constructs of this invention can include any promoter, tissue- specific, constitutive or inducible, which can drive the expression of a nucleic acid encoding a PFP polypeptide.
- tissue-specific, constitutive or inducible can drive the expression of a nucleic acid encoding a PFP polypeptide.
- isolated DNA is introduced into plant cells of a target plant by well-known methods, such as Agrobacterium-mediated transformation, microprojectile bombardment, microinjection, electroporation and in pl ⁇ nt ⁇ transformation.
- Cells carrying the introduced isolated and/or recombinant DNA can be used to regenerate transgenic plants which have altered phenotypes, therefore becoming sources of additional plants either through seed production or non-seed asexual reproductive means.
- the methods of this invention can be used to provide plants, seeds, plant tissue culture, plant parts, cells, and protoplasts containing one or more nucleic acids which comprise a modified or isolated introduced gene encoding a non-plant or unregulated PFP or its functional equivalent which alters glycolysis and the resulting products, such as starch, sugars, fiber and lipids.
- Plants parts can include roots, leaves, stems, flowers, fruits, meristems, epicotyls, hypocotyls, cotyledons, pollen and embryos.
- transgenic plants includes plants or photosynthetic protists which contain introduced DNA which, if transcribed and translated, changes the amount or type of one or more plant products compared to a wildtype (naturally-occurring) plant of the same species or variety grown under the same conditions.
- Transgenic plants include those into which isolated and/or recombinant nucleic acids have been stably inserted and their descendants, produced from seed, vegetative propagation, cell, tissue or protoplast culture, or the like wherein such alteration is maintained or PFP expression is detectable.
- the introduced DNA which is originally inserted into the plants or plant cells or protoplasts can include additional copies of other genes found in the naturally-occurring organism.
- transgenic plants can also contain introduced genes which encode useful products whose accumulation or harvest is facilitated by manipulation of sugar levels. In particular, an increase in oils, reduction of fiber or reducing sugars, and the like.
- Enhanced product accumulation as described in the present invention can be used to increase the solubilization and accumulation of such plant- derived products in the edible portions of plants or in the portions of plants intended to be harvested for extraction of these compounds, or even to change the size of plant parts.
- Transport and products can be altered, for example, in any plant organ; e.g., stems, roots, leaves, flowers and fruits.
- transgenic products which can be produced or whose production can be altered in both prokaryotic and eukaryotic photosynthetic organisms by the methods described herein is broad and encompasses many important naturally- occurring and foreign substances which are regulatory or are products themselves. These include, for example, storage products such as sugars, starches, pigments, lignin, lipids, glycolipids, phospholipids, proteins and the like. If naturally-occurring in the photosynthetic organism, the product may be produced at higher levels, compartmentalized in a different part of the cell, such as the plastid, mitochondrion, or vacuole, or even in a different organ, such as the flower, seed, root or leaf.
- storage products such as sugars, starches, pigments, lignin, lipids, glycolipids, phospholipids, proteins and the like.
- the product may be produced at higher levels, compartmentalized in a different part of the cell, such as the plastid, mitochondrion, or vacu
- lipids can be synthesized and/or accumulated at higher levels to enhance the oil content of the plant or plant part normally producing the lipid by methods provided herein.
- other product levels can be altered in a plant or a plant organ by incorporating the gene encoding the PFP and other genes encoding further enzymes in the constructs described herein, so that the glycolytic pathway and subsequent metabolic processes are directed to enhancement of a particular product or result in the reduction of a naturally- occurring product in the transformed organism.
- this invention provides methods for varying the phenotype of seeds and other storage organs of plants. These novel products or combination of products can be provided by enhancing and/or reducing the accumulation of molecules to be stored or by modifying the glycolytic pathway to alter the accumulation of particular products.
- alterations can include modifying the fatty acid and fiber composition in seeds by changing the ratio and/or amounts of the various fatty acids as they are produced.
- improvements in the amino acid composition of storage proteins can be generated.
- target substances are the storage proteins of seeds, such as napin, cruciferin, ⁇ -conglycinin, phaseolin, brazil nut protein, other 2S or 7S proteins, or the like, as well as proteins involved in fatty acid biosynthesis, such as acyl carrier protein.
- a construct comprising the gene encoding an unregulated or non-plant PFP, such as Giardia PFP, or nucleic acid encoding its functional equivalent and a promoter are incorporated into a vector as described in Example 1 or through other methods known and used by those of skill in the art.
- the construct can also include any other necessary regulators such as terminators or the like, operably linked to the coding sequence. It can also be beneficial to include a 5' leader sequence, such as the untranslated leader from the coat protein mRNA of alfalfa mosaic virus (Jobling, S.A. and Gehrke, L.
- Targeting sequences are also useful and can be incorporated into the constructs of this invention.
- a targeting sequence is used to direct peptides from the cytosol where translation occurs to a different cellular compartment (e.g., organelles, nucleus, vacuole, plasma membrane).
- Examples of targeting sequences useful in this invention include, but are not limited to, the yeast mitochondrial presequence (Schmitz et al. (1989) Plant Cell 7:783-791), the targeting sequence from the pathogenesis-related gene (PR-1) of tobacco (Cornellisen et al. (1986) EMBO J. 5:37-40), vacuole targeting signals (Chrispeels, M.J. and Raikhel, N.V.
- terminator sequences are usually incorporated into the construct.
- a 3' untranslated region (3' UTR) is generally part of the expression plasmid and contains a polyA termination sequence.
- the termination region which is employed will generally be one of convenience, since termination regions appear to be relatively interchangeable.
- the octopine synthase and nopaline synthase termination regions derived from the Ti-plasmid of A. tumefaciens, are suitable for such use in the constructs of this invention. Any suitable technique can be used to introduce the nucleic acids and constructs of this invention to produce transgenic plants with an altered genome. For grasses such as maize, microprojectile bombardment (see for example, Sanford, J.C.
- nucleotide construct or a vector containing the construct is coated onto small particles which are then introduced into the targeted tissue (cells) via high velocity ballistic penetration.
- the vector can be any vector which permits the expression of the exogenous DNA in plant cells into which the vector is introduced.
- the transformed cells are then cultivated under conditions appropriate for the regeneration of plants, resulting in production of transgenic plants.
- Transgenic plants carrying the construct are examined for the desired phenotype using a variety of methods including but not limited to an appropriate phenotypic marker, such as antibiotic resistance or herbicide resistance, or visual observation of the time of floral induction compared to naturally-occurring plants.
- an appropriate phenotypic marker such as antibiotic resistance or herbicide resistance
- nucleic acid constructs into plants 5 include Agrobacterium-mediated transformation (see for example Smith, R.H. et al., U.S. Patent No. 5,164,310 (1992)), electroporation (see for example, Calvin, N., U.S. Patent No. 5,098,843 (1992)), introduction using laser beams (see for example, Kasuya, T. et al., U.S. Patent No. 5,013,660 (1991)) or introduction using agents such as polyethylene glycol (see for example, Golds,
- plant cells may be transformed with a variety of vectors, such as viral, episomal vectors, Ti plasmid vectors and the like, in accordance with well known procedures.
- vectors such as viral, episomal vectors, Ti plasmid vectors and the like, in accordance with well known procedures.
- the method of introduction of the nucleic acid into the plant cell is not critical to this invention.
- the transcriptional initiation region may provide for constitutive
- promoter refers to a sequence of DNA, usually upstream (5') of the coding region of a structural gene, which controls the expression of the coding region by providing recognition and binding sites for RNA polymerase and other factors which may be required for initiation of
- Constitutive promoters for plant gene expression include, but are not limited to, the octopine synthase, nopaline synthase, or mannopine synthase promoters from Agrobacterium, the cauliflower mosaic virus (35S) promoter, the figwort mosaic virus (FMV) promoter, and the tobacco mosaic virus (TMV) promoter.
- Tissue-specific gene expression in plants can also be provided by the seed-specific promoter napin (Baszczynski et al. (1990) PI Mol. Biol. 74:633-635), the glutamine synthase promoter (Edwards et al.
- Heat-shock promoters the ribulose- 1,6-bisphosphate (RUBP) carboxylase small subunit (ssu) promoter, tissue specific promoters, and the like can be used for regulated expression of plant genes. Developmentally- regulated, stress-induced, wound-induced or pathogen-induced promoters are also useful.
- the regulatory region may be responsive to a physical stimulus, such as light, as with the RUBP carboxylase ssu promoter, differentiation signals, or metabolites.
- a physical stimulus such as light
- the time and level of expression of the sense or antisense orientation can have a definite effect on the phenotype produced. Therefore, the promoters chosen, coupled with the orientation of the exogenous DNA, and site of integration of a vector in the genome, will determine the effect of the introduced gene.
- regulated promoters also include, but are not limited to, the low temperature Kinl and cor6.6 promoters (Wang et al. (1995) Plant Mol. Biol. 25:605; Wang et al. (1995) Plant Mol. Biol 25:619-634), the ABA inducible promoter (Marcotte Jr. et al. (1989) Plant Cell 1:969-976), heat shock promoters, such as the inducible hsp70 heat shock promoter of Drosphilia melanogaster (Freeling, M. et al. (1985) Ann. Rev. of Genetics 19: 297-323), the cold inducible promoter from B. napus (White, T.C. et al.
- NTP303 promoter (Weterings et al (1995) Plant J. 8:55-63), the OSEM promoter (Hattori et al (1995) Plant J. 7:913-925), the ADP GP promoter from potato (Muller-Rober et al. (1994) Plant Cell 6:601-604), the Myb promoter from barley (Wissenbach et al. (1993) Plant J. 4:411-422), and the plastocyanin promoter from Arabidopsis (Vorst et al. (1993) Plant J. 4:933-
- Transgenic plants of this invention can contain isolated or recombinant nucleic acids which preferentially modify glycolytic pathways which are present in green tissues, or which are present in actively growing tissues or in storage tissues or organs such as seeds. In this manner, different products can be produced.
- this invention includes a method of producing a transgenic plant containing, in addition to isolated nucleic acids which encode a non- plant or unregulated PFP or its functional equivalent so that glycolysis is altered, at least one nucleic acid which encodes a polypeptide for production of a useful foreign product. Coupled with the altered glycolysis in the cells of
- the plant it is possible to design a plant wherein, when all of the inserted nucleic acids are expressed, the result is the large scale and inexpensive production of valuable carbohydrates, lipids, or other products in a particular plant tissue or at a particular stage of development.
- the methods described herein can be applied to all types of plants and other photosynthetic organisms, including: angiosperms (monocots and dicots), gymnosperms, spore-bearing or vegetatively-reproducing plants and the algae (including the blue-green algae). Further, the methods of this invention are suited to enhance translocation of substances in all prokaryotes. It is understood that prokaryotic organisms lack plastids and other organelles which compartmentalize products of photosynthesis and respiration, but the alteration of glycolysis can be accomplished which alters the production and accumulation of various products through expression of the PFP or its functional equivalent.
- Transgenic plants containing the constructs described herein can be regenerated from transformed or transfected cells, tissues or portions of plants by methods known to those of skill in the art.
- a portion of a plant is meant to include any part capable of producing a regenerated plant.
- this invention encompasses a cell or cells, tissue (especially meristematic and/or embryonic tissue), tissue cultures, protoplasts, epicotyls, hypocotyls, cotyledons, cotyledonary nodes, pollen, ovules, stems, roots, leaves, and the like. Plants may also be regenerated from explants. Methods will vary according to the plant species.
- Seed can be obtained from the regenerated plant or from a cross between the regenerated plant and a suitable plant of the same species.
- the plant may be vegetatively propagated by culturing plant parts under conditions suitable for the regeneration of such plant parts.
- plants can be regenerated from cultured pollen, protoplasts, meristems, hypotcotyls, epicotyls, stems, leaves, tubers, tissue cultures, and the like.
- the present invention has numerous commercial applications in agriculture, horticulture and processing of plant products.
- the examples provided below are not intended to be limiting as skilled artisans can find numerous possibilities for an enzyme which can be used to modulation the process of glycolysis.
- PFP protein phosphatidylcholine
- the use of non-plant or unregulated PFP provides a method of maintaining tuber quality and reducing cold sweetening during prolonged cold storage of potatoes and other tubers. Further, it can provide a method to inhibit the sprouting of tubers in storage without the use of chemical applications of inhibitors.
- the invention can be used to increase the overwintering capacity of plants such as alfalfa, turfgrasses, and some ornamentals.
- plants such as alfalfa, turfgrasses, and some ornamentals.
- overwinter successfully such plants must have sufficient carbohydrate reserves stored in the root systems by autumn. Further manipulation of carbohydrate metabolism is also useful to decrease biomass in situations where desirable, e.g., to produce slow-growing turgrasses, "miniature” ornamentals, etc.
- Other embodiments of these novel constructs can be used to create and alter the pattern and rate of lignin deposition in the seed coat of plants such as canola and soybean. Elevation of Giardia PFP level in transgenic plants reduces lignin formation in seeds.
- the constructs encompassed by this invention provide a means for increasing oil synthesis in plants harvested for their oils, such as Brassica.
- DNA can be constructed wherein the nucleic acid encoding a non-plant or unregulated PFP is attached to the napin promoter of Brassica so that oil synthesis in Brassica or Canola seeds is increased.
- this invention includes methods of increasing oil yields of crop plants and in other photosynthetic organisms.
- the manipulation of glycolysis using the constructs of this invention also provides transgenic plants and seeds wherein the storage oil and protein levels can be altered for specific purposes.
- crop plants such as canola can be produced with high oil to protein ratios, providing higher oil yields per acre.
- Soybeans can be altered to yield high protein or high oil content, depending on the use intended for the crop. Elevation of PFP levels can result in high oil levels.
- the elimination of endogenous PFP activity in transgenic plants can be accomplished by inactivating the endogenous PFP gene. Until now, the actual role of PFP in photosynthetic organisms was not known.
- the gene for the PFP enzyme from Giardia lamblia was selected for transformation because unlike plant PFP, it is not dependent on the presence of fructose-2,6-bisphosphate for activation.
- the gene for Giardia PFP was obtained from Dr. Miklos Muller at Rockefeller University, NY 10021, USA. The sequence of this gene has been published in Rozario, C, Smith, M.W., Muller, M. Biochimica et Biophysica Ada (1995) 260:218-222 ( Figure 4; nucleic acid sequence (SEQ ID NO:l) and amino acid sequence (SEQ ID NO:2)).
- PCR primers were designed which contained restriction sites to facilitate the construction of vectors for 1) overexpression of Giardia PFP in E.coli and to check for enzyme activity, and 2) transformation of plants.
- the primers were as follows:
- New primer (SEQ ID NO: 3) :
- the ATG (start) codon is in bold.
- the two new primers (SEQ ID NO:3 and SEQ ID NO:4) were used to generate a PCR fragment of 1749 bp containing the entire coding region for Giardia PFP.
- the EcoRI sites were used to clone the fragment into the bacterial expression vector pG ⁇ X-4T-l (Pharmacia Biotech, Uppsala, Sweden).
- Several plasmids containing inserts of the predicted size were obtained.
- 95.624 was used to overexpress the insert following the manufacturers instructions provided with the pGEX-4T-l vector.
- a fusion polypeptide of the correct size was obtained and activity of the overexpressed protein was confirmed by assaying for PFP activity.
- E.coli does not have this enzyme and any activity can, therefore, be attributed to expression of the Giardia gene.
- the second vector, that was used for plant transformation, was then constructed. Plasmid 95.624 was digested with ⁇ HII and Xbal releasing the Giardia PFP fragment with the ATG start codon. This was ligated to pBI525 digested with Ncol and Xbal.
- AfRll and Ncol are compatible restriction sites although neither site is reconstituted upon ligation and the resulting plasmid, designated 95.820 ( Figure 2), contained the tandem 35S-35S promoter and alfalfa mosaic virus transcriptional enhancer (from pBI525) linked to the PFP sequence and followed by the nos terminator, again derived from pBI525.
- Plasmid p95.820 was first sequenced to determine that the ATG start codon was in frame, and the plasmid was then digested with EcoRI and Hz ' ttdlll to release two fragments, one an EcoRI-H dIII fragment of about 0.95 kb and the other a H dIII fragment of about 1.7 kb. These were eluted from a 1.0% low melting agarose gel and purified using standard techniques.
- Agrobacterium-mediated transformation ofNicotiana tabacum cv. 'Petit Havana SRI' was achieved by the leaf disc method (Horsch et al. (1985) Science 227:1229-1331) and regenerated as described in Gottlob-McHugh et al. ((1992) Plant Physiology 100:820-825). Homozygous lines were selected by Southern blot analysis and the activity of Giardia PFP determined by conducting enzyme assays on various tissue extracts in the absence of fructose-2,6-bisphosphate. The latter is obligately required for activity of the native plant enzyme and, therefore, any activity in the absence of this enzyme can be attributed to the transgene.
- Example 3 Sampling procedures Plants or plant part samples were immediately frozen in liquid nitrogen after harvest, and stored at -80°C until analysis. Fresh weights were taken on frozen tissues. Before assay, tissues were ground to a fine powder in liquid nitrogen. All biochemicals and enzymes were supplied by Sigma (St. Louis, Missouri, USA) or Boehringer Mannheim (Indianapolis, Indiana, USA).
- aqueous-ethanol-insoluble residue was resuspended in 0.2 M KOH and boiled for 30 minutes to gelatinize the starch. The samples were then cooled and neutralized with 1M acetic acid. Starch was hydro lyzed overnight at 50°C with 10 U/ml ⁇ -amylase (EC 3.2.1.1) and 6 U/ml amyloglucosidase (EC 3.2.1.3) in 50 mM sodium citrate-acetic acid (pH 4.6).
- Glucose, fructose and sucrose were measured spectrophotometrically at 37°C in a 200 ⁇ L assay mixture containing 100 mM Hepes-KOH, 3 mM MgCl 2 , pH 7.4, 1.1 mM ATP, 0.5 mM NADP, and 0.4 U glucose-6-P dehydrogenase (EC 1.1.1.49) by the successive addition of either 0.4 U hexokinase (EC 2.7.1.1), 0.75 U phosphoglucoisomerase (EC 5.3.1.9), or 10.0 U invertase (EC 3.2.1.26), respectively. Hydrolyzed starch samples were assayed in the above mixture by the addition of 0.4 U hexokinase.
- Example 6 Enzyme Assay After grinding tissue or seed samples to a frozen powder, extraction buffer was added which contained 50 mM Hepes-KOH, pH 7.5, 5 mM MgCl 2 , ImM EDTA, 1 mM EGTA, 2 mM dithiothreitol, 1 mM benzamidine, 5 mM €-aminocaproic acid, 2 ⁇ M leupeptin, 1 mM PMSF, 2% (w/v) insoluble PVP, and 20% (v/v) glycerol. For seed samples, 10 mM thiourea was also included. Tissues were further homogenized in the extraction buffer until thawed. Samples were centrifuged for 2 minutes at 12,000xg and the supernatant was assayed for enzyme activity.
- Pyrophosphate-dependent phosphofructokinase (PFP; EC 2.7.1.90) activity was measured in a continuous spectrophotometic assay using a SpectraMax 250 microplate reader (Molecular Devices, Sunnyvale, CA).
- the assay mixture contained 50 mM Hepes-KOH, pH 7.5, 5 mM MgCl 2 , 10 mM fructose-6-P, 0.3 mM NADH, 0.3 U aldolase (EC 4.1.2.13), 0.3 U glycerol-3- P dehydrogenase (EC 1.2.1.12), 0.87 U triose-P isomerase (EC 5.3.1.1) and 5 ⁇ l extract in a 250 ⁇ l total volume.
- Fructose-6-P was pre-treated at pH 2 for 1 hour to destroy any contaminating fructose-2,6-bisphosphate, and was then neutralized with potassium hydroxide. After establishment of a background rate (A 340 -A 405 ), 2.5 mM Na 4 -pyrophosphate was added to measure the activity of the introduced Giardia PFP enzyme. Tobacco PFP activity was calculated from the difference between the Giardia PFP rate and the rate after the subsequent addition of 5 ⁇ M fructose-2,6-bisphosphate.
- ATP-dependent phosphofructokinase (PFK) activity was measured in a similar way to PFP using a continuous spectrophotometic assay.
- the assay mixture contained 50 mM Bicine, pH 8.0, 5 mM MgCl 2 , 10 mM fructose-6-P, 0.2 mM NADH, 0.3 U aldolase (EC 4.1.2.13), 0.3 U glycerol-3-P dehydrogenase (EC 1.2.1.12), 0.87 U triose-P isomerase (EC 5.3.1.1) and 10 ⁇ l extract in a 250 ⁇ l total volume. After establishment of a background rate (A 340 -A 405 ), 0.25 mM ATP was added to start the reaction.
- the assay mixture for fructose- 1,6-bisphosphatase contained 50 mM PIPES, pH 7.0, 5 mM MgCl 2 , 0.2 mM NADP, 1.0 U phosphoglucoisomerase (EC 5.3.1.9), 0.5 U glucose-6-P dehydrogenase (EC 1.1.1.49) and 10 ⁇ l extract in a 250 ⁇ l total volume. After establishment of a background rate (A 340 -A 405 ), 50 ⁇ M fructose- 1,6-biphosphate was added to start the reaction.
- FBPase fructose- 1,6-bisphosphatase
- the assay mixture for pyruvate kinase contained 50 mM Bicine, pH 8.0, 10 mM MgCl 2 , 20 mM KCl, 2 mM PEP, 2 mM DTT, 0.2 mM NADH, 0.5 U lactate dehydrogenase and 10 ⁇ l extract in a 250 ⁇ l total volume. After establishment of a background rate (A 340 -A 405 ), 2.0 mM ADP was added to start the reaction.
- the assay mixture for PEP carboxylase (EC 4.1.1.31) contained 50 mM Bicine, pH 8.0, 5 mM MgCl 2 , 5 mM glucose-6-P, 10 mM NaHCO 3 , 2 mM DTT, 0.2 mM NADH, 0.5 U malate dehydrogenase and 10 ⁇ l extract in a 250 ⁇ l total volume. After extablishment of a background rate (A 340 -A 405 ), 2.5 mM PEP was added to start the reaction.
- Figure 5 is a bar graph showing units of activity (y-axis) of Giardia PFP, plant PFP, PFK and FBPase for the transgenic lines PFP-1, PFP- 16, PFP-20, PFP-23, and null segregant pRD400.
- Giardia PFP was highly expressed in transgenic plants and its activity was over 50-fold higher than PFP activity in nulls. In comparison, the endogenous PFP activity was also slightly higher in the transgenic plants. PFK activity did not change.
- Antibodies were raised in CD1 female mice (Charles River Inc., St. Constant, Quebec, Canada) weighing approximately 25 grams each. Pre- imrnune serum was collected from the orbital sinus prior to the first injection. Each injection consisted of 2 ⁇ g purified Giardia PFP protein, diluted to 100 ⁇ l with sterile PBS (0.15 M NaCl, 0.01M NaPO 4 buffer pH7.4), and mixed with an equal volume (100 ⁇ l) of Ribi adjuvant. Adjuvant was obtained from RIBI ImmunoChem Research Inc., (Hamilton, Montana, USA), product R-700 MPL+TDMEMulsion, and reconstituted in 1 ml sterile PBS.
- mice were injected subcutaneously on days 0, 21 and 27. On day 34, blood was collected by cardiac puncture (approximately 1 ml). The collected blood was chilled overnight at 4°C, spun at 5000 ⁇ m in a bench top microcentrifuge for 5 minutes and the serum recovered (approximately 400 ⁇ l). Serum was stored in small aliquots at -20 °C.
- Rates of photosynthesis were measured on the youngest fully developed leaves of tobacco plants during vegetative stage of growth (before flowering, 6 weeks from planting) using an open flow gas exchange system. The methods used are described in Long and Hallgreen ("Measurements of CO 2 assimilation by plants in the fields and the laboratory", in: Hall DO, Scurlock JMO, Bolhar-Nordenkampf HR, Leegood RC, Long SP (eds) Photosynthesis and production in a changing environment, Chapman and Hall, London, 1993).
- Rates of photosynthesis were measured at light intensities of 300 ⁇ mol/meter /second (average light intensity during day growth period) and at 1200 ⁇ mol/meter /second (saturating light intensity) by measu ⁇ ng the rate of CO 2 uptake using an infra red gas analyzer (model S151, Qubit Systems Inc., Kingston, Ontario, Canada).
- the leaf was placed in a flow through leaf chamber (model Gl 12, Qubit Systems Inc.).
- the light was provided by a cold, red LED light source (model Al 13, Qubit Systems Inc., Comments, Ontario, Canada) fitted on top of the chamber.
- Temperature of the leaf was monitored using a thermister (model SI 71, Qubit Systems Inc.) placed in the bottom of the leaf chamber.
- Rates of leaf respiration in the dark were measured as CO 2 evolution rates using the set up described above for photosynthesis measurements except that the leaf cuvette was maintained in the dark by covering it with foil and a dark cloth.
- Figure 8 compares pooled data for transgenic plant lines compared to null plant lines for ambient
- Tobacco plants were grown in the greenhouse conditions in silica sand and were watered with a hydroponic nutrient solution (Plant Products Co., Brampton, Ontario, Canada). Plants were harvested at weekly intervals over a period of 5 weeks. Growth analysis was performed by measuring accumulation of dry weight of roots and shoots at different stages of plant development. Relative growth rates were calculated as described by Beadle ("The Growth Analysis", in: Hall DO, Scurlock JMO, Bolhar-Nordenkampf HR, Leegood RC, Long SP (eds) Photosynthesis and production in a changing environment, Chapman and Hall, London, 1993). From root and shoot dry weight, total dry weight and shoot to root ratios were calculated.
- Frozen ground powder from seed samples was extracted three times with a monophasic solution of chloroform: methanol: water (1 :2:0.8) as per Bligh and Dyer (1959, Can. J. Biochem. Physiol. 37:911-917). After a 5 minute centrifugation at 12,000 xg, the solvent was transferred to a fresh tube and the remaining insoluble residue containing fiber, protein and starch was dried to constant weight and weighed. Chloroform was added to the solvent to produce a biphasic solution. The aqueous-methanol phase, containing soluble carbohydrates and amino acids, and the chloroform phase, containing lipids, were separately transferred to fresh tubes. Each tube was evaporated to dryness using a vacuum desiccator and were weighed. All component weights are expressed as a percentage of the fresh weight of the original seed sample.
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