WO1998038197A1 - Protected aminosugars - Google Patents
Protected aminosugars Download PDFInfo
- Publication number
- WO1998038197A1 WO1998038197A1 PCT/AU1998/000131 AU9800131W WO9838197A1 WO 1998038197 A1 WO1998038197 A1 WO 1998038197A1 AU 9800131 W AU9800131 W AU 9800131W WO 9838197 A1 WO9838197 A1 WO 9838197A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- sugar
- synthesis
- alkyl
- substituted
- general formula
- Prior art date
Links
- 150000002337 glycosamines Chemical class 0.000 title claims abstract description 38
- 230000015572 biosynthetic process Effects 0.000 claims abstract description 48
- 238000003786 synthesis reaction Methods 0.000 claims abstract description 46
- 150000002482 oligosaccharides Chemical class 0.000 claims abstract description 29
- 229920001542 oligosaccharide Polymers 0.000 claims abstract description 25
- 150000001875 compounds Chemical class 0.000 claims abstract description 20
- 239000012071 phase Substances 0.000 claims abstract description 19
- 238000000034 method Methods 0.000 claims abstract description 16
- 150000002341 glycosylamines Chemical class 0.000 claims abstract description 11
- 239000007790 solid phase Substances 0.000 claims abstract description 11
- 239000003153 chemical reaction reagent Substances 0.000 claims abstract description 9
- 229930182474 N-glycoside Natural products 0.000 claims abstract description 6
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 54
- -1 saccharide compound Chemical class 0.000 claims description 37
- 239000011347 resin Substances 0.000 claims description 21
- 229920005989 resin Polymers 0.000 claims description 21
- 125000006239 protecting group Chemical group 0.000 claims description 16
- 235000000346 sugar Nutrition 0.000 claims description 15
- 125000000217 alkyl group Chemical group 0.000 claims description 9
- 125000005647 linker group Chemical group 0.000 claims description 9
- 229910052739 hydrogen Inorganic materials 0.000 claims description 7
- 125000003277 amino group Chemical group 0.000 claims description 6
- 238000010532 solid phase synthesis reaction Methods 0.000 claims description 6
- UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 claims description 5
- 125000003118 aryl group Chemical group 0.000 claims description 5
- 150000001720 carbohydrates Chemical class 0.000 claims description 5
- 125000000753 cycloalkyl group Chemical group 0.000 claims description 5
- 239000001257 hydrogen Substances 0.000 claims description 5
- 125000000547 substituted alkyl group Chemical group 0.000 claims description 5
- 125000003107 substituted aryl group Chemical group 0.000 claims description 5
- 125000005346 substituted cycloalkyl group Chemical group 0.000 claims description 5
- 150000002772 monosaccharides Chemical class 0.000 claims description 4
- 229940126575 aminoglycoside Drugs 0.000 claims description 2
- 125000004122 cyclic group Chemical group 0.000 claims description 2
- 239000012351 deprotecting agent Substances 0.000 claims description 2
- 150000003141 primary amines Chemical group 0.000 claims description 2
- 239000003223 protective agent Substances 0.000 claims description 2
- 239000002904 solvent Substances 0.000 claims description 2
- XRWSZZJLZRKHHD-WVWIJVSJSA-N asunaprevir Chemical compound O=C([C@@H]1C[C@H](CN1C(=O)[C@@H](NC(=O)OC(C)(C)C)C(C)(C)C)OC1=NC=C(C2=CC=C(Cl)C=C21)OC)N[C@]1(C(=O)NS(=O)(=O)C2CC2)C[C@H]1C=C XRWSZZJLZRKHHD-WVWIJVSJSA-N 0.000 claims 1
- 229940125961 compound 24 Drugs 0.000 claims 1
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 abstract description 5
- 125000006242 amine protecting group Chemical group 0.000 abstract 1
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 84
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 48
- VLKZOEOYAKHREP-UHFFFAOYSA-N n-Hexane Chemical compound CCCCCC VLKZOEOYAKHREP-UHFFFAOYSA-N 0.000 description 33
- 239000011541 reaction mixture Substances 0.000 description 32
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 30
- 238000010265 fast atom bombardment Methods 0.000 description 28
- 239000011734 sodium Substances 0.000 description 28
- 238000005481 NMR spectroscopy Methods 0.000 description 25
- 239000000243 solution Substances 0.000 description 25
- 235000019439 ethyl acetate Nutrition 0.000 description 24
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 16
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 16
- 239000000203 mixture Substances 0.000 description 15
- 125000000031 ethylamino group Chemical group [H]C([H])([H])C([H])([H])N([H])[*] 0.000 description 14
- JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 description 13
- 238000004587 chromatography analysis Methods 0.000 description 13
- QJFUSYWXWMGJHW-FYKMYLNBSA-N 2-[1-[[(2s,3r,4r,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-phenylmethoxyoxan-3-yl]amino]ethylidene]-5,5-dimethylcyclohexane-1,3-dione Chemical compound O([C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1NC(C)=C1C(CC(C)(C)CC1=O)=O)CC1=CC=CC=C1 QJFUSYWXWMGJHW-FYKMYLNBSA-N 0.000 description 10
- KDLHZDBZIXYQEI-UHFFFAOYSA-N Palladium Chemical compound [Pd] KDLHZDBZIXYQEI-UHFFFAOYSA-N 0.000 description 10
- HEDRZPFGACZZDS-MICDWDOJSA-N Trichloro(2H)methane Chemical compound [2H]C(Cl)(Cl)Cl HEDRZPFGACZZDS-MICDWDOJSA-N 0.000 description 10
- 239000000047 product Substances 0.000 description 10
- WFDIJRYMOXRFFG-UHFFFAOYSA-N Acetic anhydride Chemical compound CC(=O)OC(C)=O WFDIJRYMOXRFFG-UHFFFAOYSA-N 0.000 description 9
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 8
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 8
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 8
- ITSKWKZDPHAQNK-UHFFFAOYSA-N 2-acetyl-5,5-dimethylcyclohexane-1,3-dione Chemical compound CC(=O)C1C(=O)CC(C)(C)CC1=O ITSKWKZDPHAQNK-UHFFFAOYSA-N 0.000 description 7
- 239000000706 filtrate Substances 0.000 description 7
- 238000005160 1H NMR spectroscopy Methods 0.000 description 6
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 description 6
- WIWRBCNYMMWKAR-MLZLACJZSA-N [(2r,3s,4r,5r,6r)-3,4-diacetyloxy-6-bromo-5-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]oxan-2-yl]methyl acetate Chemical compound CC(=O)O[C@H]1[C@H](OC(C)=O)[C@@H](COC(=O)C)O[C@H](Br)[C@@H]1NC(C)=C1C(=O)CC(C)(C)CC1=O WIWRBCNYMMWKAR-MLZLACJZSA-N 0.000 description 6
- UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 description 6
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 5
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 description 5
- 238000010992 reflux Methods 0.000 description 5
- 239000000725 suspension Substances 0.000 description 5
- FRTWCAUJUJUEIL-APHBMKBZSA-N 1-[(2r,4s,5s)-4-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione Chemical compound N1([C@H]2C[C@@H]([C@H](O2)CO)NC(C)=C2C(CC(C)(C)CC2=O)=O)C=C(C)C(=O)NC1=O FRTWCAUJUJUEIL-APHBMKBZSA-N 0.000 description 4
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 4
- NQRYJNQNLNOLGT-UHFFFAOYSA-N Piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 description 4
- PKRZPAXVPXYYQF-LZEBPPIWSA-N [(2r,3s,4r,5r,6s)-3,4-diacetyloxy-5-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]-6-phenylmethoxyoxan-2-yl]methyl acetate Chemical compound O([C@H]1O[C@@H]([C@H]([C@H](OC(C)=O)[C@H]1NC(C)=C1C(CC(C)(C)CC1=O)=O)OC(C)=O)COC(=O)C)CC1=CC=CC=C1 PKRZPAXVPXYYQF-LZEBPPIWSA-N 0.000 description 4
- 238000006243 chemical reaction Methods 0.000 description 4
- WVDDGKGOMKODPV-UHFFFAOYSA-N hydroxymethyl benzene Natural products OCC1=CC=CC=C1 WVDDGKGOMKODPV-UHFFFAOYSA-N 0.000 description 4
- DRLDOGHUDNWFSK-GSZWNOCJSA-N 5,5-dimethyl-2-[1-[[(3r,4r,5r,6r)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]amino]ethylidene]cyclohexane-1,3-dione Chemical compound O=C1CC(C)(C)CC(=O)C1=C(C)N[C@H]1C(O)O[C@H](CO)[C@H](O)[C@@H]1O DRLDOGHUDNWFSK-GSZWNOCJSA-N 0.000 description 3
- DRLDOGHUDNWFSK-RKHBJWJHSA-N 5,5-dimethyl-2-[1-[[(3r,4r,5s,6r)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]amino]ethylidene]cyclohexane-1,3-dione Chemical compound O=C1CC(C)(C)CC(=O)C1=C(C)N[C@H]1C(O)O[C@H](CO)[C@@H](O)[C@@H]1O DRLDOGHUDNWFSK-RKHBJWJHSA-N 0.000 description 3
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 3
- GXAOBOFPSBLGCA-LIDDZCSYSA-N CC1(CC(C(C(C1)=O)=C(C)N[C@H]1C(O)O[C@@H]([C@H]([C@@H]1OC(C)=O)OC(C)=O)COC(C)=O)=O)C Chemical compound CC1(CC(C(C(C1)=O)=C(C)N[C@H]1C(O)O[C@@H]([C@H]([C@@H]1OC(C)=O)OC(C)=O)COC(C)=O)=O)C GXAOBOFPSBLGCA-LIDDZCSYSA-N 0.000 description 3
- QRULZYAJHCQTTF-RIMZCNCMSA-N CC1(CC(C(C(C1)=O)=C(C)N[C@H]1C(OC(C)=O)O[C@@H]([C@H]([C@@H]1OC(C)=O)OC(C)=O)COC(C)=O)=O)C Chemical compound CC1(CC(C(C(C1)=O)=C(C)N[C@H]1C(OC(C)=O)O[C@@H]([C@H]([C@@H]1OC(C)=O)OC(C)=O)COC(C)=O)=O)C QRULZYAJHCQTTF-RIMZCNCMSA-N 0.000 description 3
- MJGAYEIGPOIENP-QSMFRWBDSA-N CC1(CC(C(C(C1)=O)=C(C)N[C@H]1[C@@](OCC2=CC=CC=C2)(O[C@@H]([C@H]([C@@H]1O)O)C(OC(C)(C)C)(C)C)[SiH3])=O)C Chemical compound CC1(CC(C(C(C1)=O)=C(C)N[C@H]1[C@@](OCC2=CC=CC=C2)(O[C@@H]([C@H]([C@@H]1O)O)C(OC(C)(C)C)(C)C)[SiH3])=O)C MJGAYEIGPOIENP-QSMFRWBDSA-N 0.000 description 3
- DGAQECJNVWCQMB-PUAWFVPOSA-M Ilexoside XXIX Chemical compound C[C@@H]1CC[C@@]2(CC[C@@]3(C(=CC[C@H]4[C@]3(CC[C@@H]5[C@@]4(CC[C@@H](C5(C)C)OS(=O)(=O)[O-])C)C)[C@@H]2[C@]1(C)O)C)C(=O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O.[Na+] DGAQECJNVWCQMB-PUAWFVPOSA-M 0.000 description 3
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 3
- DKGKXBJJPLBTOQ-DHGKCCLASA-N [(2r,3s,4r,5r,6r)-5-acetamido-3,4-diacetyloxy-6-aminooxan-2-yl]methyl acetate Chemical compound CC(=O)N[C@H]1[C@H](N)O[C@H](COC(C)=O)[C@@H](OC(C)=O)[C@@H]1OC(C)=O DKGKXBJJPLBTOQ-DHGKCCLASA-N 0.000 description 3
- 235000014633 carbohydrates Nutrition 0.000 description 3
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 3
- 229930182470 glycoside Natural products 0.000 description 3
- 239000000543 intermediate Substances 0.000 description 3
- 239000012074 organic phase Substances 0.000 description 3
- 229920006395 saturated elastomer Polymers 0.000 description 3
- 229910052708 sodium Inorganic materials 0.000 description 3
- 239000007787 solid Substances 0.000 description 3
- 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 description 2
- UPQQXPKAYZYUKO-UHFFFAOYSA-N 2,2,2-trichloroacetamide Chemical compound OC(=N)C(Cl)(Cl)Cl UPQQXPKAYZYUKO-UHFFFAOYSA-N 0.000 description 2
- MSWZFWKMSRAUBD-UHFFFAOYSA-N 2-Amino-2-Deoxy-Hexose Chemical compound NC1C(O)OC(CO)C(O)C1O MSWZFWKMSRAUBD-UHFFFAOYSA-N 0.000 description 2
- IMSODMZESSGVBE-UHFFFAOYSA-N 2-Oxazoline Chemical compound C1CN=CO1 IMSODMZESSGVBE-UHFFFAOYSA-N 0.000 description 2
- TYLFUVHEZAMZOO-WQTWDYGGSA-N 2-[1-[[(2s,3r,4r,5s,6r)-4,5-dihydroxy-2-phenylmethoxy-6-(trityloxymethyl)oxan-3-yl]amino]ethylidene]-5,5-dimethylcyclohexane-1,3-dione Chemical compound C([C@@H]1[C@@H](O)[C@H](O)[C@H]([C@H](O1)OCC=1C=CC=CC=1)NC(C)=C1C(CC(C)(C)CC1=O)=O)OC(C=1C=CC=CC=1)(C=1C=CC=CC=1)C1=CC=CC=C1 TYLFUVHEZAMZOO-WQTWDYGGSA-N 0.000 description 2
- OSZUSQXEYYPINX-UHFFFAOYSA-N 2-acetyl-4-nitroindene-1,3-dione Chemical compound C1=CC([N+]([O-])=O)=C2C(=O)C(C(=O)C)C(=O)C2=C1 OSZUSQXEYYPINX-UHFFFAOYSA-N 0.000 description 2
- XBAGOEMBBZSJRP-RWLMBVHHSA-N 4-nitro-2-[1-[[(3r,4r,5s,6r)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]amino]ethylidene]indene-1,3-dione Chemical compound O=C1C2=CC=CC([N+]([O-])=O)=C2C(=O)C1=C(C)N[C@H]1C(O)O[C@H](CO)[C@@H](O)[C@@H]1O XBAGOEMBBZSJRP-RWLMBVHHSA-N 0.000 description 2
- CPELXLSAUQHCOX-UHFFFAOYSA-M Bromide Chemical compound [Br-] CPELXLSAUQHCOX-UHFFFAOYSA-M 0.000 description 2
- OAKJQQAXSVQMHS-UHFFFAOYSA-N Hydrazine Chemical compound NN OAKJQQAXSVQMHS-UHFFFAOYSA-N 0.000 description 2
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 2
- PXIPVTKHYLBLMZ-UHFFFAOYSA-N Sodium azide Chemical compound [Na+].[N-]=[N+]=[N-] PXIPVTKHYLBLMZ-UHFFFAOYSA-N 0.000 description 2
- QRULZYAJHCQTTF-KNQBKSORSA-N [(2r,3s,4r,5r,6r)-3,4,6-triacetyloxy-5-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]oxan-2-yl]methyl acetate Chemical compound CC(=O)O[C@H]1[C@H](OC(C)=O)[C@@H](COC(=O)C)O[C@H](OC(C)=O)[C@@H]1NC(C)=C1C(=O)CC(C)(C)CC1=O QRULZYAJHCQTTF-KNQBKSORSA-N 0.000 description 2
- GXAOBOFPSBLGCA-MLZLACJZSA-N [(2r,3s,4r,5r,6s)-3,4-diacetyloxy-5-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]-6-hydroxyoxan-2-yl]methyl acetate Chemical compound CC(=O)O[C@H]1[C@H](OC(C)=O)[C@@H](COC(=O)C)O[C@H](O)[C@@H]1NC(C)=C1C(=O)CC(C)(C)CC1=O GXAOBOFPSBLGCA-MLZLACJZSA-N 0.000 description 2
- CGWVAQMLSHXXQE-DVKNGEFBSA-N [(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] 2,2,2-trichloroethanimidate Chemical compound OC[C@H]1O[C@@H](OC(=N)C(Cl)(Cl)Cl)[C@H](O)[C@@H](O)[C@@H]1O CGWVAQMLSHXXQE-DVKNGEFBSA-N 0.000 description 2
- GXOGCLRUURZNPR-CQYOJLLZSA-N [amino-[(2s,3r,4r,5s,6r)-4,5-diacetyloxy-6-(acetyloxymethyl)-3-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]oxan-2-yl]sulfanylmethylidene]azanium;bromide Chemical compound [Br-].CC(=O)O[C@H]1[C@H](OC(C)=O)[C@@H](COC(=O)C)O[C@@H](SC(N)=[NH2+])[C@@H]1NC(C)=C1C(=O)CC(C)(C)CC1=O GXOGCLRUURZNPR-CQYOJLLZSA-N 0.000 description 2
- 239000000370 acceptor Substances 0.000 description 2
- YRKCREAYFQTBPV-UHFFFAOYSA-N acetylacetone Chemical compound CC(=O)CC(C)=O YRKCREAYFQTBPV-UHFFFAOYSA-N 0.000 description 2
- 150000001408 amides Chemical class 0.000 description 2
- HUMNYLRZRPPJDN-UHFFFAOYSA-N benzaldehyde Chemical compound O=CC1=CC=CC=C1 HUMNYLRZRPPJDN-UHFFFAOYSA-N 0.000 description 2
- 235000019445 benzyl alcohol Nutrition 0.000 description 2
- 229960002246 beta-d-glucopyranose Drugs 0.000 description 2
- SKCNIGRBPJIUBQ-UHFFFAOYSA-N chloroform;ethyl acetate Chemical compound ClC(Cl)Cl.CCOC(C)=O SKCNIGRBPJIUBQ-UHFFFAOYSA-N 0.000 description 2
- 238000010511 deprotection reaction Methods 0.000 description 2
- 230000000694 effects Effects 0.000 description 2
- 238000004992 fast atom bombardment mass spectroscopy Methods 0.000 description 2
- 150000002338 glycosides Chemical class 0.000 description 2
- 230000013595 glycosylation Effects 0.000 description 2
- 238000006206 glycosylation reaction Methods 0.000 description 2
- BDAGIHXWWSANSR-UHFFFAOYSA-N methanoic acid Natural products OC=O BDAGIHXWWSANSR-UHFFFAOYSA-N 0.000 description 2
- 125000000956 methoxy group Chemical group [H]C([H])([H])O* 0.000 description 2
- 230000004048 modification Effects 0.000 description 2
- 238000012986 modification Methods 0.000 description 2
- SHDMMLFAFLZUEV-UHFFFAOYSA-N n-methyl-1,1-diphenylmethanamine Chemical compound C=1C=CC=CC=1C(NC)C1=CC=CC=C1 SHDMMLFAFLZUEV-UHFFFAOYSA-N 0.000 description 2
- 150000002918 oxazolines Chemical class 0.000 description 2
- NFHFRUOZVGFOOS-UHFFFAOYSA-N palladium;triphenylphosphane Chemical compound [Pd].C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1 NFHFRUOZVGFOOS-UHFFFAOYSA-N 0.000 description 2
- 238000010647 peptide synthesis reaction Methods 0.000 description 2
- XKJCHHZQLQNZHY-UHFFFAOYSA-N phthalimide Chemical compound C1=CC=C2C(=O)NC(=O)C2=C1 XKJCHHZQLQNZHY-UHFFFAOYSA-N 0.000 description 2
- 125000005543 phthalimide group Chemical group 0.000 description 2
- NROKBHXJSPEDAR-UHFFFAOYSA-M potassium fluoride Chemical compound [F-].[K+] NROKBHXJSPEDAR-UHFFFAOYSA-M 0.000 description 2
- UMGDCJDMYOKAJW-UHFFFAOYSA-N thiourea Chemical compound NC(N)=S UMGDCJDMYOKAJW-UHFFFAOYSA-N 0.000 description 2
- FHWVABAZBHDMEY-ZXPJVPCYSA-N (2s,3s,4s,5r,6s)-3,4,5,6-tetraacetyloxyoxane-2-carboxylic acid Chemical compound CC(=O)O[C@@H]1O[C@H](C(O)=O)[C@@H](OC(C)=O)[C@H](OC(C)=O)[C@H]1OC(C)=O FHWVABAZBHDMEY-ZXPJVPCYSA-N 0.000 description 1
- AXKGIPZJYUNAIW-UHFFFAOYSA-N (4-aminophenyl)methanol Chemical compound NC1=CC=C(CO)C=C1 AXKGIPZJYUNAIW-UHFFFAOYSA-N 0.000 description 1
- 125000004178 (C1-C4) alkyl group Chemical group 0.000 description 1
- WSLDOOZREJYCGB-UHFFFAOYSA-N 1,2-Dichloroethane Chemical compound ClCCCl WSLDOOZREJYCGB-UHFFFAOYSA-N 0.000 description 1
- HEWZVZIVELJPQZ-UHFFFAOYSA-N 2,2-dimethoxypropane Chemical compound COC(C)(C)OC HEWZVZIVELJPQZ-UHFFFAOYSA-N 0.000 description 1
- GQHTUMJGOHRCHB-UHFFFAOYSA-N 2,3,4,6,7,8,9,10-octahydropyrimido[1,2-a]azepine Chemical compound C1CCCCN2CCCN=C21 GQHTUMJGOHRCHB-UHFFFAOYSA-N 0.000 description 1
- 125000001917 2,4-dinitrophenyl group Chemical group [H]C1=C([H])C(=C([H])C(=C1*)[N+]([O-])=O)[N+]([O-])=O 0.000 description 1
- IZXIZTKNFFYFOF-UHFFFAOYSA-N 2-Oxazolidone Chemical compound O=C1NCCO1 IZXIZTKNFFYFOF-UHFFFAOYSA-N 0.000 description 1
- OBLVKLZSEKNRJU-GDFOLFDLSA-N 2-[1-[[(2s,3r,4r,5s,6r)-6-[[tert-butyl(dimethyl)silyl]oxymethyl]-4,5-dihydroxy-2-phenylmethoxyoxan-3-yl]amino]ethylidene]-5,5-dimethylcyclohexane-1,3-dione Chemical compound O([C@H]1O[C@H](CO[Si](C)(C)C(C)(C)C)[C@@H](O)[C@H](O)[C@H]1NC(C)=C1C(CC(C)(C)CC1=O)=O)CC1=CC=CC=C1 OBLVKLZSEKNRJU-GDFOLFDLSA-N 0.000 description 1
- OSWFIVFLDKOXQC-UHFFFAOYSA-N 4-(3-methoxyphenyl)aniline Chemical compound COC1=CC=CC(C=2C=CC(N)=CC=2)=C1 OSWFIVFLDKOXQC-UHFFFAOYSA-N 0.000 description 1
- 125000004042 4-aminobutyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])N([H])[H] 0.000 description 1
- XZXLYGAUEAPJET-UHFFFAOYSA-N 5-amino-3h-1-benzofuran-2-one Chemical compound NC1=CC=C2OC(=O)CC2=C1 XZXLYGAUEAPJET-UHFFFAOYSA-N 0.000 description 1
- HERAYSFWDQGWFH-YMQHIKHWSA-N C(C1=CC=CC=C1)[C@]1(OC(C)=O)[C@H](OC(C)=O)[C@@H](OC(C)=O)[C@H](OC(C)=O)[C@H](O1)CO Chemical compound C(C1=CC=CC=C1)[C@]1(OC(C)=O)[C@H](OC(C)=O)[C@@H](OC(C)=O)[C@H](OC(C)=O)[C@H](O1)CO HERAYSFWDQGWFH-YMQHIKHWSA-N 0.000 description 1
- QOSSAOTZNIDXMA-UHFFFAOYSA-N Dicylcohexylcarbodiimide Chemical compound C1CCCCC1N=C=NC1CCCCC1 QOSSAOTZNIDXMA-UHFFFAOYSA-N 0.000 description 1
- 108010015899 Glycopeptides Proteins 0.000 description 1
- 102000002068 Glycopeptides Human genes 0.000 description 1
- 229920002683 Glycosaminoglycan Polymers 0.000 description 1
- CPELXLSAUQHCOX-UHFFFAOYSA-N Hydrogen bromide Chemical compound Br CPELXLSAUQHCOX-UHFFFAOYSA-N 0.000 description 1
- 206010028980 Neoplasm Diseases 0.000 description 1
- 101100054666 Streptomyces halstedii sch3 gene Proteins 0.000 description 1
- 229910021627 Tin(IV) chloride Inorganic materials 0.000 description 1
- DRUIESSIVFYOMK-UHFFFAOYSA-N Trichloroacetonitrile Chemical compound ClC(Cl)(Cl)C#N DRUIESSIVFYOMK-UHFFFAOYSA-N 0.000 description 1
- XSQUKJJJFZCRTK-UHFFFAOYSA-N Urea Natural products NC(N)=O XSQUKJJJFZCRTK-UHFFFAOYSA-N 0.000 description 1
- HCHKCACWOHOZIP-UHFFFAOYSA-N Zinc Chemical compound [Zn] HCHKCACWOHOZIP-UHFFFAOYSA-N 0.000 description 1
- WOTQVEKSRLZRSX-HHZNOXSWSA-N [(2r,3r,4s,5r,6s)-4,5,6-triacetyloxy-3-[(2s,3r,4s,5s,6r)-3,4,5-triacetyloxy-6-(acetyloxymethyl)oxan-2-yl]oxyoxan-2-yl]methyl acetate Chemical compound CC(=O)OC[C@H]1O[C@@H](OC(C)=O)[C@H](OC(C)=O)[C@@H](OC(C)=O)[C@@H]1O[C@H]1[C@H](OC(C)=O)[C@@H](OC(C)=O)[C@@H](OC(C)=O)[C@@H](COC(C)=O)O1 WOTQVEKSRLZRSX-HHZNOXSWSA-N 0.000 description 1
- FQEKUPPRPAMKLL-FYKMYLNBSA-N [(2r,3s,4r,5r,6s)-3,4-diacetyloxy-5-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethylamino]-6-methoxyoxan-2-yl]methyl acetate Chemical compound CO[C@H]1O[C@H](COC(C)=O)[C@@H](OC(C)=O)[C@H](OC(C)=O)[C@H]1NC(C)=C1C(=O)CC(C)(C)CC1=O FQEKUPPRPAMKLL-FYKMYLNBSA-N 0.000 description 1
- NZHXEWZGTQSYJM-UHFFFAOYSA-N [bromo(diphenyl)methyl]benzene Chemical compound C=1C=CC=CC=1C(C=1C=CC=CC=1)(Br)C1=CC=CC=C1 NZHXEWZGTQSYJM-UHFFFAOYSA-N 0.000 description 1
- 125000002777 acetyl group Chemical group [H]C([H])([H])C(*)=O 0.000 description 1
- 230000004075 alteration Effects 0.000 description 1
- MDFFNEOEWAXZRQ-UHFFFAOYSA-N aminyl Chemical compound [NH2] MDFFNEOEWAXZRQ-UHFFFAOYSA-N 0.000 description 1
- 239000000427 antigen Substances 0.000 description 1
- 102000036639 antigens Human genes 0.000 description 1
- 108091007433 antigens Proteins 0.000 description 1
- CKLJMWTZIZZHCS-REOHCLBHSA-N aspartic acid group Chemical group N[C@@H](CC(=O)O)C(=O)O CKLJMWTZIZZHCS-REOHCLBHSA-N 0.000 description 1
- IVRMZWNICZWHMI-UHFFFAOYSA-N azide group Chemical group [N-]=[N+]=[N-] IVRMZWNICZWHMI-UHFFFAOYSA-N 0.000 description 1
- 125000000852 azido group Chemical group *N=[N+]=[N-] 0.000 description 1
- 230000001580 bacterial effect Effects 0.000 description 1
- 125000000649 benzylidene group Chemical group [H]C(=[*])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 210000004369 blood Anatomy 0.000 description 1
- 239000008280 blood Substances 0.000 description 1
- 239000012267 brine Substances 0.000 description 1
- 125000000484 butyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- MIOPJNTWMNEORI-UHFFFAOYSA-N camphorsulfonic acid Chemical compound C1CC2(CS(O)(=O)=O)C(=O)CC1C2(C)C MIOPJNTWMNEORI-UHFFFAOYSA-N 0.000 description 1
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 description 1
- 238000007385 chemical modification Methods 0.000 description 1
- 239000003795 chemical substances by application Substances 0.000 description 1
- 239000000470 constituent Substances 0.000 description 1
- 238000000354 decomposition reaction Methods 0.000 description 1
- 239000012895 dilution Substances 0.000 description 1
- 238000010790 dilution Methods 0.000 description 1
- BADXJIPKFRBFOT-UHFFFAOYSA-N dimedone Chemical class CC1(C)CC(=O)CC(=O)C1 BADXJIPKFRBFOT-UHFFFAOYSA-N 0.000 description 1
- OCLXJTCGWSSVOE-UHFFFAOYSA-N ethanol etoh Chemical compound CCO.CCO OCLXJTCGWSSVOE-UHFFFAOYSA-N 0.000 description 1
- 235000019253 formic acid Nutrition 0.000 description 1
- 125000002485 formyl group Chemical group [H]C(*)=O 0.000 description 1
- 150000002243 furanoses Chemical group 0.000 description 1
- 239000000937 glycosyl acceptor Substances 0.000 description 1
- 229910052736 halogen Inorganic materials 0.000 description 1
- 150000002367 halogens Chemical class 0.000 description 1
- 238000010438 heat treatment Methods 0.000 description 1
- 235000020256 human milk Nutrition 0.000 description 1
- 210000004251 human milk Anatomy 0.000 description 1
- 125000000717 hydrazino group Chemical group [H]N([*])N([H])[H] 0.000 description 1
- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 1
- INQOMBQAUSQDDS-UHFFFAOYSA-N iodomethane Chemical compound IC INQOMBQAUSQDDS-UHFFFAOYSA-N 0.000 description 1
- 125000001972 isopentyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])C([H])([H])* 0.000 description 1
- 229910052943 magnesium sulfate Inorganic materials 0.000 description 1
- 230000001404 mediated effect Effects 0.000 description 1
- COTNUBDHGSIOTA-UHFFFAOYSA-N meoh methanol Chemical compound OC.OC COTNUBDHGSIOTA-UHFFFAOYSA-N 0.000 description 1
- 239000000178 monomer Substances 0.000 description 1
- SKOZFDIGKDPQBO-UHFFFAOYSA-N n-[4,5-dihydroxy-6-(hydroxymethyl)-2-phenylmethoxyoxan-3-yl]acetamide Chemical compound CC(=O)NC1C(O)C(O)C(CO)OC1OCC1=CC=CC=C1 SKOZFDIGKDPQBO-UHFFFAOYSA-N 0.000 description 1
- 230000009935 nitrosation Effects 0.000 description 1
- 238000007034 nitrosation reaction Methods 0.000 description 1
- 239000003960 organic solvent Substances 0.000 description 1
- QNGNSVIICDLXHT-UHFFFAOYSA-N para-ethylbenzaldehyde Natural products CCC1=CC=C(C=O)C=C1 QNGNSVIICDLXHT-UHFFFAOYSA-N 0.000 description 1
- 125000005544 phthalimido group Chemical group 0.000 description 1
- CHKVPAROMQMJNQ-UHFFFAOYSA-M potassium bisulfate Chemical compound [K+].OS([O-])(=O)=O CHKVPAROMQMJNQ-UHFFFAOYSA-M 0.000 description 1
- 229910000343 potassium bisulfate Inorganic materials 0.000 description 1
- 239000011698 potassium fluoride Substances 0.000 description 1
- 235000003270 potassium fluoride Nutrition 0.000 description 1
- 239000002243 precursor Substances 0.000 description 1
- 230000002028 premature Effects 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 235000018102 proteins Nutrition 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 150000003839 salts Chemical class 0.000 description 1
- QRUBYZBWAOOHSV-UHFFFAOYSA-M silver trifluoromethanesulfonate Chemical compound [Ag+].[O-]S(=O)(=O)C(F)(F)F QRUBYZBWAOOHSV-UHFFFAOYSA-M 0.000 description 1
- 229910000030 sodium bicarbonate Inorganic materials 0.000 description 1
- 239000012279 sodium borohydride Substances 0.000 description 1
- 229910000033 sodium borohydride Inorganic materials 0.000 description 1
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical compound O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 1
- 239000006104 solid solution Substances 0.000 description 1
- 125000006850 spacer group Chemical group 0.000 description 1
- 238000003756 stirring Methods 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 125000001424 substituent group Chemical group 0.000 description 1
- 125000000565 sulfonamide group Chemical group 0.000 description 1
- BCNZYOJHNLTNEZ-UHFFFAOYSA-N tert-butyldimethylsilyl chloride Chemical compound CC(C)(C)[Si](C)(C)Cl BCNZYOJHNLTNEZ-UHFFFAOYSA-N 0.000 description 1
- 125000005931 tert-butyloxycarbonyl group Chemical group [H]C([H])([H])C(OC(*)=O)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- HPGGPRDJHPYFRM-UHFFFAOYSA-J tin(iv) chloride Chemical compound Cl[Sn](Cl)(Cl)Cl HPGGPRDJHPYFRM-UHFFFAOYSA-J 0.000 description 1
- 238000006276 transfer reaction Methods 0.000 description 1
- SEDZOYHHAIAQIW-UHFFFAOYSA-N trimethylsilyl azide Chemical compound C[Si](C)(C)N=[N+]=[N-] SEDZOYHHAIAQIW-UHFFFAOYSA-N 0.000 description 1
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- HBOMLICNUCNMMY-XLPZGREQSA-N zidovudine Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](CO)[C@@H](N=[N+]=[N-])C1 HBOMLICNUCNMMY-XLPZGREQSA-N 0.000 description 1
- 239000011701 zinc Substances 0.000 description 1
- 229910052725 zinc Inorganic materials 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
- C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
- C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
- C07H19/06—Pyrimidine radicals
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H15/00—Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
- C07H15/18—Acyclic radicals, substituted by carbocyclic rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H3/00—Compounds containing only hydrogen atoms and saccharide radicals having only carbon, hydrogen, and oxygen atoms
- C07H3/06—Oligosaccharides, i.e. having three to five saccharide radicals attached to each other by glycosidic linkages
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02P—CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
- Y02P20/00—Technologies relating to chemical industry
- Y02P20/50—Improvements relating to the production of bulk chemicals
- Y02P20/55—Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups
Definitions
- This invention relates to methods for synthesis of oligosaccharides , especially those oligosaccharides which comprise amino sugar residues.
- the invention relates to methods for solution phase, solid phase or combinatorial synthesis of oligosaccharides.
- Aminosugars are important constituents of various glycoconjugates (Schmidt and Kinzy, 1994). Examples include peptidoglycans, mucopolysaccharides, glycopeptides and proteins, oligosaccharides of human milk, and blood group determinants . They are often also encountered in bacterial and tumour-associated carbohydrate antigens, predominantly in the N-acetylated form or N-acylated with an aspartic acid residue (Toyokuni and Singhal, 1995) . It is therefore evident that these biological glycoconjugates are of immense interest to the medicinal chemist, and therefore that there is a great need in the art to be able to synthesise these compounds in a facile and cost- effective manner.
- Oligosaccharide synthesis using aminosugars requires the presence of a suitable amino protecting group.
- a number of protecting groups have been proposed, but so far all of the agents which are available suffer from serious disadvantages. For example, glycosylation with donors derived from 2-N-acetyl protected aminosugars proceeds via neighbouring group participation; however, formation of the relatively stable oxazoline intermediate dramatically reduces the overall speed and yield of the reaction (Zurabyan et al , 1994) .
- the major disadvantage of using the phthalimide group lies in the vigorous conditions required for its removal, namely heating with methanolic hydrazine, which often results in partial product decomposition. Strongly basic conditions are also required for the removal of the N-sul fonyl (Griffith and Danishefsky, 1990) and N- haloacetyl protecting groups (Shapiro et al , 1967), resulting in similar problems .
- the allyloxycarbonyl (Alloc) protected amino sugar donors display a similar activity to their phthalimide counterparts when employed under Lewis acid- catalysed conditions.
- the Alloc group has the advantage that it can be removed under extremely mild conditions, using tetrakis (triphenylphosphine) palladium in the presence of a mild base (Hayakawa et al , 1986) .
- the major disadvantage associated with the Alloc group lies in its ability to form a stable oxazolidinone intermediate, which in the presence of unreactive acceptors tends to remain as the major product, and reduces the speed and yield of the reaction (Boullanger et al , 1987).
- 2,2,2- Trichloroethyl-protected aminosugars contain a strongly participating group that, unlike phthalimide, does not deactivate adjacent hydroxyl groups which may subsequently be required as glycosyl acceptors . They can be removed under relatively mild and selective conditions, using zinc and acetic acid, and do not form oxazoline intermediates during glycosylation.
- this protecting group has the disadvantage that benzyl groups cannot be introduced without premature loss of the protecting group as well (Imoto et al , 1987) .
- Tetrachlorophthaloyl-protected aminosugar donors have been demonstrated to afford high yields of 1 , 2 - trans- glycosides (Castro-Palomino and Schmidt, 1995), even in the presence of poorly reactive acceptors. Once more, however, the NaBH4-mediated deprotection is the limiting factor for this particular protecting group.
- the azide group has received much attention in aminosugar chemistry, since it serves as a masked, non- participating amino functionality, thereby allowing the synthesis of 1, 2-cis-linked 2-amino-2-deoxy glycosides (Palsen, 1982).
- Non-participating protecting groups that have been reported are 2 , 4-dinitrophenyl (Kaifu and Osawa, 1977) and p-methoxybenzylimino (Mootoo and Fraser-Reid, 1989) , both of which are complicated to introduce and require harsh deprotection conditions which result in loss of product .
- a hydrazine-labile primary amino-protecting group N-l- (4, 4-dimethyl-2 , 6-dioxocyclohexylidene) ethyl (Dde) , has been reported for protection of lysine side chains during SPPS (Bycroft et al , 1993) .
- This group was modified for use as a carboxy-protecting group in SPPS when the 2- (3-methylbutyryl ) dimedone analogue of 2-acetyldimedone was condensed with 4-aminobenzylalcohol to afford 4- [N- [1- (4, 4-dimethyl-2 , 6-dioxocyclo-hexylidene) -3- methylbutyl] -amino ⁇ benzyl ester (ODmab) (Chan et al , 1995).
- These two protecting groups were reported to be stable to the Fmoc deprotecting conditions widely used in solid phase peptide synthesis (SPPS) , ie 20% piperidine in dimethylformamide (DMF) .
- Dde has been widely used in the field of SPPS as an orthogonal amino protecting group to the well established Fmoc/t-Boc methodology (Fields and Noble, 1990) . Until now its use has remained within this area, and therefore its use as a protecting group in the field of carbohydrate chemistry is novel. In particular, the use of Dde or ODMab in oligosaccharide synthesis has not been suggested.
- Dde can be used as a non-participating amino sugar protecting group, which can be introduced and removed in a facile and cost- effective manner.
- the vinylogous amide protection afforded by the Dde type group is achieved by simply refluxing the unprotected amino sugar with the precursor, eg. 2-acetyldimedone in the case of Dde, in anhydrous ethanol .
- the precursor eg. 2-acetyldimedone in the case of Dde
- the invention provides a compound useful as a reagent for solution and/or solid phase synthesis of sugar-containing compounds, comprising a sugar carrying one or more primary amine groups protected with a 2-substituted-l, 3-dioxo compound of General Formula I or General Formula II :
- R 1 and R 2 may be the same or different, and is each hydrogen or C 1 - 4 alkyl
- R' is an amino sugar, a glycosylamine, or an oligosaccharide comprising at least one aminosugar or one glycosylamine unit, in which the sugar is coupled via an amino group
- R" is alkyl, substituted alkyl, aryl, substituted aryl, cycloalkyl or substituted cycloalkyl .
- Any sugar or oligosaccharide bearing an amino group may be used.
- the invention provides a reagent for solution phase synthesis of sugar-containing compounds, comprising a cyclic 2-substituted-l, 3-dioxo compound of General Formula I or II as defined above, in which R' is as defined above.
- the compounds of the invention are suitable for use in methods of solid-phase oligosaccharide synthesis, in which sugar units are covalently linked to a resin.
- Any suitable linker compound may be used.
- the covalent linkage to the resin may suitably be provided by a
- PCT/AU97/00544 filed on 26 August 1997 are suitable for use with the compounds of this invention.
- the entire disclosure of PCT/AU97/00544 is incorporated herein by this cross-reference.
- These linker systems enable solid phase synthesis of oligosaccharides under mild conditions analogous to those used for SPPS.
- the resin may be any resin which swells in water and/or in an organic solvent, and which comprises one of the following substituents : halogen, hydroxy, carboxyl , SH, NH 2 , formyl, S0 2 NH 2 , or NHNH 2 , for example methylbenzhydrylamine (MBHA) resin, amino or carboxy tentagel resins, paraaminomethylbenzyl (PAM) resin, or 4-sulphamylbenzyl AM resin.
- MBHA methylbenzhydrylamine
- PAM paraaminomethylbenzyl
- 4-sulphamylbenzyl AM resin 4-sulphamylbenzyl AM resin.
- suitable resins will be known to those skilled in the art .
- the invention provides a linker-saccharide complex, comprising a linker group and a saccharide compound comprising a protecting group of general formula I or II as defined above, in which the group R' is as defined above.
- the invention provides a resin- linker-saccharide support for solid-phase oligosaccharide synthesis, comprising a linker group, a resin, and a starting saccharide compound comprising a protecting group of General Formula I or General Formula II as defined above, in which the group R 1 is as defined above.
- linkers Any suitable linker may be used. Again, it is contemplated that linkers and methods described in PCT/AU97/00544 may be used.
- the invention provides a method of solid-phase synthesis of oligosaccharides, comprising the step of sequentially linking mono- or oligosaccharide groups, one or more of which is protected as described above, to a resin-linker-saccharide support as described above.
- the invention provides a method of solution phase synthesis of oligosaccharides, comprising the step of sequentially linking mono- or oligosaccharide groups to a linker-saccharide complex as described above. These methods are particularly useful for combinatorial synthetic applications.
- the solid phase or solution phase method of the invention may, for example, be used for combinatorial synthesis of aminoglycoside compounds. It will be appreciated that the sequential linkage may be effected either enzymically or by chemical means .
- the invention also provides a kit for solid phase synthesis, solution phase synthesis, or combinatorial synthesis of oligosaccharides, comprising a linker- saccharide complex or a resin-linker-saccharide support according to the invention, as described above.
- the kit may optionally also comprise one or more further reagents such as partially or differentially activated, fully protected saccharides, protecting agents, deprotecting agents, resins and/or solvents suitable for solid phase or combinatorial synthesis.
- suitable further reagents can then be chosen according to the desired use .
- Trt trityl The invention will now be described in detail by way of reference only to the following non-limiting examples, in which the structures of individual compounds are as summarised in the following tables.
- 2-Acetamido-2-deoxy-3 4, 6-tri-O-acetyl- ⁇ -D- glucopyranosyl azide (100 mg, 0.26 mmol) was dissolved in MeOH (5 ml) and hydrogenated over Pd/C (10%) (10 mg) for 5 h. The suspension was filtered, and the filtrate was evaporated to give 2-Acetamido-2-deoxy-3 , 4, 6-tri-O-acetyl- ⁇ -D-glucopyranosyl amine (18) (80 mg, 86%) .
- Boullanger P., Banoub, J. and Descotes, G. Can. J. Chem. , 1987 65 1343.
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Saccharide Compounds (AREA)
Abstract
Description
Claims
Priority Applications (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US09/380,194 US6462183B1 (en) | 1997-02-28 | 1998-02-27 | Protected aminosugars |
CA002282789A CA2282789A1 (en) | 1997-02-28 | 1998-02-27 | Protected aminosugars |
JP53708198A JP2001513089A (en) | 1997-02-28 | 1998-02-27 | Protected amino sugar |
EP98905150A EP0977763A4 (en) | 1997-02-28 | 1998-02-27 | Protected aminosugars |
AU60823/98A AU730910B2 (en) | 1997-02-28 | 1998-02-27 | Protected aminosugars |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AUPO5367 | 1997-02-28 | ||
AUPO5367A AUPO536797A0 (en) | 1997-02-28 | 1997-02-28 | Protected aminosugars |
Publications (1)
Publication Number | Publication Date |
---|---|
WO1998038197A1 true WO1998038197A1 (en) | 1998-09-03 |
Family
ID=3799670
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/AU1998/000131 WO1998038197A1 (en) | 1997-02-28 | 1998-02-27 | Protected aminosugars |
Country Status (8)
Country | Link |
---|---|
US (1) | US6462183B1 (en) |
EP (1) | EP0977763A4 (en) |
JP (1) | JP2001513089A (en) |
CN (1) | CN1248976A (en) |
AU (1) | AUPO536797A0 (en) |
CA (1) | CA2282789A1 (en) |
HU (1) | HUP0000819A3 (en) |
WO (1) | WO1998038197A1 (en) |
Cited By (9)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1999015510A1 (en) * | 1997-09-24 | 1999-04-01 | Alchemia Pty. Ltd. | Protecting and linking groups for organic synthesis |
WO2002032915A1 (en) * | 2000-10-17 | 2002-04-25 | Alchemia Pty Ltd | Combinatorial libraries of monosaccharides |
US6579725B1 (en) | 1999-03-05 | 2003-06-17 | Massachusetts Institute Of Technology | Linkers for synthesis of oligosaccharides on solid supports |
WO2003093286A1 (en) * | 2002-05-03 | 2003-11-13 | Alchemia Limited | Disaccharides for drug discovery |
US6765089B1 (en) | 1997-09-24 | 2004-07-20 | Alchemia Pty Ltd | Protecting and linking groups for organic synthesis on solid supports |
US6953850B1 (en) | 1999-01-18 | 2005-10-11 | Alchemia Pty. Ltd. | Protecting groups for carbohydrate synthesis |
US7700577B2 (en) | 2002-10-17 | 2010-04-20 | Alchemia Limited | Carbohydrate based anti-bacterials |
WO2019238970A1 (en) | 2018-06-15 | 2019-12-19 | Carbocode S.A. | Sphingosine/sphingoid base production |
WO2019238965A1 (en) | 2018-06-15 | 2019-12-19 | Carbocode S.A. | Glycosylated sphingoid bases and production thereof |
Families Citing this family (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
AUPO190596A0 (en) * | 1996-08-26 | 1996-09-19 | Alchemia Pty Ltd | Oligosaccharide synthesis |
US6576224B1 (en) * | 1999-07-06 | 2003-06-10 | Sinuspharma, Inc. | Aerosolized anti-infectives, anti-inflammatories, and decongestants for the treatment of sinusitis |
US20020061281A1 (en) * | 1999-07-06 | 2002-05-23 | Osbakken Robert S. | Aerosolized anti-infectives, anti-inflammatories, and decongestants for the treatment of sinusitis |
ATE498629T1 (en) * | 2006-03-13 | 2011-03-15 | Glycom Aps | NEW LACTOSAMINE DERIVATIVES |
WO2011014793A2 (en) | 2009-07-31 | 2011-02-03 | Reliable Biopharmaceutical Corporation | Process for preparing fondaparinux sodium and intermediates useful in the synthesis thereof |
US8420790B2 (en) | 2009-10-30 | 2013-04-16 | Reliable Biopharmaceutical Corporation | Efficient and scalable process for the manufacture of Fondaparinux sodium |
Citations (1)
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AU3842297A (en) * | 1996-08-26 | 1998-03-19 | Alchemia Pty Ltd | Oligosaccharide synthesis |
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US4062950A (en) | 1973-09-22 | 1977-12-13 | Bayer Aktiengesellschaft | Amino sugar derivatives |
US5959109A (en) | 1996-05-15 | 1999-09-28 | Neurocrine Biosciences, Inc. | Compounds and methods for increasing endogenous levels of corticotropin-releasing factor |
AUPO190596A0 (en) * | 1996-08-26 | 1996-09-19 | Alchemia Pty Ltd | Oligosaccharide synthesis |
-
1997
- 1997-02-28 AU AUPO5367A patent/AUPO536797A0/en not_active Abandoned
-
1998
- 1998-02-27 JP JP53708198A patent/JP2001513089A/en active Pending
- 1998-02-27 EP EP98905150A patent/EP0977763A4/en not_active Withdrawn
- 1998-02-27 CA CA002282789A patent/CA2282789A1/en not_active Abandoned
- 1998-02-27 WO PCT/AU1998/000131 patent/WO1998038197A1/en not_active Application Discontinuation
- 1998-02-27 US US09/380,194 patent/US6462183B1/en not_active Expired - Lifetime
- 1998-02-27 HU HU0000819A patent/HUP0000819A3/en unknown
- 1998-02-27 CN CN98802900A patent/CN1248976A/en active Pending
Patent Citations (1)
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AU3842297A (en) * | 1996-08-26 | 1998-03-19 | Alchemia Pty Ltd | Oligosaccharide synthesis |
Non-Patent Citations (4)
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"A Novel Lysine - Protecting Procedure for Continuous Flow Solid Phase Synthesis of Branched Peptides", J. CHEM. SOC., CHEM. COMMUN., 1993, (9), pages 778-9. * |
I.A. NASH et al., "Dde - A Selective Primary Amine Protecting Group: A Facile Solid Phase Synthetic Approach to Polyamine Conjugates", TETRAHEDRON LETTERS, 1996, 37(15), pages 2625-2628. * |
See also references of EP0977763A4 * |
W.C. CHAN et al., "Novel Protecting Group for Fmoc/tBu Solid-Phase Synthesis of Side-Chain Carboxy-Modified Peptides", PEPT. 1994, PROC. EUR. PEPT. SYMP., 23rd, (1995), Meeting Date 1994, pages 153-154. * |
Cited By (14)
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US6765089B1 (en) | 1997-09-24 | 2004-07-20 | Alchemia Pty Ltd | Protecting and linking groups for organic synthesis on solid supports |
WO1999015510A1 (en) * | 1997-09-24 | 1999-04-01 | Alchemia Pty. Ltd. | Protecting and linking groups for organic synthesis |
US6953850B1 (en) | 1999-01-18 | 2005-10-11 | Alchemia Pty. Ltd. | Protecting groups for carbohydrate synthesis |
US6579725B1 (en) | 1999-03-05 | 2003-06-17 | Massachusetts Institute Of Technology | Linkers for synthesis of oligosaccharides on solid supports |
US8093227B2 (en) | 2000-10-17 | 2012-01-10 | Alchemia Pty Ltd | Monosaccharide compounds and methods therefor |
US7417129B2 (en) | 2000-10-17 | 2008-08-26 | Alchemia Pty Ltd | Combinatorial libraries of monosaccharides |
WO2002032915A1 (en) * | 2000-10-17 | 2002-04-25 | Alchemia Pty Ltd | Combinatorial libraries of monosaccharides |
WO2003093286A1 (en) * | 2002-05-03 | 2003-11-13 | Alchemia Limited | Disaccharides for drug discovery |
US7875707B2 (en) | 2002-05-03 | 2011-01-25 | Alchemia Limited | Disaccharides for drug discovery |
US7700577B2 (en) | 2002-10-17 | 2010-04-20 | Alchemia Limited | Carbohydrate based anti-bacterials |
WO2019238970A1 (en) | 2018-06-15 | 2019-12-19 | Carbocode S.A. | Sphingosine/sphingoid base production |
WO2019238965A1 (en) | 2018-06-15 | 2019-12-19 | Carbocode S.A. | Glycosylated sphingoid bases and production thereof |
US11820789B2 (en) | 2018-06-15 | 2023-11-21 | Carbocode S.A. | Glycosylated sphingoid bases and production thereof |
US12054462B2 (en) | 2018-06-15 | 2024-08-06 | Carbocode S.A. | Sphingosine/sphingoid base production |
Also Published As
Publication number | Publication date |
---|---|
EP0977763A1 (en) | 2000-02-09 |
US6462183B1 (en) | 2002-10-08 |
HUP0000819A3 (en) | 2001-02-28 |
EP0977763A4 (en) | 2000-07-12 |
JP2001513089A (en) | 2001-08-28 |
HUP0000819A2 (en) | 2000-07-28 |
AUPO536797A0 (en) | 1997-03-20 |
CA2282789A1 (en) | 1998-09-03 |
CN1248976A (en) | 2000-03-29 |
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