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WO1997048675A1 - 2-disubstituted cyclohexenyl and cyclohexyl antimicrobial agents - Google Patents

2-disubstituted cyclohexenyl and cyclohexyl antimicrobial agents Download PDF

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WO1997048675A1
WO1997048675A1 PCT/US1996/010357 US9610357W WO9748675A1 WO 1997048675 A1 WO1997048675 A1 WO 1997048675A1 US 9610357 W US9610357 W US 9610357W WO 9748675 A1 WO9748675 A1 WO 9748675A1
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alkyl
compound
formula
moiety
amino
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PCT/US1996/010357
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Robert H. Chen
Maud Urbanski
Min Xiang
John F. Barrett
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Ortho Pharmaceutical Corporation
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Priority to AU62801/96A priority Critical patent/AU6280196A/en
Priority to PCT/US1996/010357 priority patent/WO1997048675A1/en
Publication of WO1997048675A1 publication Critical patent/WO1997048675A1/en

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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D231/00Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings
    • C07D231/02Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings
    • C07D231/10Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
    • C07D231/12Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C211/00Compounds containing amino groups bound to a carbon skeleton
    • C07C211/43Compounds containing amino groups bound to a carbon skeleton having amino groups bound to carbon atoms of six-membered aromatic rings of the carbon skeleton
    • C07C211/44Compounds containing amino groups bound to a carbon skeleton having amino groups bound to carbon atoms of six-membered aromatic rings of the carbon skeleton having amino groups bound to only one six-membered aromatic ring
    • C07C211/49Compounds containing amino groups bound to a carbon skeleton having amino groups bound to carbon atoms of six-membered aromatic rings of the carbon skeleton having amino groups bound to only one six-membered aromatic ring having at least two amino groups bound to the carbon skeleton
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    • C07C211/00Compounds containing amino groups bound to a carbon skeleton
    • C07C211/43Compounds containing amino groups bound to a carbon skeleton having amino groups bound to carbon atoms of six-membered aromatic rings of the carbon skeleton
    • C07C211/44Compounds containing amino groups bound to a carbon skeleton having amino groups bound to carbon atoms of six-membered aromatic rings of the carbon skeleton having amino groups bound to only one six-membered aromatic ring
    • C07C211/52Compounds containing amino groups bound to a carbon skeleton having amino groups bound to carbon atoms of six-membered aromatic rings of the carbon skeleton having amino groups bound to only one six-membered aromatic ring the carbon skeleton being further substituted by halogen atoms or by nitro or nitroso groups
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C217/00Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton
    • C07C217/54Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton having etherified hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton
    • C07C217/56Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton having etherified hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton with amino groups linked to the six-membered aromatic ring, or to the condensed ring system containing that ring, by carbon chains not further substituted by singly-bound oxygen atoms
    • C07C217/60Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton having etherified hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton with amino groups linked to the six-membered aromatic ring, or to the condensed ring system containing that ring, by carbon chains not further substituted by singly-bound oxygen atoms linked by carbon chains having two carbon atoms between the amino groups and the six-membered aromatic ring or the condensed ring system containing that ring
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    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C217/00Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton
    • C07C217/54Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton having etherified hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton
    • C07C217/56Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton having etherified hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton with amino groups linked to the six-membered aromatic ring, or to the condensed ring system containing that ring, by carbon chains not further substituted by singly-bound oxygen atoms
    • C07C217/62Compounds containing amino and etherified hydroxy groups bound to the same carbon skeleton having etherified hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton with amino groups linked to the six-membered aromatic ring, or to the condensed ring system containing that ring, by carbon chains not further substituted by singly-bound oxygen atoms linked by carbon chains having at least three carbon atoms between the amino groups and the six-membered aromatic ring or the condensed ring system containing that ring
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C235/00Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms
    • C07C235/42Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton
    • C07C235/44Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton with carbon atoms of carboxamide groups and singly-bound oxygen atoms bound to carbon atoms of the same non-condensed six-membered aromatic ring
    • C07C235/46Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton with carbon atoms of carboxamide groups and singly-bound oxygen atoms bound to carbon atoms of the same non-condensed six-membered aromatic ring having the nitrogen atoms of the carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C279/00Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups
    • C07C279/04Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups having nitrogen atoms of guanidine groups bound to acyclic carbon atoms of a carbon skeleton
    • C07C279/08Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups having nitrogen atoms of guanidine groups bound to acyclic carbon atoms of a carbon skeleton being further substituted by singly-bound oxygen atoms
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    • C07D239/00Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
    • C07D239/02Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings
    • C07D239/24Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members
    • C07D239/28Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
    • C07D239/32One oxygen, sulfur or nitrogen atom
    • C07D239/38One sulfur atom
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D239/00Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
    • C07D239/02Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings
    • C07D239/24Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members
    • C07D239/28Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
    • C07D239/32One oxygen, sulfur or nitrogen atom
    • C07D239/42One nitrogen atom
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D295/00Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms
    • C07D295/04Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms
    • C07D295/12Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by singly or doubly bound nitrogen atoms
    • C07D295/125Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by singly or doubly bound nitrogen atoms with the ring nitrogen atoms and the substituent nitrogen atoms attached to the same carbon chain, which is not interrupted by carbocyclic rings
    • C07D295/13Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by singly or doubly bound nitrogen atoms with the ring nitrogen atoms and the substituent nitrogen atoms attached to the same carbon chain, which is not interrupted by carbocyclic rings to an acyclic saturated chain
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    • C07C2601/00Systems containing only non-condensed rings
    • C07C2601/12Systems containing only non-condensed rings with a six-membered ring
    • C07C2601/14The ring being saturated
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    • C07C2601/16Systems containing only non-condensed rings with a six-membered ring the ring being unsaturated

Definitions

  • This invention relates to certain new cyclohexenyl and cyclohexyl compounds, to processes for their production, and to their use as antimicrobial agents.
  • Virulence, chemotaxis, toxin production, sporulation, and reproduction are examples of the bacterial processes that are under regulatory control, and which could be inhibited by such compounds.
  • the inhibition of one or more of these processs is expected to lead to reduced virulence, a slowing or halting of bacterial growth and reproduction, and even to bacterial cell death if vital functions are interrupted.
  • All bacteria have two-component regulatory systems that have essentially the same type of "switch” composed of a sensor protein (a histidine protein kinase), paired with a regulatory protein (an aspartate-rich carboxylate pocket). These switches have the net effect of transmitting information from the environment to the cell nucleus, where the information is responded to by the switching on or off of transcription of relevant genes.
  • the first step of this phosphorelay scheme relies on numerous histidine protein kinase (HPK) enzymes. Each of these HPK enzymes is a sens ⁇ or molecule, and responds to stimulation by a specific environmental signal by transferring phosphate from ATP to a histidine residue of the HPK protein.
  • HPK histidine protein kinase
  • This auto-phosphorylation is followed by transfer of the phosphate to an aspartyl residue of one or more acceptor proteins (the second components of the two-component switch), which are either regulators of gene expression (by binding to control regions on DNA, or to the RNA polymerase complex) or are themselves kinases for other acceptor molecules.
  • acceptor proteins the second components of the two-component switch
  • These secondary acceptors may again be regulatory proteins, or kinases toward yet another protein.
  • This cascade of phosphate from protein to protein eventually results in the phosphorylation of one or more regulatory proteins, which then control gene expression.
  • these proteins have been shown to control most adaptive responses of bacteria in response to stress, and are directly responsible for the ability of the bacteria to survive in the human host by expressing virulence factors encoded downstream from these regulatory "switches” (and therefore under the control of the "switches”). Inhibition of these regulatory "switches” would prevent the bacteria from growing or surviving in the host.
  • the compounds of the present invention are active in inhibiting histidine protein kinase, one of the components of this regulatory "switch", and are thus effective in inhibiting bacterial growth.
  • the invention relates to compounds of the formula I:
  • Ri is independently selected from branched or unbranched (Ci - C6)alkyl, (Ci -C ⁇ ) hydroxyalkyi, and a moiety of the formula:
  • R ⁇ wherein: p is an integer from 0-6; and R3 , R4 and R5 are independently selected from hydrogen, halo, (C-
  • n is an integer from 1-6;
  • q is an integer from 0-2;
  • X is selected from NH, 0 and S;
  • R2 is selected from phenyl and a heterocyclic moiety wherein the heterocyclic moiety is a monocyclic heterocyclic group having 5 or 6 ring atoms and 1-4 nitrogen, oxygen, or sulfur atoms and is saturated or unsaturated, and wherein the phenyl or heterocyclic moiety is substituted with amino, moieties of the formula: carboxy, carboxy(C ⁇ -C6)alkyl, alkyl(C ⁇ -C6)carboxy, or a moiety of the formula:
  • RQ is selected from hydrogen and (C-
  • Ry is selected from hydrogen, (C1 -C6 ) alkyl, (C3-C6) cycloalkyl, (C1 -C6) hydroxyalkyi, (C ⁇ -C6)acyl, a moiety of the formula:
  • m is an integer from 1-4; and Re is selected from amino, amino(C ⁇ -C6)alkyl, amino((C ⁇ -C6)alkyl)2, an aryl group and a heterocyclic group wherein the aryl group is a monocyclic or bicyclic aromatic hydrocarbon group having from 6 to 10 carbon atoms and the heterocyclic group is a monocyclic or bicyclic group of 4-10 ring atoms wherein the heteroatom or heteratoms are selected from 1-4 oxygen, nitrogen or sulfur atoms and each ring of the heterocycle is composed of 4-6 atoms and is saturated or unsaturated; and the pharmaceutically acceptable salts thereof.
  • Ri is selected from branched or unbranched (Ci - Ce) alkyl, (Ci C ⁇ ) hydroxyalkyi, and a moiety of the formula:
  • p is an integer from 0-6;
  • R3, R4 and R5 are independently selected from hydrogen, halo, (Ci - C4) alkyl, and (Ci - C4) alkoxy;
  • n is an integer from 1-3;
  • X is NH, O or S:
  • R2 is selected from phenyl, pyrimidine, and pyrazole and R2 is substituted with amino, moieties of the formula:
  • substituents selected from oxo, halo, trifluoromethyl, hydroxy, -(Ci -C ⁇ ) alkyl and (Ci -C ⁇ ) alkoxy,
  • Re is selected from hydrogen and (C ⁇ -C6)alkyl; and Ry is selected from hydrogen, (Ci - CQ) alkyl, (C4-C6) cycloalkyl, (C1 -C6) hydroxyalkyi, a moiety of the formula :
  • n is an integer from 1-4;
  • R8 is selected from amino, amino(C-
  • R1 is benzyl optionally substituted with one to three substituents independently selected from halo, (C-
  • n is the integer 2;
  • X is O or NH2
  • R2 is phenyl substituted with amino or a moiety selected from the formula:
  • Re is selected from hydrogen and (C ⁇ -C6)alkyl and Ry is selected from hydrogen, (C ⁇ -C6)alkyl, (C4-C6)cycloalkyl, (C-J-C6) hydroxyalkyi and a moiety selected from those of the formula: wherein m is an integer from 1 -2 and Rs is selected from amino, amino(C-
  • dimers of the compounds of Formula I formed by the condensation of two molecules having an aminoalkyl substituent on the R2 moiety as illustrated by the compounds having the structure:
  • the 2-disubstituted cyclohexenyl and cyclohexyl compounds of the present invention are inhibitors of histidine protein kinase enzyme and as such have utility as antibacterial agents in treating bacterial infections in warm-blooded animals.
  • the compounds of the present invention may generally be prepared by reacting a substituted cyclohexenyl compound of formula III with a substituted hydroxy, amino or thiol containing compound of formula IV as follows:
  • W represents an appropriate reactive leaving group such as, for example, halo; such as chloro, bromo or iodo or a sulfonyloxy group, such as methanesulfonyloxy, trifluoromethanesulfonyloxy, benzenesulfonyloxy, 4-methylbenzenesulfonyloxy and the like leaving groups.
  • X' is hydroxy, a primary or secondary amine. or a thiol group, depending on the nature of the moiety X in the final compound.
  • R2' may be any of the moieties of R2 or, as shown in the following Scheme 2, particularly in the case where R2 is a substituted phenyl or substituted heterocyclic moiety, R2 may be an intermediate such as a (hydroxyalkyi) phenyl moiety. 9 ⁇ which may be further reacted with, for example, a secondary amine, to yield the final compounds having further substituents, like an (alkylamino) compound H, on the phenyl or heterocyclic moiety of R2.
  • the reaction can be conveniently carried out by mixing the reactants in an inert solvent such as hexane, diethyl ether, toluene, tetrahydrofuran and the like under appropriate temperatures from room temperature or below up to the boiling point of the solvent used.
  • an inert solvent such as hexane, diethyl ether, toluene, tetrahydrofuran and the like under appropriate temperatures from room temperature or below up to the boiling point of the solvent used.
  • the products are isolated by filtration or by evaporation of the solvent and they may be purified by recrystallization, absorption chromatography or distillation under reduced pressure.
  • the substituted cyclohexenyl starting material of Formula II may be prepared in accordance with Scheme I in which the 3-ethoxy-2- cyclohexanone compound of formula 1 is reacted with the Grignard reagent or an alkyllithium compound derived from the alkyl, protected hydroxyalkyi or phenyl moiety Ri , to yield the substituted 2-cyclohexanone compound 2.
  • the reaction may conveniently be conducted in an appopriate solvent , such as, for example ether or tetrahydrofuran. Elevated temperatures may be appropriate to enhance the reaction rate.
  • This compound is then reduced with a reducing agent such as a sodium borohydride, lithium aluminum hydride or the like in suitable solvents such as alcohols , THF or ether to yield the hydroxy cyclohexenyl compound 2-
  • a reducing agent such as sodium borohydride, lithium aluminum hydride or the like in suitable solvents such as alcohols , THF or ether
  • suitable solvents such as alcohols , THF or ether
  • the hydroxy cyclohexenyl intermediate 2 is then converted to the alkylhydroxy cyclohexenyl compound fi by reacting 3. with either (a) sodium hydride/ phenylvinylsulfoxide or (b) triethyl orthoester followed by reduction of the resulting intermediate 2a with a reducing agent such as sodium borohydride or lithium aluminum hydride or the like, to yield the hydroxyalkylcyclohexenyl intermediate £.
  • the ether linked compounds where X is oxygen are conveniently prepared by reacting the substituted hydroxyalkyi cyclohexenyl intermediate fi with a reagent capable of converting the alcohol function into a reactive leaving group W, for example halo or methanesulfonyl chloride and the like.
  • a reagent capable of converting the alcohol function into a reactive leaving group W for example halo or methanesulfonyl chloride and the like.
  • the resulting compound Z is then reacted with the appropriate phenol 8_; such as 4-hydroxy phenethyl alcohol to yield the cyclohexenyloxy compound 9_.
  • the reaction is generally carried out in the presence of a base, such as, potassium carbonate, potassium hydroxide, sodium hydroxide, and the like at temperatures of room temperature to reflux.
  • the methanesulfonyl compound Z may be reacted with the (hydroxyalkyi) phenol compound SL to yield the cyclohexenyl phenoxy compound 21.
  • This compound may be further reacted with methanesulfonyl chloride in the presence of triethylamine to form the methanesulfonat ⁇ intermediate 1Q, which can be reacted with ammonia or a primary or secondary amine to obtain the amino compound H.
  • the amino compound H can be obtained directly by reacting the cyclohexenyl methanesulfonyl intermediate Z with an alkylaminophenol compound 14 or l ⁇ under basic conditions, such as in the presence of potassium carbonate, potassium hydroxide or sodium hydroxide.
  • the guanidino compound 12 may be prepared by reacting the amino derivative 12 with 3,5-dimethylpyrazole-1 -carboxamidine nitrate in N.N-dimethyl formamide at room temperature to 100°C.
  • the intermediate j_9_ is converted to the methanesulfonyl compound 20. by hydrolysis with an aqueous base such as sodium hydroxide at temperatures of room temperature to 80°C followed by decarboxylation at about 180°C.
  • the mono acid is reduced with lithium aluminum hydride or the like and then reacted with methanesulfonyl chloride in triethyl amine.
  • JJ3. or 2Q are converted to the final compounds by the procedures of Scheme 2.
  • Those compounds wherein X is sulfur can be prepared in accordance with Scheme 4 by reacting the cyclohexenyl methanesulfonyl intermediate Z with the appropriate thiol reagent. So, for example, the thiol compound 2Z can be prepared from reaction of the thiol derivative 20. with the cyclohexenyl intermediate 1_. Scheme 4
  • the saturated cyclohexyl compounds of Formula I may be prepared in accordance with Scheme 5 by hydrogenation of the cyclohexenyl compound using conventional catalytic hydrogenation techniques, such as, for example, with hydrogen under pressure using 10% palladium on carbon in a suitable solvent such as triflouroacetic acid.
  • the compounds of the invention may have one or more asymmetrical carbon atoms in their structure. It is intended that the present invention include within its scope the stereochemically isomeric forms of the compounds as well as their racemates. Pure sterochemically isomeric forms may be obtained by the application of art known principles. Diastereoisomers may be separated by physical separation methods such as fractional crystallization and chromatographic techniques and enantiomers may be separated from each other by the selective crystallization of the diasteromeric salts with optically active acids. Pure stereoisomers may also be prepared synthetically from the corresponding pure isomers by using stereospecific reactions.
  • Suitable pharmaceutical salts are those of inorganic or organic acids, such as, hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid, nitric acid, phosphoric acid, acetic acid, succinic acid, oxalic acid, malic acid and the like.
  • Suitable salts are furthermore those of inorganic or organic bases, such as KOH, NaOH, Ca(OH)2, AI(OH)3, piperidine, morpholine, ethylamine, triethylamine and the like.
  • the hydrated forms of the compounds which contain various amounts of water, for instance, the hydrate, hemihydrate and sesquihydrate forms.
  • the compounds of the present invention have antibacterial activity as determined by the following tests. First, the compounds are tested for their activity in inhibiting the autophosphorylation of Kinase A and the transphosphorylation of SPoOF, two proteins involved in the signal transduction system controlling regulatory gene expression in bacteria. Representative compounds are then tested for antibacterial activity against selected pathogenic organisms by the MIC method. The results are set forth below.
  • the SpoOF response regulator is the primary substrate for phosporylation by the protein kinase, Kin A, involved in the sporulation process in bacteria. See D. Burbulys, K.A. Trach, J.A. Hoch, Cell, 64, 545-552 (1991 ).
  • 5X Loading Dye 0.5M TRIS-HCl-pH 6.8 (7.5 mL), 10% SDS (2 mL) 0.1% bromophenol blue (0.5 mL), 100% glycerol (3 mL) and 12.5 M b- mercaptoethanol (0.3 mL) 1 -1.3 mg/mL KinA:15 mM TRIS-HCI, pH 8.0, 6 mM KCI; 4 mM b- mercaptoethanol; 40% glycerol (-20 °C)
  • the reaction mixture was prepared from 8X Salts (87 mL), 1 M TRIS, pH 8 (87 mL), 50% glycerot (63 mL), 2% gelatin (31 mL), SPoOF (14.1 mL) and KinA (7.0 mL).
  • Microcentrifuge tubes were filled with the reaction mixture (18.5 mL) as well as 1mM solution of the test compound in DMSO (18.5 mL) and incubated for 15 min on ice. Add 100 mM [32p]ATP/ATP solution (625 mCi, 3.0 mL) and leave for 10 minutes at room temperature.
  • an IC 50 is calculated by running predetermined inhibitor concentrations (500, 250, 125, 62.5, 31.3, 15.7 and 7.9 mM). The % inhibition is determined by measuring the concentration of radioactive phosphorus with a phosphoimager and calculating the values using a software program (Biorad Molecular Analyst). Results
  • the in vitro antimicrobial spectrum of the compounds of the present invention were determined by the microdilution broth method following the test method from the National Committee for Laboratory Standards (NCCLS). The method is described in the NCCLS Document M7-A2, Vol. 10, No.8 "Methods for Dilution Antimicrobial Susceptibility Test for Bacteria that Grow Aerobically - Second Edition".
  • test organisms are prepared by adjusting the turbidity of actively growing broth cultures so that the final concentration of test organism after it is added to the wells is approximately 5 x 10 4 colony forming units per well delivered by the Steers replicating device.
  • the trays are incubated at 35°C for 16-20 hours and then read.
  • the minimal inhibitory concentration (MIC) is the lowest concentration of antimicrobial that completely inhibits growth of the test organism.
  • the amount of growth in the wells containing the test compound is compared with the amount of growth in the growth- control wells used in each tray.
  • the compounds When the compounds are employed for the above utility, they may be combined with one or more pharmaceutically acceptable carriers, e.g., solvents, diluents, and the like, and may be administered orally in such forms as tablets, capsules, dispersible powders, granules, or suspensions containing for example, from about 0.5% to 5% of suspending agent, syrups containing, for example, from about 10% to 50% of sugar, and elixirs containing, for example, from about 20% to 50% ethanol, and the like, or parenterally in the form of sterile injectable solutions or suspensions containing from about 0.5% to 5% suspending agent in an isotonic medium.
  • These pharmaceutical preparations may contain, for example, from about 0.5% up to about 90% of the active ingredient in combination with the carrier, more usually between 5% and 60% by weight.
  • any of the usual pharmaceutical media may be employed.
  • Solid carriers include starch, lactose, dicalcium phosphate, microcrystalline cellulose, sucrose and kaolin, while liquid carriers include sterile water, polyethylene glycols, non-ionic surfactants and edible oils such as corn, peanut and sesame oils, as are appropriate to the nature of the active ingredient and the particular form of administration desired.
  • Adjuvants customarily employed in the preparation of pharmaceutical compositions may be advantageously included, such as flavoring agents, coloring agents, preserving agents, and antioxidants, for example, vitamin E, ascorbic acid, BHT and BHA.
  • compositions from the standpoint of ease of preparation and administration are solid compositions, particularly tablets and hard-filled or liquid-filled capsules. Oral administration of the compounds is preferred.
  • active compounds may also be administered parenterally or intraperitoneally.
  • Solutions or suspensions of these active compounds as a free base or pharmacological acceptable salt can be prepared in water suitably mixed with a surfactant such as hydroxypropyl-cellulose.
  • Dispersions can also be prepared in glycerol, liquid polyethylene glycols and mixtures thereof in oils. Under ordinary conditions of storage and use, these preparations contain a preservative to prevent the growth of microorganisms.
  • the pharmaceutical forms suitable for injectable use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions.
  • the form must be sterile and must be fluid to the extent that easy syringability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi.
  • the carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g., glycerol, propylene glycol and liquid polyethylene glycol), suitable mixtures thereof, and vegetable oils.
  • the effective dosage of active ingredient employed may vary depending on the particular compound employed, the mode of administration and the severity of the condition being treated. However, in general, satisfactory results are obtained when the compounds of the invention are administered at a daily dosage of from about 0.1 mg/kg to about 400mg/kg of animal body weight, preferably given in divided doses two to four times a day, or in sustained release form. For most large mammals the total daily dosage is from about 0.07g to 7.0g, preferably from about 100mg to 1000mg Dosage forms suitable for internal use comprise from about 100mg to 500mg of the active compound in intimate admixture with a solid or liquid pharmaceutically acceptable carrier. This dosage regimen may be adjusted to provide the optimal therapeutic response. For example, several divided doses may be administered daily or the dose may be proportionally reduced as indicated by the exigencies of the therapeutic situation.
  • compositions and medicaments are carried out by any method known in the art, for example, by mixing the active ingredients(s) with the diluent(s) to form a pharmaceutical composition (e.g. a granulate) and then forming the composition into the medicament (e.g. tablets).
  • a pharmaceutical composition e.g. a granulate
  • This invention further provides a method of treating bacterial infections in warm-blooded animals, which comprises administering to the animals a compound of the invention alone or in admixture with a diluent or in the form of a medicament according to the invention.
  • Methanesulfonyl chloride (2.3 mL, 0.029 mol) was added to a solution of alcohol 1 E (6.3 g, 0.029 mol) and triethylamine (8.7 mL, 0.062 mol) in
  • Methanesulfonyl chloride (1.1 mL, 0.014 mol) was added dropwise to a solution of 1G (4.0 g, 0.012 mol). Et3N in CH2CI2 (100 mL) at 0 °C under N 2 . The reaction mixture was stirred for 30 min, an additional portion of methanesulfonyl chloride (0.5 mL, 0.007 mol) was added and the resulting mixture was stirred for another 2 h. Water was added and the resulting mixture was extracted with several portions of CH2CI2. The combined organic extracts were dried (Na2SO4) and concentrated in vacuo to give the mesylate derivative 1 H, as an oil (5.68 g).
  • Methanesulfonyl chloride (7 mL, 9.2 mmol) was added dropwise to a stirred solution of alcohol 4D (2.12 g, 9.2 mmol), triethylamine (3 mL) and CH2CI2 (200 mL) at 0 °C under N2. The reaction mixture was stirred for 2 h and partitioned between H2O and CH2CI2. The resulting organic layer was dried (MgSO4) and concentrated in vacuo to give the mesylate 4D as an oil (4.39
  • Methanesulfonyl chloride (0.5 g, 3.78 mmol) was added dropwise to a solution of 4E (1.2 g, 3.43 mmol) in CH2CI2 (50 mL) at 0 °C under N 2 . The reaction mixture was stirred for 2h. Water was added and the resulting mixture was extracted with several portions of CH2CI2- The combined organic extracts were dried (Na2SU4) and concentrated in vacuo to give the mesylate derivative 4F, as an oil (1.28 g).
  • Derivative 6A (200.5 mg, ??), compound 5, and triethylamine (1 mL) in DMF (15 mL) was heated at 60 °C for 16 h and concentrated in vacuo. The residue was washed with several portions of ether and stirred in H2O for 8 h. The resulting solid was isolated and dried in vacuo to give the title compound as a solid: mp 128-130 °C; IR (KBr, cm-1): 3380, 3190, 2938, 1669, 1626; Anal. Calc'd for C23H28CIN3O ⁇ NO3
  • Methanesulfonyl chloride (0.15 mL, 1.94 mmol) was added to a stirred solution of triethylamine (0.5mL, 3.6 mmol), 11 B (0.7 g, 1.97 mmol) in CH2CI2 (30 mL) at 0 °C. After 15 min the reaction mixture was poured into H2O and extracted with several portions of CH2CI2. The combined extracts were dried (MgS04), concentrated in vacuo and purified by column chromatography using ether.hexanes (30:70) as an eluent to give the mesylate 11C.
  • 15B Sodium hydride (270 mg, 11.25 mmol) was added in portions to a stirred solution of 15A (1.0 g, 7.04 mmol) in THF (150 mL) at room temperature under N2. After 30 min of stirring, phenyl vinyl sulfoxide (2.64 g, 17.6 mmol) was added and the resulting mixture was stirred for 16 h. The reaction was quenched with H2O, extracted with successive portions of ether as well as ethyl acetate and the combined organic extracts were concentrated in vacuo to give 15B as an oil (5.6 g).
  • Methanesulfonyl chloride 70 mg, 0.56 mmol was added dropwise to a stirred solution of 15F (183 mg, 0.55 mmol) and triethylamine (2 mL) in CH2CI2 (100 mL) at 0 °C under N2. This mixture was stirred for 15 h and partitioned between H2O and CH2CI2. The resulting organic layer was separated, dried (Na2S04) and concentrated in vacuo to give the mesylate 15 G as an oil (180 mg).
  • 16B A mixture of 16B (800 mg, 3.10 mmol) acetic acid (2 mL) and RO2 (20 mg) in EtOH (25 mL) was placed on a hydrogenation apparatus and treated with H 2 at 55 psi for 6 h. The resulting mixture was filtered through celite and the filter cake was washed with CH 2 CI2. The combined organic extracts were concentrated in vacuo to give the saturated derivative 16B as an oil (510 mg).
  • Compound 16 Alcohol 16D was treated in the same manner, following the same reaction sequence as intermediate 1 E of Example 1 to give Compound 16 as a solid:mp 120-123 °C; IR (KBr, cm-1): 2939, 1298, 1238; Anal. Calc'd for C23H 3 oN 2 ⁇ 3'C2H2 ⁇ 4O.5H2 ⁇ ; Calculated: C, 62.36; H, 6.91 ; N, 5.82 Found: C, 62.12; H, 6.95; N, 6.21

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Abstract

The invention relates to cyclohexenyl antibacterial compounds of formula (I) wherein: R1 is selected from a branched or unbranched (C1-C6)alkyl, (C1-C6)hydroxyalkyl, and a moiety of formula (a) wherein: p is an integer from 0-6; and R3, R4 and R5 are independently selected from hydrogen, halo, (C1-C4)alkyl, (C1-C4)alkoxy, hydroxy, hydroxyalkyl, amino, (C1-C4)alkylamino, and nitro; n is an integer from 1-6; q is an integer from 0-2; X is selected from NH, O and S; R2 is selected from phenyl and a heterocyclic moiety wherein the heterocyclic moiety is a monocyclic heterocyclic group having 5 or 6 ring atoms and 1-4 nitrogen, oxygen, or sulfur atoms and is saturated or unsaturated, and wherein the phenyl or heterocyclic moiety is substituted with amino, moieties of formula (b), carboxy, carboxy(C1-C6)alkyl, (C1-C6)alkylcarboxy, or a moiety of formula (c) and, optionally, 1-3 substituents selected from oxo, halo, trifluoromethyl, hydroxy, -(C1-C6)alkyl and (C1-C6)alkoxy; and pharmaceutical compositions containing the compounds, methods for their production and use.

Description

2-DISUBSTITUTED CYCLOHEXENYL AND CYCLOHEXYL ANTIMICROBIAL AGENTS
BACKGROUND OF THE INVENTION
This invention relates to certain new cyclohexenyl and cyclohexyl compounds, to processes for their production, and to their use as antimicrobial agents.
It is well established that prokaryotes regulate the transcription of many of their genes in response to changes in the organisms' environment (J. B. Stock, A. M. Stock, and J. M. Mottonen, Nature, 344, 395-400 (1990)). Such regulation is essential if the organism is to adapt itself to survival in a changing environment, and pathogenic bacteria rely on such regulatory systems to enable them to survive within their host's body (J. F. Miller, J. J. Mekalanos, S. Falkow, Science, 243, 1059 (1989). Chemical compounds that interfere with the regulatory mechanisms would be expected to be useful anti-infective drugs, as they would prevent bacteria from making necessary adaptive changes in their patterns of gene expression.
Virulence, chemotaxis, toxin production, sporulation, and reproduction are examples of the bacterial processes that are under regulatory control, and which could be inhibited by such compounds. The inhibition of one or more of these processs is expected to lead to reduced virulence, a slowing or halting of bacterial growth and reproduction, and even to bacterial cell death if vital functions are interrupted.
All bacteria have two-component regulatory systems that have essentially the same type of "switch" composed of a sensor protein (a histidine protein kinase), paired with a regulatory protein (an aspartate-rich carboxylate pocket). These switches have the net effect of transmitting information from the environment to the cell nucleus, where the information is responded to by the switching on or off of transcription of relevant genes. The first step of this phosphorelay scheme relies on numerous histidine protein kinase (HPK) enzymes. Each of these HPK enzymes is a sens~or molecule, and responds to stimulation by a specific environmental signal by transferring phosphate from ATP to a histidine residue of the HPK protein. This auto-phosphorylation is followed by transfer of the phosphate to an aspartyl residue of one or more acceptor proteins (the second components of the two-component switch), which are either regulators of gene expression (by binding to control regions on DNA, or to the RNA polymerase complex) or are themselves kinases for other acceptor molecules. These secondary acceptors may again be regulatory proteins, or kinases toward yet another protein. This cascade of phosphate from protein to protein eventually results in the phosphorylation of one or more regulatory proteins, which then control gene expression.
Thus, these proteins have been shown to control most adaptive responses of bacteria in response to stress, and are directly responsible for the ability of the bacteria to survive in the human host by expressing virulence factors encoded downstream from these regulatory "switches" (and therefore under the control of the "switches"). Inhibition of these regulatory "switches" would prevent the bacteria from growing or surviving in the host.
Recently, workers in this field reported a method for detecting bacterial "virulence" genes that are selectively expressed when bacteria infect a host (Mahan, M. J., J. M. Slauch, and J. J. Mekalanos, Science, 259, 686-688 (1993)). The potential use of this information in the design of new antibiotics was mentioned, but actual methods of reducing expression of these genes were not described. A preliminary report from another group of workers disclosed inhibitors of the two-component switch controlling alginate gene activation in Pseudomonas aerυginosa in an in vitro system (S.
Roychoudhury et al., Proc. Nat. Acad. Sci., 90, 965-969 (1993)), but no anti¬ bacterial activity of the compounds was reported.
The compounds of the present invention are active in inhibiting histidine protein kinase, one of the components of this regulatory "switch", and are thus effective in inhibiting bacterial growth. SUMMARY OF THE INVENTION
The invention relates to compounds of the formula I:
Figure imgf000005_0001
I wherein:
Ri is independently selected from branched or unbranched (Ci - C6)alkyl, (Ci -Cβ) hydroxyalkyi, and a moiety of the formula:
Figure imgf000005_0002
Rς wherein: p is an integer from 0-6; and R3 , R4 and R5 are independently selected from hydrogen, halo, (C-|- C4) alkyl, (C1 -C4) alkoxy, hydroxy, hydroxyalkyi, amino, (C1 -C4) alkylamino, and nitro;
n is an integer from 1-6;
q is an integer from 0-2;
X is selected from NH, 0 and S;
R2 is selected from phenyl and a heterocyclic moiety wherein the heterocyclic moiety is a monocyclic heterocyclic group having 5 or 6 ring atoms and 1-4 nitrogen, oxygen, or sulfur atoms and is saturated or unsaturated, and wherein the phenyl or heterocyclic moiety is substituted with amino, moieties of the formula:
Figure imgf000006_0002
carboxy, carboxy(Cι -C6)alkyl, alkyl(Cι -C6)carboxy, or a moiety of the formula:
Figure imgf000006_0003
and, optionally, 1 -3 substituents selected from oxo, halo, trifluoromethyl, hydroxy, -(Ci -Cδ) alkyl and (C-| -C6) alkoxy; wherein RQ is selected from hydrogen and (C-| -C6)alkyl; Ry is selected from hydrogen, (C1 -C6 ) alkyl, (C3-C6) cycloalkyl, (C1 -C6) hydroxyalkyi, (Cι -C6)acyl, a moiety of the formula:
Figure imgf000006_0004
and a moiety of the formula
(CH2)rn -Re
wherein m is an integer from 1-4; and Re is selected from amino, amino(Cι -C6)alkyl, amino((Cι -C6)alkyl)2, an aryl group and a heterocyclic group wherein the aryl group is a monocyclic or bicyclic aromatic hydrocarbon group having from 6 to 10 carbon atoms and the heterocyclic group is a monocyclic or bicyclic group of 4-10 ring atoms wherein the heteroatom or heteratoms are selected from 1-4 oxygen, nitrogen or sulfur atoms and each ring of the heterocycle is composed of 4-6 atoms and is saturated or unsaturated; and the pharmaceutically acceptable salts thereof.
Preferred are compounds of the formula II:
Figure imgf000006_0001
wherein Ri is selected from branched or unbranched (Ci - Ce) alkyl, (Ci Cβ) hydroxyalkyi, and a moiety of the formula:
Figure imgf000007_0001
wherein :
p is an integer from 0-6;
and R3, R4 and R5 are independently selected from hydrogen, halo, (Ci - C4) alkyl, and (Ci - C4) alkoxy;
n is an integer from 1-3;
X is NH, O or S:
R2 is selected from phenyl, pyrimidine, and pyrazole and R2 is substituted with amino, moieties of the formula:
Figure imgf000007_0002
carboxy, (C-|-C6)alkylcarboxy, carboxy(d -C6)alkyl or a moiety of the formula:
Figure imgf000007_0003
and, optionally, 1 -3 substituents selected from oxo, halo, trifluoromethyl, hydroxy, -(Ci -Cβ) alkyl and (Ci -Cβ) alkoxy,
wherein Re is selected from hydrogen and (Cι -C6)alkyl; and Ry is selected from hydrogen, (Ci - CQ) alkyl, (C4-C6) cycloalkyl, (C1 -C6) hydroxyalkyi, a moiety of the formula :
Figure imgf000008_0001
and a moiety of the formula: - (CH2)m -R8
wherein m is an integer from 1-4; and
R8 is selected from amino, amino(C-| -C6)alkyl, phenyl, benzyl, pyrrolidine, morpholine, and indole; and the pharmaceutically acceptable salts thereof.
Most preferred are compounds of the Formula II wherein:
R1 is benzyl optionally substituted with one to three substituents independently selected from halo, (C-| -C4)alkyl, and (C-|-C-4)alkoxy;
n is the integer 2;
X is O or NH2;
R2 is phenyl substituted with amino or a moiety selected from the formula:
Figure imgf000008_0002
and optionally substituted with 1 -2 substituents selected from halo, trifluoromethyl and hydroxy;
wherein Re is selected from hydrogen and (Cι -C6)alkyl and Ry is selected from hydrogen, (Cι -C6)alkyl, (C4-C6)cycloalkyl, (C-J-C6) hydroxyalkyi and a moiety selected from those of the formula:
Figure imgf000009_0003
wherein m is an integer from 1 -2 and Rs is selected from amino, amino(C-| C6)alkyl, phenyl, benzyl, pyrrolidine, morpholine and indole,
and the pharmaceutically acceptable salts thereof.
Also included in the present invention are the dimers of the compounds of Formula I formed by the condensation of two molecules having an aminoalkyl substituent on the R2 moiety as illustrated by the compounds having the structure:
Figure imgf000009_0001
for example, 3-{Bis o{4-{2-{1 -(3-phenylpropy Όl)cyclohexen-2-yl}ethoxy)phenyl}}- 1 -dipropylamine.
The 2-disubstituted cyclohexenyl and cyclohexyl compounds of the present invention are inhibitors of histidine protein kinase enzyme and as such have utility as antibacterial agents in treating bacterial infections in warm-blooded animals.
DETAILED DESCRIPTION
The compounds of the present invention may generally be prepared by reacting a substituted cyclohexenyl compound of formula III with a substituted hydroxy, amino or thiol containing compound of formula IV as follows:
Figure imgf000009_0002
m In formula III, W represents an appropriate reactive leaving group such as, for example, halo; such as chloro, bromo or iodo or a sulfonyloxy group, such as methanesulfonyloxy, trifluoromethanesulfonyloxy, benzenesulfonyloxy, 4-methylbenzenesulfonyloxy and the like leaving groups. In formula IV. X' is hydroxy, a primary or secondary amine. or a thiol group, depending on the nature of the moiety X in the final compound.
R2' may be any of the moieties of R2 or, as shown in the following Scheme 2, particularly in the case where R2 is a substituted phenyl or substituted heterocyclic moiety, R2 may be an intermediate such as a (hydroxyalkyi) phenyl moiety. 9Λ which may be further reacted with, for example, a secondary amine, to yield the final compounds having further substituents, like an (alkylamino) compound H, on the phenyl or heterocyclic moiety of R2.
The reaction can be conveniently carried out by mixing the reactants in an inert solvent such as hexane, diethyl ether, toluene, tetrahydrofuran and the like under appropriate temperatures from room temperature or below up to the boiling point of the solvent used. The products are isolated by filtration or by evaporation of the solvent and they may be purified by recrystallization, absorption chromatography or distillation under reduced pressure.
The substituted cyclohexenyl starting material of Formula II may be prepared in accordance with Scheme I in which the 3-ethoxy-2- cyclohexanone compound of formula 1 is reacted with the Grignard reagent or an alkyllithium compound derived from the alkyl, protected hydroxyalkyi or phenyl moiety Ri , to yield the substituted 2-cyclohexanone compound 2. The reaction may conveniently be conducted in an appopriate solvent , such as, for example ether or tetrahydrofuran. Elevated temperatures may be appropriate to enhance the reaction rate. This compound is then reduced with a reducing agent such a sodium borohydride, lithium aluminum hydride or the like in suitable solvents such as alcohols , THF or ether to yield the hydroxy cyclohexenyl compound 2- The hydroxy cyclohexenyl intermediate 2 is then converted to the alkylhydroxy cyclohexenyl compound fi by reacting 3. with either (a) sodium hydride/ phenylvinylsulfoxide or (b) triethyl orthoester followed by reduction of the resulting intermediate 2a with a reducing agent such as sodium borohydride or lithium aluminum hydride or the like, to yield the hydroxyalkylcyclohexenyl intermediate £. Scheme 1
Figure imgf000011_0001
Preparation of the compounds of the present invention is further illustrated in Schemes 2-6. As can be seen from the reaction Scheme 2, the ether linked compounds where X is oxygen are conveniently prepared by reacting the substituted hydroxyalkyi cyclohexenyl intermediate fi with a reagent capable of converting the alcohol function into a reactive leaving group W, for example halo or methanesulfonyl chloride and the like. The resulting compound Z is then reacted with the appropriate phenol 8_; such as 4-hydroxy phenethyl alcohol to yield the cyclohexenyloxy compound 9_. The reaction is generally carried out in the presence of a base, such as, potassium carbonate, potassium hydroxide, sodium hydroxide, and the like at temperatures of room temperature to reflux.
To further illustrate, the methanesulfonyl compound Z may be reacted with the (hydroxyalkyi) phenol compound SL to yield the cyclohexenyl phenoxy compound 21. This compound may be further reacted with methanesulfonyl chloride in the presence of triethylamine to form the methanesulfonatθ intermediate 1Q, which can be reacted with ammonia or a primary or secondary amine to obtain the amino compound H.
Alternatively, the amino compound H can be obtained directly by reacting the cyclohexenyl methanesulfonyl intermediate Z with an alkylaminophenol compound 14 or l≥ under basic conditions, such as in the presence of potassium carbonate, potassium hydroxide or sodium hydroxide. The guanidino compound 12 may be prepared by reacting the amino derivative 12 with 3,5-dimethylpyrazole-1 -carboxamidine nitrate in N.N-dimethyl formamide at room temperature to 100°C.
Scheme 2
Figure imgf000013_0001
O
Figure imgf000014_0001
Longer chain aliphatic compounds of formula I where n is 3 or 4 are prepared in accordance with Scheme 3 wherein the cyclohexenyl methanesulfonate intermediate Z is reacted with potassium cyanide to yield the cyano intermediate IZ- The cyano intermediate \∑ is converted to intermediate IS in three steps by hydrolysis of 17 with a base such as aqueous sodium hydroxide, aqueous potassium hydroxide, or the like,
followed by reaction with a reducing agent such lithium aluminum hydride or diborane in tetrahydrofuran and finally reacting the alcohol intermediate with methanesulfonyl chloride in triethylamine.
The compounds wherein n=4 are obtained by reacting Z with sodium hydride and diethyl malonate to yield the diester J_9_. The intermediate j_9_ is converted to the methanesulfonyl compound 20. by hydrolysis with an aqueous base such as sodium hydroxide at temperatures of room temperature to 80°C followed by decarboxylation at about 180°C. The mono acid is reduced with lithium aluminum hydride or the like and then reacted with methanesulfonyl chloride in triethyl amine. JJ3. or 2Q are converted to the final compounds by the procedures of Scheme 2.
Scheme 3
D
Figure imgf000015_0001
21 Those compounds wherein X is sulfur, can be prepared in accordance with Scheme 4 by reacting the cyclohexenyl methanesulfonyl intermediate Z with the appropriate thiol reagent. So, for example, the thiol compound 2Z can be prepared from reaction of the thiol derivative 20. with the cyclohexenyl intermediate 1_. Scheme 4
Figure imgf000016_0001
In contrast, those compounds where X is a relatively weak acidic nitrogen function such as aniline or aminopyridine may be obtained from the aldehyde 5 by the reductive amination procedure. Accordingly, as shown in Scheme 4, compound 25 may be obtained from aldehyde 5_ by reacting the aminopyridine compound 24 with 5_in the presence of sodium cyanoborohydride in methanol/acetic acid to obtain the amino derivative 25*
The saturated cyclohexyl compounds of Formula I may be prepared in accordance with Scheme 5 by hydrogenation of the cyclohexenyl compound using conventional catalytic hydrogenation techniques, such as, for example, with hydrogen under pressure using 10% palladium on carbon in a suitable solvent such as triflouroacetic acid.
Scheme 5
Figure imgf000017_0001
The reactions are performed in a solvent appropriate to the reagents and materials employed and suitable for the transformation being effected. It is understood by those skilled in the art of organic synthesis that the various functionatities present on the molecule must be consistent with the chemical transformations proposed. This will frequently necessitate judgment as to the order of synthetic steps, reactive groups, and reaction conditions. Reaction conditions compatible with the substituents employed will be apparent to one skilled in the art.
From formula (I) it is evident that some of the compounds of the invention may have one or more asymmetrical carbon atoms in their structure. It is intended that the present invention include within its scope the stereochemically isomeric forms of the compounds as well as their racemates. Pure sterochemically isomeric forms may be obtained by the application of art known principles. Diastereoisomers may be separated by physical separation methods such as fractional crystallization and chromatographic techniques and enantiomers may be separated from each other by the selective crystallization of the diasteromeric salts with optically active acids. Pure stereoisomers may also be prepared synthetically from the corresponding pure isomers by using stereospecific reactions.
Suitable pharmaceutical salts are those of inorganic or organic acids, such as, hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid, nitric acid, phosphoric acid, acetic acid, succinic acid, oxalic acid, malic acid and the like. Suitable salts are furthermore those of inorganic or organic bases, such as KOH, NaOH, Ca(OH)2, AI(OH)3, piperidine, morpholine, ethylamine, triethylamine and the like. Also included within the scope of the invention are the hydrated forms of the compounds which contain various amounts of water, for instance, the hydrate, hemihydrate and sesquihydrate forms.
The compounds of the present invention have antibacterial activity as determined by the following tests. First, the compounds are tested for their activity in inhibiting the autophosphorylation of Kinase A and the transphosphorylation of SPoOF, two proteins involved in the signal transduction system controlling regulatory gene expression in bacteria. Representative compounds are then tested for antibacterial activity against selected pathogenic organisms by the MIC method. The results are set forth below.
I. Autophosphorylation of Kinase A and Transphosphorylation of SPoOF Assay
To study the effect of the compounds of the present invention on the signal transduction process in bacteria, the inhibiting effect of the compounds on the sporulation operon proteins Kinase A and SpoOF was examined. Specifically, the inhibition of autophosporylation of Kinase A and the transphosphorylation of SpoOF was determined in the following assays. The SpoOF response regulator is the primary substrate for phosporylation by the protein kinase, Kin A, involved in the sporulation process in bacteria. See D. Burbulys, K.A. Trach, J.A. Hoch, Cell, 64, 545-552 (1991 ).
The following stock reagents were either prepared and used promptly or stored at the indicated temperature:
8 X Salts : 2 M KCI (5 mL), 1 M MgCl2 (800 mL), 1 M CaCl2 (100 mL),
10 mg/mL phenylmethylsulfonyl fluoride (200 mL), 1 M dithioreitol (50 mL), 0.25M Na2EDTA (32 mL) and H2O 3.82 mL (-20 °C)
5X Loading Dye: 0.5M TRIS-HCl-pH 6.8 (7.5 mL), 10% SDS (2 mL) 0.1% bromophenol blue (0.5 mL), 100% glycerol (3 mL) and 12.5 M b- mercaptoethanol (0.3 mL) 1 -1.3 mg/mL KinA:15 mM TRIS-HCI, pH 8.0, 6 mM KCI; 4 mM b- mercaptoethanol; 40% glycerol (-20 °C)
1 mg/mL SpoOF: 17.5 mM TRIS-HCI, pH 8.0; 0.7 mM KCI ; 0.7 mM MgCl2; 0.7 mM CaCl2; 5mM b-mercaptoethanol; 30% Glycerol (-20 °C)
5% Stacking Gel: 40% 29:1 acrylamide :bis acrylamide (1.25 mL), 0.5 M TRIS-HCI, pH 6.8 (2.5 mL), 10% SDS (0.1 mL), D-H2O (6.15 mL) 10% ammonium persulfate (100 mL) and TEMED (25 mL)
SDS Running Buffer: TRIS-BASE (3.02 g, Sigma), glycine (14.4 g,
Sigma)
SDS (1 g, SERVA), D-H2O (to 1 L)
The reaction mixture was prepared from 8X Salts (87 mL), 1 M TRIS, pH 8 (87 mL), 50% glycerot (63 mL), 2% gelatin (31 mL), SPoOF (14.1 mL) and KinA (7.0 mL). Microcentrifuge tubes were filled with the reaction mixture (18.5 mL) as well as 1mM solution of the test compound in DMSO (18.5 mL) and incubated for 15 min on ice. Add 100 mM [32p]ATP/ATP solution (625 mCi, 3.0 mL) and leave for 10 minutes at room temperature. Quench the reaction with 5X loading dye (10 mUper tube) and either load the samples on a prepared 5% Stacking Gel or store on dry ice until ready for use. Filt the prepared wells with SDS Running Buffer, load samples in the wells, add the upper buffer chamber and place in a tank filled with SDS Running Buffer. Apply 80 volts (Hoeffer Unit) until the dye front reaches the bottom of the stacking gel and then increase the voltage to 250 volts until electrophoresis is complete.
If either enzyme is inhibited (determined by their absence in the developed gel), an IC 50 is calculated by running predetermined inhibitor concentrations (500, 250, 125, 62.5, 31.3, 15.7 and 7.9 mM). The % inhibition is determined by measuring the concentration of radioactive phosphorus with a phosphoimager and calculating the values using a software program (Biorad Molecular Analyst). Results
Figure imgf000020_0001
Figure imgf000021_0001
II. MIC Antimicrobial Activity
Procedure
The in vitro antimicrobial spectrum of the compounds of the present invention were determined by the microdilution broth method following the test method from the National Committee for Laboratory Standards (NCCLS). The method is described in the NCCLS Document M7-A2, Vol. 10, No.8 "Methods for Dilution Antimicrobial Susceptibility Test for Bacteria that Grow Aerobically - Second Edition".
In this method two fold serial dilutions of drug in cation supplemented Mueller Hinton broth are added to wells in microdilution trays. The test organisms are prepared by adjusting the turbidity of actively growing broth cultures so that the final concentration of test organism after it is added to the wells is approximately 5 x 104 colony forming units per well delivered by the Steers replicating device. Following inoculation of the microdilution trays, the trays are incubated at 35°C for 16-20 hours and then read. The minimal inhibitory concentration (MIC) is the lowest concentration of antimicrobial that completely inhibits growth of the test organism. The amount of growth in the wells containing the test compound is compared with the amount of growth in the growth- control wells used in each tray.
Figure imgf000022_0001
Figure imgf000023_0001
When the compounds are employed for the above utility, they may be combined with one or more pharmaceutically acceptable carriers, e.g., solvents, diluents, and the like, and may be administered orally in such forms as tablets, capsules, dispersible powders, granules, or suspensions containing for example, from about 0.5% to 5% of suspending agent, syrups containing, for example, from about 10% to 50% of sugar, and elixirs containing, for example, from about 20% to 50% ethanol, and the like, or parenterally in the form of sterile injectable solutions or suspensions containing from about 0.5% to 5% suspending agent in an isotonic medium. These pharmaceutical preparations may contain, for example, from about 0.5% up to about 90% of the active ingredient in combination with the carrier, more usually between 5% and 60% by weight.
In preparing the compositions in oral dosage form, any of the usual pharmaceutical media may be employed. Solid carriers include starch, lactose, dicalcium phosphate, microcrystalline cellulose, sucrose and kaolin, while liquid carriers include sterile water, polyethylene glycols, non-ionic surfactants and edible oils such as corn, peanut and sesame oils, as are appropriate to the nature of the active ingredient and the particular form of administration desired. Adjuvants customarily employed in the preparation of pharmaceutical compositions may be advantageously included, such as flavoring agents, coloring agents, preserving agents, and antioxidants, for example, vitamin E, ascorbic acid, BHT and BHA.
The preferred pharmaceutical compositions from the standpoint of ease of preparation and administration are solid compositions, particularly tablets and hard-filled or liquid-filled capsules. Oral administration of the compounds is preferred.
These active compounds may also be administered parenterally or intraperitoneally. Solutions or suspensions of these active compounds as a free base or pharmacological acceptable salt can be prepared in water suitably mixed with a surfactant such as hydroxypropyl-cellulose. Dispersions can also be prepared in glycerol, liquid polyethylene glycols and mixtures thereof in oils. Under ordinary conditions of storage and use, these preparations contain a preservative to prevent the growth of microorganisms.
The pharmaceutical forms suitable for injectable use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. In all cases, the form must be sterile and must be fluid to the extent that easy syringability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g., glycerol, propylene glycol and liquid polyethylene glycol), suitable mixtures thereof, and vegetable oils.
The effective dosage of active ingredient employed may vary depending on the particular compound employed, the mode of administration and the severity of the condition being treated. However, in general, satisfactory results are obtained when the compounds of the invention are administered at a daily dosage of from about 0.1 mg/kg to about 400mg/kg of animal body weight, preferably given in divided doses two to four times a day, or in sustained release form. For most large mammals the total daily dosage is from about 0.07g to 7.0g, preferably from about 100mg to 1000mg Dosage forms suitable for internal use comprise from about 100mg to 500mg of the active compound in intimate admixture with a solid or liquid pharmaceutically acceptable carrier. This dosage regimen may be adjusted to provide the optimal therapeutic response. For example, several divided doses may be administered daily or the dose may be proportionally reduced as indicated by the exigencies of the therapeutic situation.
The production of the above-mentioned pharmaceutical compositions and medicaments is carried out by any method known in the art, for example, by mixing the active ingredients(s) with the diluent(s) to form a pharmaceutical composition (e.g. a granulate) and then forming the composition into the medicament (e.g. tablets). This invention further provides a method of treating bacterial infections in warm-blooded animals, which comprises administering to the animals a compound of the invention alone or in admixture with a diluent or in the form of a medicament according to the invention.
The following examples describe in detail the chemical synthesis of representative compounds of the present invention. The procedures are illustrations, and the invention should not be construed as being limited by chemical reactions and conditions they express. No attempt has been made to optimize the yields obtained in these reactions, and it would be obvious to one skilled in the art that variations in reaction times, temperatures, solvents, and/or reagents could increase the yields.
EXAMPLE 1
Figure imgf000025_0001
2-[3-[4-[2-[1-BENZYL(2-CYCLOHEXENYL)]]ETHOXY]PHENYL- ETHYLjAMINOETHYLPYRROLIDINE MONOOXALATE HEMIHYDRATE.
Compound 1
Figure imgf000025_0002
1 A 3-Ethoxy-2-cyclohexen-1-one (182 g, 1.3 mol) was added dropwise to a stirred solution of 2.0 M benzylmagnesium chloride (800 mL, 1.6 mol) in ether (200 mL) at 0 °C under N2. The resulting mixture was stirred for a total of 5 h at 0 °C, quenched with 30% H2SO4 aq. (350 mL) and stirred at room temperature for 16 h. The mixture was extracted with several portions of CH2CI2 and the combined organic extracts were concentrated in vacuo to give compound 1 A as an oil (130.0 g).
Figure imgf000026_0001
1 B Compound 1A (130 g, 0.7 mol) was added dropwise, via an addition funnel, to a stirred mixture of LAH (13.28 g, 0.7 mol) and ether (400 mL) under N2 at 0 °C. When addition was complete, the addition funnel was rinsed with ether (200 mL) to remove an residual reactant and the reaction was stirred for another 5 h. The reaction mixture was quenched by the addition of saturated aqueous K2CO3 and left to stir at room temperature for 16 h. The resulting mixture was filtered through celite, dried (Na2SO4) and concentrated in vacuo to give the alcohol 1 B as an oil (134.2 g, ).
Figure imgf000026_0002
1 C Sodium hydride (4.5 g, 0.19 mol) was added portionwise to a solution of alcohol 1 B (70.1 g, 0.373 mol) in THF (600 mL) at room temperature under N2. The mixture was stirred for 30 min, phenyl vinyl sulfoxide was added (62.25 g, 0.41 mol) and the resulting mixture was stirred for another 20 min. Additional portions of sodium hydride (0.5 g, 20 mmol) and phenyl vinyl sulfoxide (6.0 g, 39.4 mmol) were added and this mixture was stirred overnight. The reaction was quenched with acetic acid, extracted with water and concentrated in vacuo to give 1C which was used without further purification, i
Figure imgf000026_0003
1 D Sodium bicarbonate (78.0 g, 0.93 mol) was added to-a stirred solution of derivative 1C (77.39 g, 0.23 mol) in decalin (300 mL) under N2. The reaction mixture was heated at reflux for 4 h, filtered through celite and the resulting filter cake was washed with CH2CI2. The filtrate was concentrated in vacuo and the residue was purified by vacuum distillation to give aldehyde 1 D as an oil (63 g).
Figure imgf000027_0001
1 E A solution of aldehyde 1 D (20 g, 0093 mol) in MeOH (300 mL) was added over 1.5 h, to a slurry of NaBH4 (10.6 g, 0.28 mol) in MeOH (50 mL) at O °C . After addition, the mixture was stirred at room temperature for 3 h and poured onto H2O (250 mL). The MeOH was removed in vacuo and H2O (100 mL) was added. This mixture was extracted with ethyl acetate and the organic extracts were dried, (MgS04) and concentrated in vacuo to give alcohol 1 E as an oil (19.8 g).
Figure imgf000027_0002
1 F
Methanesulfonyl chloride (2.3 mL, 0.029 mol) was added to a solution of alcohol 1 E (6.3 g, 0.029 mol) and triethylamine (8.7 mL, 0.062 mol) in
CH2CI2 (100 mL) at 0 °C under N2. This mixture was stirred at 0 °C for 30 min and poured onto ice/H2θ (200 mL). The resulting organic layer was dried (MgSO4) and concentrated in vacuo to give the mesylate derivative
1 F as an oil (6.5 g).
Figure imgf000027_0003
1G
A mixture of mesylate derivative 1 F (5.0 g, 0.017 mol), 2-(4-hydroxyphenyl)- 1 -ethanol (3.1 g. 0.020 mol), K2CO3 (10 g, 0.072) in DMF (200 mL) was heated at 80 °C under N2 for 48 h. The resulting mixture was cooled to 0 °C and diluted with CH2CI2 and filtered. The filter cake was washed with several portions of CH2CI2, concentrated in vacuo and purified by column chromatography (20% ethyl acetate/hexane) to give the alcohol derivative 1G as an oil (5.95 g).
Figure imgf000028_0001
1 H
Methanesulfonyl chloride (1.1 mL, 0.014 mol) was added dropwise to a solution of 1G (4.0 g, 0.012 mol). Et3N in CH2CI2 (100 mL) at 0 °C under N2. The reaction mixture was stirred for 30 min, an additional portion of methanesulfonyl chloride (0.5 mL, 0.007 mol) was added and the resulting mixture was stirred for another 2 h. Water was added and the resulting mixture was extracted with several portions of CH2CI2. The combined organic extracts were dried (Na2SO4) and concentrated in vacuo to give the mesylate derivative 1 H, as an oil (5.68 g).
Compound 1
1 -(2-Aminoethyl)pyrrolidine (262.64 mg, 2.3 mmol) was added to a stirred solution of mesylate derivative 1 H (888 mg, 2.143 mmol) in EtOH (50 mL) at room temperature under N∑. This mixture was heated at reflux for 16 h and concentrated in vacuo. The residue was purified by column chromatography (MeOH:Et3N:hexanes, 5:5:90) to give an oil (65 mg). Said oil was treated with oxalic acid to give the title compound as an oxalate salt: mp 144-46 °C; IR (KBr, cm-1) 2933, 2870, 1612, 1584; Anal. Calc'd for C29H4θN2θ-C2H2θ4-5H2θ: Calculated: C, 70.05; H, 8.15; N, 5.27 Found: C, 70.17; H, 8.21 ; N, 5.61
The compounds listed in Table A were prepared using the method of Example 1. The appropriately substituted cyclohexene analogs of 1A were prepared from commercial starting materials in the same manner as 1A. These analogs were converted to their corresponding analogs of 1G as in Example 1. Finally the corresponding analogs of 1 G were treated with known amines to give the compounds listed below. TABLE A
Figure imgf000029_0001
Figure imgf000030_0002
EXAMPLE 2
Figure imgf000030_0001
[N-[2-[1 -BENZYL(2-CYCLOHEXENYL)]]ETHYL]-4-CHLOROANILINE
MONOTOSYLATE'SESQIHYDRATE Compound 2
4-chloroaniline (267.1 mg, 2.1 mmol) and acetic acid (2 mL) was added to a solution of aldehyde 1 D in MeOH (100 mL) under N2 and the resulting mixture was stirred for 30 min. Sodium cyanoborohydride (131.96 mg, 2.1 mmol) was added and this mixture stirred for another 6 min. The resulting mixture was concentrated in vacuo. purified by column chromatography (4% ethyl acetate/hexane) and treated with toluene sulfonic acid in CH2CI2 to give the title compound as a solid: mp 91 -93 °C; IR (KBr, cm-1 ) 3025, 2957, 2929, 2969, 1494; Anal. Calc'd for C2iH24CINO-C7H8O3*0.2 5H20: Calculated: C, 66.92; H, 6.52; N, 2.79 Found: C, 66.98; H, 6.49; N, 2.85
The compounds listed in Table B were prepared using the method of Example 2. The appropriately substituted cyclohexene analogs of 1 D were prepared from commercial starting materials in the same manner as 1D. These analogs were treated with known amines to give the compounds listed below. TABLE B
Figure imgf000031_0001
C
Figure imgf000031_0004
EXAMPLE 3
Figure imgf000031_0002
3-[3-[4-[2-[1-BENZYL-(2-CYCLOHEXENYL)]]ETHOXY]PHENYL- PROPYLJAMINOETHYL-PYRROLIDINE MONOOXALATE MONOHYDRATE
Compound 3
Figure imgf000031_0003
A mixture of mesylate 1 F (5.0 g, 17.00 mmol) (K2CO3) (39 g) and 3-(4- hydroxyphenyl)-1-propanol (3.1 g, 20 mmol) was heated at 80 °C under N2 for 72 h. The mixture was cooled to 0 °C, CH2CI2 (100 mL) was added and the resulting precipitate was filtered. The combined filtrate was concentrated in vacuo and purified by column chromatography (20% ethyl acetate/hexane to give alcohol 3A as an oil (6.89 g).
Figure imgf000032_0001
3B Methanesulfonyl chloride (1.5 mL, 19.4 mmol) was added dropwise to a stirred solution of triethylamine (4 mL, 28.7 mmol) and alcohol 3A (4.2 g, 12.0 mmol) in CH2CI2 (100 mL) at O °C under N2. The resulting mixture was poured into ice/H2θ (170 mL) and the aqueous layer was extracted with several portions of CH2CI2. The combined organic layer was dried (Na2SO4) and concentrated in vacuo to give mesylate 3B as an oil (4.7 g).
Compound 3
A mixture of mesylate 3B (650 mg, 1.5 mmol), 1 -(2-aminoethyl)pyrrolidine (700 mg, 6.1 mmol), K2CO3 (3 g, 21.7 mmol) in xylene (50 mL) was heated to 120 °C for 16 h and concentrated in vacuo. The residue was purified by column chromatography (ethyl acetate:methanol:Et3N, 95:5:2) and treated with oxalic acid in ether to give the title compound as a solid: mp 152 (soften) ; IR (KBr, cm-1) 2933, 2867, 2834, 1641 , 1612; Anal. Calc'd for C3oH42N2O«C2H2O4'H2O: Calculated: C, 69.29; H, 8.36; N.5.05 Found: C, 69.33; H, 8.12; N, 5.27
The compounds listed in Table C were prepared using the method of Example 3. The appropriately substituted cyclohexene analogs of 3B were prepared from commercial starting materials in the same manner as 3B. These analogs were treated with know amines to give the compounds listed below.
TABLE C
Figure imgf000032_0002
Figure imgf000032_0003
Figure imgf000033_0001
EXAMPLE 4
Figure imgf000034_0001
4-[3-[1 -BENZYL-(2-CYCLOHEXENYL)]PROPOXY]PHEYETHYLAMINE
MONOOXALATE HEMIHYDRATE
Compound 4
Figure imgf000034_0002
4A
KCN (1.8 g, 27.16 mmol) was added to a solution of mesylate derivative 1 F (4.0 g, 13.58 mmol) in DMSO (50 mL) at room temperature under N2. The resulting mixture was heated at 80 °C fro 16 h and partitioned between ether and H2O. The organic layer was washed with several portions of H2O and concentrated in vacuo. The residue was purified by column chromatography using ethyl acetate :hexanes (5:95-10:90) as an eluent to give the nitrile 4A as an oil (2.3 g).
Figure imgf000034_0003
4B 6N NaOH (25 mL)was added to a solution of nitrile 4A (2.3 g, 8.5 mmol) in MeOH (130 mL) at room temperature under N2. This mixture was heated at at reflux for 16 h and concentrated in vacuo. The residue was treated with 6N HCI (150 mL) and H2O (50 mL) and extracted with several portions of CH2CI2. The organic layer was dried (MgSθ4) and concentrated in vacuo. The residue was purified by column chromatography using ethyl acetate :hexanes (5:95) to give the acid 4B as a solid (2.13 g).
Figure imgf000035_0001
LAH (1.0 g, 26.35 mmol) was added to a solution of acid 4B (2.13 g. 7.40 mmol) in THF (100 mL) at room temperature under N2 and the resulting mixture was stirred for 2 h. The reaction was cooled with ice and sat. K2CO3 (20 mL) was added. The resulting precipitate was removed and washed with several portions of CH2CI2. This filtrate was concentrated in vacuo to give the alcohol 4C as an oil (2.12 g).
Figure imgf000035_0002
4D
Methanesulfonyl chloride (7 mL, 9.2 mmol) was added dropwise to a stirred solution of alcohol 4D (2.12 g, 9.2 mmol), triethylamine (3 mL) and CH2CI2 (200 mL) at 0 °C under N2. The reaction mixture was stirred for 2 h and partitioned between H2O and CH2CI2. The resulting organic layer was dried (MgSO4) and concentrated in vacuo to give the mesylate 4D as an oil (4.39
9).
Figure imgf000035_0003
4E
A mixture of mesylate 4D (2.10 g, 6.7 mmol), 3-(4-hydroxyphenyl)-1-ethanol (1.4 g. 10.05 mmol), K2CO3 (4.0 g, 29.0 mmol) in DMF (100 mL) was heated at 100 °C for 24 h and concentrated in vacuo. The residue was purified by column chromatography using ethyl acetate :hexanes (5:95-30:70) as an eluent to give the alcohol 4E as an oil (1.2 g).
Figure imgf000036_0001
4F
Methanesulfonyl chloride (0.5 g, 3.78 mmol) was added dropwise to a solution of 4E (1.2 g, 3.43 mmol) in CH2CI2 (50 mL) at 0 °C under N2. The reaction mixture was stirred for 2h. Water was added and the resulting mixture was extracted with several portions of CH2CI2- The combined organic extracts were dried (Na2SU4) and concentrated in vacuo to give the mesylate derivative 4F, as an oil (1.28 g).
Compound 4
A mixture of ammonium hydroxide (3 mL), mesylate 4F (1.28 g, 2.94 mmol) in THF (20 mL) was placed in a sealed tube and heated at 100 °C for 16 h. The resulting mixture was partitioned between H2O and CH2CI2 and the organic layer was concentrated in vacuq. The residue was purified by column chromatography using triethylamine :MeOH:ethyl acetate (5:5:90) as an eluent and treated with oxalic acid and ether to give the title compound as a solid: mp 140-142 °C; IR (KBr, cm-1) 3083, 3027, 2989, 2836, 1700, 1652; Anal. Calc'd for C24H3ιNO«C2H2θ4*0.5 H2O:; Calculated: C, 69.62; H, 7.64; N, 3.12 Found: C, 69.52; H, 7.51 ; N, 3.12
The compounds in Table D were prepared using the method of Example 4. Mesylate 4F was treated with a commercially available amine to give the desired compound. TABLE D
Figure imgf000036_0002
Figure imgf000036_0003
E CXΛAMMIViPrLLEC 5 o
Figure imgf000037_0001
^ O
[4-[2-[1 -(3-CHLOROBENZYL)-(2-CYCLOHEXENYL)]]ETHOXY]
BENZYLAMINE MONOOXALATE
Compound 5
Figure imgf000037_0002
5A Di-t-butyldicarbonate (19.0 g, 87 mmol) was added dropwise to a stirred suspension of 4-hydroxybenzylamine (12.0 g, 85 mmol; US Pat 4,388,250) in THF at 0 °C. The reaction mixture was allowed to warm to room temperature, stirred for 16 h and concentrated in vacuo. The residue was stirred with H2O (250 mL) for 16 h and the resulting precipitate was isolated an dried in vacuo to give the alcohol 5A as a solid (21 g).
Compound 5 A mixture of the 3-chlorobenzyl derivative of mesylatel F (2.35 g, 7.92 mmol), alcohol 5A (1.95 g, 8.7 mmol) and K2CO3 (2.5 g) in DMF was heated at 80 °C for 16 h. The reaction mixture was filtered, concentrated in vacuo and purified by column chromatography using ethyl acetate :hexanes (4:96-10:90) to give an oil. This oil was dissloved in 6 N HCI. heated to reflux for 16 h and concentrated in vacuo. The residue was purified by column chromatography using Et3N:MEOH:ethyl acetate (5:2:93) and treated with oxalic acid to give the title compound as a solid: mp 150-153 °C; IR (KBr, cm-1): 3100. 3050, 2930. 1621 , 1615; Anal. Calc'd for C22H26CINO;C2H2O4; Calculated: C, 64.64; H, 6.33; N, 3.14 Found: C, 64.55; H, 6.32; N, 3.10
The compounds listed in Table E were prepared using the method of Example 5. The appropriately substituted alcohol derivatives 5A were prepared in the same manner as 5A and reacted with the appropriately substituted mesylate derivatives 1 F as in Example 5. TABLE E
Figure imgf000038_0001
Figure imgf000038_0004
EXAMPLE 6
Figure imgf000038_0002
4-[2-[1 -(3-CHLOROBENZYL)-(2-CYCLOHEXENYL)]ETHOXY]
BENZYLGUANDINE MONONITRATE
Compound 6
Figure imgf000038_0003
6A
Aminoguanidine nitrate (14.0, 0.1 mol) was added portionwise to a stirred mixture of 2,4-pentanedione (10 mL, 0.1 mol) in H2O (25 mL) and EtOH (25 mL) at reflux. The resultant mixture was stirred at reflux for 2.5 h, cooled to room temperature and filtered to give the amidino pyrazole derivative 6A as a solid (9.4 g). Compound 6
Derivative 6A (200.5 mg, ??), compound 5, and triethylamine (1 mL) in DMF (15 mL) was heated at 60 °C for 16 h and concentrated in vacuo. The residue was washed with several portions of ether and stirred in H2O for 8 h. The resulting solid was isolated and dried in vacuo to give the title compound as a solid: mp 128-130 °C; IR (KBr, cm-1): 3380, 3190, 2938, 1669, 1626; Anal. Calc'd for C23H28CIN3OΗNO3
Calculated: C, 59.93; H, 6.34; N, 12.15 Found: C, 59.81 ; H, 6.22; N, 11.79
The compounds listed in Table F were prepared using the method of Example 6 using the appropriately substituted amines prepared as described supra.
TABLE F
^ ^
Figure imgf000039_0001
Figure imgf000039_0002
EXAMPLE 7
Figure imgf000040_0002
[4-[2-[1 -(3-CHLOROBENZYL)-(2-CYCLOHEXENYL)]]ETHOXY]BENZAMIDE
Compound 7
A mixture of the 3-chlorobenzyl derivative of mesylatel F (0.87 g, 2.7 mmol), 4- hydroxybenzamide(0.37 g, 3.7 mmol) and K2CO3 (0.7 g) in DMF (10 mL) was heated at 80 °C for 5 h, maintained at room temperature for 16 h and concentrated in vacuo. The residue was diluted with H2O and extracted with several portions of ethyl acetate.. The combined organic layers were dried (MgS04) and concentrated in vacuo. The residue was purified by column chromatography using ethyl acetate:hexanes (40:60) to give the title compound as a solid: mp 82-84 °C; Anal. Calc'd for C22H24CINO2; Calculated: C, 71.44; H. 6.54; N. 3.79 Found: C. 71.05; H, 6.67; N, 3.47
The compounds listed in Table G were prepared using the method of Example 7. TABLE G
Figure imgf000040_0001
Figure imgf000040_0003
EXAMPLE 8
Figure imgf000041_0001
2-[[2-(1 -BENZYLCYCLOHEX-2-ENYL)ETHYL]MERCAPTO]- 5-[3-(METHYLAMINO)PROPYL]PYRIMIDINE MONOOXALATE
Compound 8
Figure imgf000041_0002
8A Thiourea (3.4 g, 45 mmol) was added to a prepared solution of sodiumisopropoxide (Na:lsOH, 2.0 g:150 mL) at room temperature and the resulting mixture was stirred for 15 min. 5,6-Dihydro-4H-pyran-3- carboxaldehyde (5 g, 45 mmol) was added and this mixture was stirred at reflux overnight, cooled to room temperature and concentrated in vacuo. The residue was purified by column chromatography using MeOH: CH2CI2 (10:90) as an eluent and recrystallization from EtOH to give alcohol 8A as a solid (4.25 g).
Figure imgf000041_0003
8B
A mixture of mesylate 1 F (2.4 g, 8.2 mmol), 8A (1.4 g, 8.2 mmol) and K2CO3 (2.6 g) in DMF (15 mL) was heated to 68 °C for 1 h. An additional portion of DMF was added (20 mL) and the reaction mixture was heated at 65 °C for another 30. The resulting mixture was concentrated in vacuo. diluted with H2θand extracted with several portions of ethyl acetate. The combined organic extracts were dried (MgSO4), concentrated in vacuo and purified by column chromatography using MeOH:CH2Cl2 (5:95) as an eluent to give the coupled alcohol 8B (2.26 g).
Figure imgf000042_0001
8C
Methanesulfonyl chloride (0.15 mL, 1.94 mmol) was added to a stirred solution of triethylamine (0.5mL, 3.6 mmol), 11 B (0.7 g, 1.97 mmol) in CH2CI2 (30 mL) at 0 °C. After 15 min the reaction mixture was poured into H2O and extracted with several portions of CH2CI2. The combined extracts were dried (MgS04), concentrated in vacuo and purified by column chromatography using ether.hexanes (30:70) as an eluent to give the mesylate 11C.
Compound 8 A mixture of 11C (0.63 g. 1.4 mmol) and aqueous methylamine (5 mL) in THF (15 mL) was placed in a sealed tube and heated at 78-80 °C for 5 h and concentrated in vacuo. The residue was diluted with ethyl acetate and washed with water. The organic extract was dried (MgSO4), concentrated in vacuo and purified by column chromatography using MeOH:CH2Cl2 (10:90). The isolated material was treated with oxalic acid in acetone to give the title compound as a solid: mp 143-145 °C; IR (KBr. cm-1): 3064. 1705; Anal. Calc'd for
C23H3lN3S»C2H2O4 Calculated: C, 63.67; H, 7.05; N, 8.91 Found: C, 63.60; H, 6.93; N, 8.73
The compounds listed in Table H were prepared using the method of Example 8. The required starting materials,3-(2-hydroxypyrimidinyl)-1- propanol, and 3-(4-pyrazolyl)-1 -propanol were prepared by treating 5,6- dihydro-4H-pyran-3-carboxaldehyde with either guanidine hydrochloride or hydrazine in the manner used to prepare 8A. Those derivatives were treated in the same manner as 8A to give the desired compounds. TABLE H
Figure imgf000043_0003
Figure imgf000043_0004
TABLE I
Q
Figure imgf000043_0001
Figure imgf000043_0006
TABLE J
Figure imgf000043_0005
EXAMPLE 9
Figure imgf000044_0001
4-[2-[1 -BENZYL(2-CYCLOHEXENYL)]]ETHOXY-3- METHOXYBENZYLAMINE MONOOXALATE HEMIHYDRATE
Compound 9
α
Figure imgf000044_0002
δ p 9A 4-Hydroxy-3-methoxybenzonitrile (2.56 g, 17.2 mmol) followed by K2CO3 (10 g) were slowly added to a solution of mesylate 1 F (5.03 g. 17.09 mmol) in EtOH at 100 °C under N2. This mixture was heated at reflux for 36 h , filtered and partitioned between H2O and CH2CI2. The combined organic extracts were dried (MgSθ4) and purified by column chromatography using ethyl acetate:hexanes (5:95-40:60) to give the nitrile 9A as an oil.
Compound 9 LAH (1.1 g, 38 mmol) was added to a stirred solution of nitrile 12A (971 mg, 2.8 mmol) in THF (200 mL) at 0 °C under N2. The ice bath was removed and the reaction mixture was allowed warm up to room temperature over 2h and heated at 80 °C for 16 h. The reaction was quenched by the addition of K2CO3 and the resulting white precipitate was removed by filtration through celite and washed with CH2CI2. The filtrate was concentrated in vacuo and treated with ether an oxalic acid to give the title compound as a solid: mp 135-137 °C; IR (KBr, cm-1): 3082, 3063, 3004, 2935, 1608, 1593, 1518; Anal. Calc'd for C23H29N2O-C2H2θ4«0.5H2θ;
Calculated: C, 66.65; H, 7.16; N, 3.11 Found: C. 66.62; H, 7.03; N, 3.14 EXAMPLE 10
Figure imgf000045_0001
2-[4-[2-[1 -BENZYL-2-(2-CYCLOHEXENYL)]]ETHYLAMINOPHENYL]-N- ETHYLETHYLAMINE MONOOXALATE HEMIHYDRATE Compound 10
A suspension of LAH (400 mg, 10 mmol) and ether (100 mL) was added to a stirred solution of compound 74 (1.01 g, 2.6 mmol) in THF (20 mL) at 0°C under N2. After addition the reaction mixture was allowed to warm to room temperature and was stirred overnight. The reaction was quenched by the addition of K2CO3 and the resulting white precipitate was removed by filtration through celite and washed with CH2CI2. The filtrate was concentrated in vacuo. purified by column chromatography using ethyl acetate :Et3N:MEOH (96:5:1 ) and treated with oxalic acid to give the title compound as a solid: mp 154-157 °C; IR (KBr, cm-1): 3058, 3026, 2979, 2861 , 1702, 1617; Anal. Calc'd for C25H34N2-C2H2O4'0.5H2O; Calculated: C, 70.25; H, 8.08; N, 6.07 Found: C, 70.68; H, 8.16; N, 5.73
EXAMPLE 11
Figure imgf000045_0002
4-[4-[2-[1-BENZYL(2-CYCLOHEXENYL)]]ETHOXY]PHENYLBUTYLAMINE
MONOOXALATE HEMIHYDRATE Compound 11
Figure imgf000045_0003
11A A mixture of mesylate 3B (619 mg, 1.42 mmol). KCN (450 mg, 6.8 mmol) and Na (15 mg) in DMSO (20 mL) was stirred at 80 °C under N2 for 16 h. The resulting mixture was diluted with ether, washed with several portions of H2O. The combined organic extracts were dried (Na2SO4), concentrated in vacuo and purified by column chromatography using ethyl acetate :hexanes (10:90) to give nitrile 1 1 A as a solid (275 mg).
Compound 1 1 A suspension of LAH (200 mg. 5.3 mmol) in ether (50 mL) was added to a solution of 14A (275 mg, 0.75 mmol) in ether (50 mL) under N2 and the resulting mixture was stirred for 30 min. The reaction was quenched with K2CO3 and H2O and the resulting precipitate was filtered through celite and washed with CH2CI2. The combined filtrate was concentrated in vacuo and treated with oxalic acid in ether to give the title compound as a solid: mp 162-165°C; 3051 , 3016, 2957, 2835, 1718, 1622; Anal. Calc'd for C25H33NO»C2H2O4'0.5H2O; Calculated: C, 70.10; H, 7.84; N. 3.03 Found: C, 69.90; H, 7.94; N, 2.99
EXAMPLE 12
Figure imgf000046_0001
3-[4-[2-[1-(4-FLUOROPHENYL)-2-CYCLOHEXENYL]ETHOXY]-PHENYL] PROPIONIC ACID MONOCYCLOHEXYLAMINE SEQUIHYDRATE
Compound 12
Freshly prepared Jones Reagent was added over 10 min to a solution of the 4- fluoro derivative of alcohol 3A (344 mg, 1.0 mmol) in acetone (20 mL) at 0 °C. After addition was complete, the reaction mixture was allowed to warm up to room temperature and was stirred for 3 h. MeOH (5 mL) was added, the resulting mixture was concentrated in vacuo and H2O was added. The oily residue was washed with several portions of CH2CI2, and the combined organic layer was dried (Na2SO4), concentrated in vacuo and treated with cyclohexylamine and ether to give the title compound as a solid: mp 138-141 °C; IR (KBr, cm -1): 2943, 2903, 2835, 1637; Anal. Calc'd for C23H25F03'C6H13NO.25H2O; Calculated: C, 73.78; H, 8.22; N, 2.97 Found: C, 73.80; H, 8.18; N, 2.97 EXAMPLE 13
Figure imgf000047_0001
4-[2-(1 -BENZYLCYCLOHEXYL)ETHOXY]PHENYLAMINE MONOOXALATE 0.75 HYDRATE Compound 13
A suspension of 4-[2-[1 -benzyl-2-(cyclohexenyl)J]ethoxyphenethyt-2-t-butyl carbamate (100 mg, 0.23 mmol: prepared by the method of Example 1 ), RO2 (15 mg) in EtOH was agitated and treated with H2 at 55 psi for 60 h. The mixture was filtered through celite, which was rinsed with CH2CI2. The filtrate was concentrated in vacuo to give the amino protected saturated compound. This material was dissolved in TFA (10 mL), stirred at room temperature for 8 h and concentrated in vacuo. The residue partitioned between 1 N NaOH and CH2CI2 and the resulting organic extracts were dried (Na2SO4) and concentrated in vacuo. The residue was dissolved in ether (25 mL) and treated with oxalic acid to give the title compound as a solid: mp 167-169 °C; IR (KBr, cm-1): 2943, 2903, 2835, 1637; Anal. Calc'd for C23H3iNO'C2H2O4*0.75H2O; Calculated: C, 68.08; H, 7.88; N, 3.18 Found: C, 67.99; H, 7.66; N, 3.03
EXAMPLE 14
Figure imgf000047_0002
H
N-ISOPROPYL-[2-[4-[1-(3-PHENYLPROPYL)-2-CYCLOHEXAN]]- ETHOXY]PHENYLAMINE MONOOXALATE 0.25 HYDRATE
Compound 14
An agitated suspension of 2-[4-[2-[1-(3-phenylpropyl)-2-cyclohexenyl]]ethoxy]- phenylethylamine hemioxalate monohydrate (205 mg, 2.08 mmol) 6N HCI (3 mL). Ptθ2 (10 mg) and acetone (5 mL) in EtOH (25 mL) was treated with H2 at 45 psi for 8 h. The resulting mixture was filtered through celite and the filter cake was washed with CH2CI2. The combined organic extracts were washed with 1 N NaOH, dried (Na2SO4) and concentrated in vacuo. The residue was dissolved in ether and treated with oxalic acid to give the title compound as a solid: mp 135- 137 °C; IR (KBr. cm-i): 2851 , 1703. 1613; Anal. Calc'd for C28H4iNO'C2H2O4'0.25H2O; Calculated: C, 71.75; H, 8.73; N, 2.79 Found: C, 71.56; H, 9.09; N, 2.76
EXAMPLE 15
Figure imgf000048_0001
3-[4-[2-[3-(2-HYDROXYETHYL)CYCLOHEXENYL]ETHOXYL-PHENYL]- N-METHYLPROPYAMINE MONOOXALATE HEMIHYDRATE Compound 15
Figure imgf000048_0002
15A 3-Ethoxymethyl-2-cyclohexen-1 -one ( 15.0 g, 82 mmol) was added dropwise to a stirred suspension of LAH (6.0 g, 164 mmol) in ehter (300 mL) at 0 °C under N2. The mixture was stirred for 5 h, quenched by adding aqueous K2CO3, stirred for another 16 h and filtered through celite. The organic layer was dried (Na2SO4) and concentrated in vacuo to give the alcohol 14A as an oil (8.66 g).
Figure imgf000048_0003
15B Sodium hydride (270 mg, 11.25 mmol) was added in portions to a stirred solution of 15A (1.0 g, 7.04 mmol) in THF (150 mL) at room temperature under N2. After 30 min of stirring, phenyl vinyl sulfoxide (2.64 g, 17.6 mmol) was added and the resulting mixture was stirred for 16 h. The reaction was quenched with H2O, extracted with successive portions of ether as well as ethyl acetate and the combined organic extracts were concentrated in vacuo to give 15B as an oil (5.6 g).
Figure imgf000049_0001
A stirred mixture of NaHCO3 (5.0 g), 15B (5.6, 12.55 mmol) in decalin (50 mL) was heated at 180 °C for 4 h and filtered through celite. The filter cake was washed with CH2CI2 and the filtrate was concentrated in vacuo and purified by distillation to give the aldehyde derivative 15C as an oil (585 mg).
Figure imgf000049_0002
15D
A solution of 15C (222.3 mg, 2.99 mmol) in EtOH (100 mL) was added over 1.5 h to a stirred slurry of NaBH4 (110.6 mg, 2.99 mmol) at 0 CC. The resulting mixture was stirred for 4 h poured onto ice/H2θ (100 mL), concentrated in vacuo and partitioned between H2O and CH2CI2. The resulting organic layer was dried (Na2SO4) and concentrated in vacuo to give the alcohol 15 D as a crude oil (430 mg).
Figure imgf000049_0003
15E Methanesulfonyl chloride (222.3 mg, 1.95 mmol) was added dropwise to a stirred solution of 15D (380 mg, 1.94 mmol) and triethylamine (4 mL) in CH2CI2 (150 mL) at 0 °C under N2. This mixture was stirred for 1 h and partitioned between H2O and CH2CI2. The organic layer was dried (Na2SO4) and concentrated in vacuo to give mesylate 15E as an oil (612 mg).
Figure imgf000050_0001
15F
A mixture of 15E (612 mg, 2.23 mmol), K2CO3 (100 mg) and 3-(4- hydroxyphenyl)-1-propanol (407.7 mg. 2.68 mmol) in DMF (150 mL) was heated at 80 °C under N2 for 16 h. The resulting mixture was cooled to 0 °C, diluted with CH2CI2, filtered and purified by column chromatography (EtOAc:hexanes, 20:80) to give the aromatic alcohol 15F as an oil (183 mg).
Figure imgf000050_0002
15G
Methanesulfonyl chloride (70 mg, 0.56 mmol) was added dropwise to a stirred solution of 15F (183 mg, 0.55 mmol) and triethylamine (2 mL) in CH2CI2 (100 mL) at 0 °C under N2. This mixture was stirred for 15 h and partitioned between H2O and CH2CI2. The resulting organic layer was separated, dried (Na2S04) and concentrated in vacuo to give the mesylate 15 G as an oil (180 mg).
Figure imgf000050_0003
15H A mixture of 10% CH3NH2/THF (3 mL), 15G (180 mg, 0.44 mmol) in THF (10 mL) was placed in a sealed tube and heated at 70 °C for 16 h. The mixture was partitioned between H2O and CH2CI2 and the organic layer was separated and concentrated in vacuo. The residue was purified by column chromatography (triethylamine:MeOH:ethyl acetate; 5:10:85) to give amine 15H as a pale yellow oil (i 10 mg). Compound 15 Amine 15H (110 mg) was treated with oxalic acid and ether to give title compound as a solid: mp 115-117 °C; IR (KBr, cm-i): 3010, 3002, 2938; Anal. Calc'd for C2oH3iNO2»C2H204O.5H2O; Calculated: C, 63.44; H, 8.23; N, 3.36 Found: C, 63.47; H, 8.06; N, 3.36
EXAMPLE 16
Figure imgf000051_0001
A 4-{2-[1 -(4-NITROBENZYL)CYCLOHEXYL]ETHOXY)PHENETHYLAMINE
MONOOXALATE HEMIHYDRATE Compound 16
Figure imgf000051_0002
16A
A solution of alcohol 1 E (1.0 g, 4.65 mmol) and acetic anhydride (4 mL) in CH2CI2 (50 mL) was stirred at room temperature of 30 min. DMAP (10 mg) was added and this mixture was stirred for 1 h and diluted with CH2CI2. The resulting mixture was washed with water and the combined organic extracts were dried (Na2SO4) and concentrated in vacuo to give acetate 16A as an oil (1.2 g).
Figure imgf000051_0003
16B A mixture of 16B (800 mg, 3.10 mmol) acetic acid (2 mL) and RO2 (20 mg) in EtOH (25 mL) was placed on a hydrogenation apparatus and treated with H2 at 55 psi for 6 h. The resulting mixture was filtered through celite and the filter cake was washed with CH2CI2. The combined organic extracts were concentrated in vacuo to give the saturated derivative 16B as an oil (510 mg).
Figure imgf000052_0001
16C
A mixture of 16C (510 mg, 1.96 mmol) and HNO3/H2SO4 (1.2/0.64 mL) at O °C under N2 was stirred for 30 min. The mixture was partitioned between aq. NaOH and ether. The organic layer was dried (Na2SO4) and purified by column chromotography using ethyl acetate :hexane (10:90) as an eluent to give the nitro intermediate 16C as a solid (350 mg).
Figure imgf000052_0002
16D
A solution of aqueous K2CO3 (20 mg/10 mL) was added to a stirred solution of 16C (350 mg) in MeOH (50 mL). This mixture was stirred for 1 h, concentrated in vacuo and partitioned between H2O and ethyl acetate. The resulting organic layer was dried (Na2SO4) and concentrated in vacuo to give alcohol 16D as an oil (300 mg).
Compound 16 Alcohol 16D was treated in the same manner, following the same reaction sequence as intermediate 1 E of Example 1 to give Compound 16 as a solid:mp 120-123 °C; IR (KBr, cm-1): 2939, 1298, 1238; Anal. Calc'd for C23H3oN2θ3'C2H2θ4O.5H2θ ; Calculated: C, 62.36; H, 6.91 ; N, 5.82 Found: C, 62.12; H, 6.95; N, 6.21

Claims

CLAIMS We Claim:
1. An antimicrobial compound having activity as a histidine protein kinase inhibitor selected from those of the Formula I:
Figure imgf000053_0001
I wherein:
R-l is selected from a branched or unbranched (Ci -Cβjalkyl, (C-i -Cβ) hydroxyalkyi, and a moiety of the formula:
Figure imgf000053_0002
wherein: p is an integer from 0-6; and R3 , R4 and R5 are independently selected from hydrogen, halo, (C-|- C4) alkyl, (C1-C4) alkoxy, hydroxy, hydroxyalkyi, amino, (C1-C4) alkylamino, and nitro;
n is an integer from 1-6;
q is an integer from 0-2;
X is selected from NH, 0 and S;
R2 is selected from phenyl and a heterocyclic moiety wherein the heterocyclic moiety is a monocyclic heterocyclic group having 5 or 6 ring atoms and 1-4 nitrogen, oxygen, or sulfur atoms and is saturated or unsaturated, -and wherein the phenyl or heterocyclic moiety is substituted with amino, moieties of the formula:
Figure imgf000054_0001
carboxy, carboxy(Cι-C6)alkyl, (Ci-C6)alkylcart>oxy, or a moiety of the formula:
Figure imgf000054_0002
and, optionally, 1 -3 substituents selected from oxo, halo, trifluoromethyl, hydroxy, -(Ci-Cβ) alkyl and (Ci-Cβ) alkoxy;
wherein Re is selected from hydrogen and (Ci -Cβ)alkyl;
R7 is selected from hydrogen, (Ci-Cβ ) alkyl, (C3-C6) cycloalkyl, (C1-C-6) hydroxyalkyi, (Cι-C6)acyl, a moiety of the formula:
Figure imgf000054_0003
and a moiety of the formula
"(CH2)m "^8
wherein m is an integer from 1-4; and
Rβ is selected from amino, amino(Cι -Cβ)alkyl, amino((Cι-C6)alkyl)2, an aryl group and a heterocyclic group wherein the aryl group is a monocyclic or bicyclic aromatic hydrocarbon group having from 6 to 10 carbon atoms and the heterocyclic group is a monocyclic or bicyclic group of 4-10 ring atoms wherein the heteroatom or heteratoms are selected from 1-4 oxygen, nitrogen or sulfur atoms and each ring of the heterocycle is composed of 4-6 atoms and is saturated or unsaturated; and the pharmaceutically acceptable salts thereof.
2. A compound according to claim 1 wherein Ri is selected from branched or unbranched (Ci - C6) alkyl, (Ci - CQ) hydroxyalkyi. and a moiety of the formula:
Figure imgf000055_0001
wherein :
p is an integer from 0-6;
and R3, R4 and R5 are independently selected from hydrogen, halo, (Ci - C4) alkyl, and (Ci - C4) alkoxy;
n is an integer from 1 -3;
X is NH, O or S:
R2 is selected from phenyl, pyrimidine, and pyrazole and R2 is substituted with amino, moieties of the formula:
Figure imgf000055_0002
carboxy, (Cι-C6)alkylcarboxy, carboxy(Ci-C6)alkyl or a moiety of the formula:
Figure imgf000055_0003
and, optionally, 1-3 substituents selected from oxo, halo, trifluoromethyl, hydroxy, -(C1-C6) alkyl and (C1-C6) alkoxy; wherein R6 is selected from hydrogen and (Cι -C-6)alkyl; and R7 is selected from hydrogen, (Ci - C6) alkyl. (C4-C6) cycloalkyl, (C1-C6) hydroxyalkyi, a moiety of the formula :
Figure imgf000056_0003
and a moiety of the formula: -(CH2)m -R8
wherein m is an integer from 1-4; and
R8 is selected from amino, amino(Cι -CβJalkyl, phenyl, benzyl, pyrrolidine, morpholine, and indole;
and the pharmaceutically acceptable salts thereof.
3. A compound according to claim 2 wherein R1 is benzyl optionally substituted with one to three substituents independently selected from halo, (Cι -C-4)alkyl, and (Cι-C4)alkoxy;
n is the integer 2;
X is selected from O and NH2;
R2 is phenyl substituted with amino or a moiety selected from the formula:
Figure imgf000056_0001
and optionally substituted with 1-2 substituents selected from halo, trifluoromethyl and hydroxy;
wherein Re is selected from hydrogen and (Cι -C6)alkyl and R7 is selected from hydrogen, (Ci -C6)alkyl, (C4-C6)cycloalkyl, (C1-C6) hydroxyalkyi and a moiety selected from those of the formula:
Figure imgf000056_0002
wherein m is an integer from 1-2 and Re is selected from amino, amino(Cι - C6)alkyl, phenyl, benzyl, pyrrolidine, morpholine and indole,
and the pharmaceutically acceptable salts thereof.
4. A compound according to claim 3 wherein :
X is oxygen,
R2 is phenyl substituted with a moiety selected from those of the formula:
Figure imgf000057_0001
R6 and R7 are both hydrogen and Ri , and n are as defined in claim 3.
5. The compound according to claim 1, [4-[2-[1-(3-CHLOROBENZYL)-(2- CYCLOHEXENYL)]]ETHOXY] BENZYLAMINE MONOOXALATE.
6. The compound according to claim 1 , 4-[2-[1-{3-CHLOROBENZYL)-(2- CYCLOHEXENYL)]ETHOXY]BENZYLGUANIDINE MONONITRATE.
7. The compound according to claim 1 , 3-[3-[4-[2-[1-BENZYL-(2- CYCLOHEXENYL)]]ETHOXY]PHENYL- PROPYL]AMINOETHYL-
PYRROLIDINE MONOOXALATE MONOHYDRATE.
8. The compound according to claim 1 ,4-(3-[1 -BENZYL-(2- CYCLOHEXENYL)]PROPOXY]PHEYETHYLAMINE MONOOXALATE HEMIHYDRATE.
9. The compound according to claim 1 , 4-[2-[1 -BENZYL(2- CYCLOHEXENYL)]]ETHOXY-3-METHOXYBENZYLAMINE MONOOXALATE HEMIHYDRATE.
10. The compound according to claim 1 , 2-[4-[2-[1 -BENZYL-2(2- CYCLOHEXENYL)]]ETHYLAMINOPHENYL]-N-ETHYLETHYLAMINE MONOOXALATE HEMIHYDRATE.
11. The compound according to claim 1 , 3-[4-[2-{1 -(4-FLUOROPHENYL)-2- CYCLOHEXENYL]ETHOXY]-PHENYL]PROPIONIC ACID MONOCYCLOHEXYLAMINE SEQUIHYDRATE.
12. The compound 4-[4-[2-[1 -BENZYL(2-
CYCLOHEXENYL)]]ETHOXY]PHENYLBUTYLAMINE MONOOXALATE HEMIHYDRATE.
13. The compound according to claim 1, N-[4-[2-[1-(3-CHLOROBENZYL)-(2- CYCLOHEXENYL)]ETHOXY]PHENYL]ETHYLGUANIDINE.
14. A pharmaceutical composition for treating bacterial infections comprising an effective amount of a compound selected from claim 1 in association with a pharmaceutically acceptable carrier.
15. A pharmaceutical composition for treating bacterial infections comprising an effective amount of a Compound selected from claim 2 in association with a pharmaceutically acceptable carrier.
16. A pharmaceutical composition for treating bacterial infections comprising an effective amount of a compound selected from claim 3 in association with a pharmaceutically acceptable carrier.
17. A pharmaceutical composition for treating bacterial infections comprising an effective amount of a compound selected from claim 4 in association with a pharmaceutically acceptable carrier.
18. A method of treating bacterial infections in mammals which comprises administering to said mammal an antibacterially effective amount of a compound selected from those of claim 1.
19. A method of treating bacterial infections in mammals which comprises administering to said mammal an antibacterially effective amount of a compound selected from those of claim 2.
20. A method of treating bacterial infections in mammals which comprises administering to said mammal an antibacterially effective amount of a compound selected from those of claim 3.
21. A method of treating bacterial infections in mammals which comprises administering to said mammal an antibacterially effective amount of a compound selected from those of claim 4.
22. A compound of the formula:
Figure imgf000059_0001
wherein Ri is selected from a branched or unbranched (Cι-C6)alkyl, (Ci Cβ) hydroxyalkyi, and a moiety of the formula:
Λ
Figure imgf000059_0002
wherein: p is an integer from 0-6; and R3 , R4 and R5 are independently selected from hydrogen, halo, (C1- C4) alkyl, (C1-C4) alkoxy, hydroxy, hydroxyalkyi, amino, (C1-C4) alkylamino, and nitro;
n is an integer from 1-6;
q is an integer from 0-2; and
X is selected from NH, 0 and S; and the pharmaceutically acceptable salts thereof.
23. A process for preparing a compound of claim 1 comprising reacting a compound of the formula II:
II
wherein Ri and n are as defined in claim 1 and W is a reactive leaving group, with a compound of the formula IV:
X' -(CH2)q -R2
IV wherein X' is hydroxy, a primary or secondary amine or thiol, and q and R2 are as defined in claim 1 , in an inert solvent at room temperature up to the boiling point of the solvent.
PCT/US1996/010357 1996-06-18 1996-06-18 2-disubstituted cyclohexenyl and cyclohexyl antimicrobial agents WO1997048675A1 (en)

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