WO1995000667A1 - Procedes ameliores pour detecter des sequences d'acides nucleiques - Google Patents
Procedes ameliores pour detecter des sequences d'acides nucleiques Download PDFInfo
- Publication number
- WO1995000667A1 WO1995000667A1 PCT/US1994/006855 US9406855W WO9500667A1 WO 1995000667 A1 WO1995000667 A1 WO 1995000667A1 US 9406855 W US9406855 W US 9406855W WO 9500667 A1 WO9500667 A1 WO 9500667A1
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- WIPO (PCT)
- Prior art keywords
- target
- probe
- rnase
- concentration
- reaction
- Prior art date
Links
- 150000007523 nucleic acids Chemical group 0.000 title claims description 44
- 238000000034 method Methods 0.000 title claims description 36
- 239000000523 sample Substances 0.000 claims abstract description 95
- 238000006243 chemical reaction Methods 0.000 claims abstract description 57
- 102100034343 Integrase Human genes 0.000 claims description 53
- 101710203526 Integrase Proteins 0.000 claims description 51
- 238000001514 detection method Methods 0.000 claims description 39
- 108020004707 nucleic acids Proteins 0.000 claims description 34
- 102000039446 nucleic acids Human genes 0.000 claims description 34
- 239000000126 substance Substances 0.000 claims description 34
- 230000015572 biosynthetic process Effects 0.000 claims description 24
- 108020004414 DNA Proteins 0.000 claims description 23
- 230000000694 effects Effects 0.000 claims description 20
- 239000012634 fragment Substances 0.000 claims description 17
- 239000011541 reaction mixture Substances 0.000 claims description 16
- 108091028043 Nucleic acid sequence Proteins 0.000 claims description 14
- 102000004190 Enzymes Human genes 0.000 claims description 13
- 108090000790 Enzymes Proteins 0.000 claims description 13
- 108020004711 Nucleic Acid Probes Proteins 0.000 claims description 12
- 239000002853 nucleic acid probe Substances 0.000 claims description 12
- 102000006382 Ribonucleases Human genes 0.000 claims description 11
- 108010083644 Ribonucleases Proteins 0.000 claims description 11
- 238000003776 cleavage reaction Methods 0.000 claims description 7
- 230000007017 scission Effects 0.000 claims description 7
- 230000000295 complement effect Effects 0.000 claims description 6
- 239000003550 marker Substances 0.000 claims description 6
- 108091034117 Oligonucleotide Proteins 0.000 claims description 5
- 102000053602 DNA Human genes 0.000 claims description 3
- 239000000872 buffer Substances 0.000 claims description 3
- 108020004511 Recombinant DNA Proteins 0.000 claims description 2
- 108091028664 Ribonucleotide Proteins 0.000 claims description 2
- 239000012472 biological sample Substances 0.000 claims description 2
- 239000002336 ribonucleotide Substances 0.000 claims description 2
- 125000002652 ribonucleotide group Chemical group 0.000 claims description 2
- 230000035945 sensitivity Effects 0.000 claims description 2
- 239000007787 solid Substances 0.000 claims description 2
- 108091032973 (ribonucleotides)n+m Proteins 0.000 claims 5
- 239000011535 reaction buffer Substances 0.000 claims 4
- XSQUKJJJFZCRTK-UHFFFAOYSA-N Urea Chemical compound NC(N)=O XSQUKJJJFZCRTK-UHFFFAOYSA-N 0.000 claims 3
- 239000004202 carbamide Substances 0.000 claims 3
- 239000012895 dilution Substances 0.000 claims 3
- 238000010790 dilution Methods 0.000 claims 3
- 239000007795 chemical reaction product Substances 0.000 claims 2
- 238000002372 labelling Methods 0.000 claims 2
- 230000035484 reaction time Effects 0.000 claims 2
- HRPVXLWXLXDGHG-UHFFFAOYSA-N Acrylamide Chemical compound NC(=O)C=C HRPVXLWXLXDGHG-UHFFFAOYSA-N 0.000 claims 1
- ZGTMUACCHSMWAC-UHFFFAOYSA-L EDTA disodium salt (anhydrous) Chemical compound [Na+].[Na+].OC(=O)CN(CC([O-])=O)CCN(CC(O)=O)CC([O-])=O ZGTMUACCHSMWAC-UHFFFAOYSA-L 0.000 claims 1
- 108091000080 Phosphotransferase Proteins 0.000 claims 1
- 239000007983 Tris buffer Substances 0.000 claims 1
- 230000001580 bacterial effect Effects 0.000 claims 1
- 210000000349 chromosome Anatomy 0.000 claims 1
- 239000005547 deoxyribonucleotide Substances 0.000 claims 1
- 125000002637 deoxyribonucleotide group Chemical group 0.000 claims 1
- 239000012154 double-distilled water Substances 0.000 claims 1
- 239000007788 liquid Substances 0.000 claims 1
- 102000020233 phosphotransferase Human genes 0.000 claims 1
- 229920002401 polyacrylamide Polymers 0.000 claims 1
- 239000000047 product Substances 0.000 claims 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 claims 1
- 230000003612 virological effect Effects 0.000 claims 1
- 230000001351 cycling effect Effects 0.000 abstract description 6
- 229920002477 rna polymer Polymers 0.000 description 18
- 241000894007 species Species 0.000 description 8
- 239000003153 chemical reaction reagent Substances 0.000 description 3
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 2
- TWRXJAOTZQYOKJ-UHFFFAOYSA-L Magnesium chloride Chemical compound [Mg+2].[Cl-].[Cl-] TWRXJAOTZQYOKJ-UHFFFAOYSA-L 0.000 description 2
- 238000009396 hybridization Methods 0.000 description 2
- 239000003446 ligand Substances 0.000 description 2
- 239000000203 mixture Substances 0.000 description 2
- 102000004169 proteins and genes Human genes 0.000 description 2
- 108090000623 proteins and genes Proteins 0.000 description 2
- 108090001008 Avidin Proteins 0.000 description 1
- 241000894006 Bacteria Species 0.000 description 1
- 108020003215 DNA Probes Proteins 0.000 description 1
- 239000003298 DNA probe Substances 0.000 description 1
- 241000206602 Eukaryota Species 0.000 description 1
- 108010092799 RNA-directed DNA polymerase Proteins 0.000 description 1
- 108010090804 Streptavidin Proteins 0.000 description 1
- 241000700605 Viruses Species 0.000 description 1
- 229960002685 biotin Drugs 0.000 description 1
- 235000020958 biotin Nutrition 0.000 description 1
- 239000011616 biotin Substances 0.000 description 1
- 239000003054 catalyst Substances 0.000 description 1
- 239000002299 complementary DNA Substances 0.000 description 1
- 230000009918 complex formation Effects 0.000 description 1
- 239000002131 composite material Substances 0.000 description 1
- 238000010586 diagram Methods 0.000 description 1
- 230000029087 digestion Effects 0.000 description 1
- 238000010494 dissociation reaction Methods 0.000 description 1
- 230000005593 dissociations Effects 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 229920002521 macromolecule Polymers 0.000 description 1
- 229910001629 magnesium chloride Inorganic materials 0.000 description 1
- 238000002844 melting Methods 0.000 description 1
- 230000008018 melting Effects 0.000 description 1
- 229930014626 natural product Natural products 0.000 description 1
- 239000002773 nucleotide Substances 0.000 description 1
- 125000003729 nucleotide group Chemical group 0.000 description 1
- 239000013612 plasmid Substances 0.000 description 1
- 230000003362 replicative effect Effects 0.000 description 1
- 108091008146 restriction endonucleases Proteins 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- 230000007704 transition Effects 0.000 description 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/26—Preparation of nitrogen-containing carbohydrates
- C12P19/28—N-glycosides
- C12P19/30—Nucleotides
- C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
Definitions
- the invention relates to the use of cycling probe reactions to detect the presence of nucleic acid sequences.
- CPR Cycling Probe Reaction
- a probe specific for a sequence to be identified hybridizes to a target single strand nucleic acid to form a duplex nucleic acid.
- the probe includes a scissile link which becomes susceptible to cleavage upon formation of the duplex.
- a DNA probe can include an RNA sequence segment. Formation of a duplex between such a probe and a single strand DNA molecule results in an RNA:DNA hybrid duplex.
- RNase H which cleaves the RNA strand of an RNA:DNA hybrid duplex, is used to cleave the target-bound probe. Detection is based on this hybridization-specific cleavage.
- the cleaved probe disassociates from the target and the target can enter the cycle with a new, uncleaved, probe.
- the invention features a method for detecting a single-stranded target nucleic acid.
- the method includes: a. providing a reaction mixture which includes the target nucleic acid, a complementary single-stranded nucleic acid probe, the probe being present in molar excess relative to the target and having the structure [NAj -R-NA2]n wherein NAj and NA2 are
- DNA sequences wherein R is a scissile nucleic acid linkage, and wherein n is an integer from 1 to 10, and RNase H, the RNase H being present at a chemical potential sufficient to substantially increase the rate of duplex formation over what would be formed in the absence of the RNase H, and allowing target-probe duplex to form; b. treating the target-probe duplex from step (a) so as to cleave the probe within a predetermined sequence of the scissile nucleic acid linkage and thereby form at least one intact DNA-containing oligonucleotide fragment from the probe, such fragment being, or being treated so as to be, no longer capable of remaining hybridized to the target nucleic acid; c. repeating the cycle of steps (a) and (b); and d. detecting the intact DNA-containing fragments so formed and thereby detecting the single-stranded target nucleic acid.
- reaction mixture which includes: a single-stranded target nucleic acid; a complementary single-stranded nucleic acid probe, the probe being present in molar excess relative to the target and having the structure [NA ⁇ -R-NA2] n wherein NAj and NA2 are DNA sequences, wherein R is a scissile nucleic acid linkage, and wherein n is an integer a RNase H, the RNase H being present at a chemical potential sufficient to substantially increase the rate of duplex formation over what would be formed in the absence of the RNase H.
- Fig. 1 is a diagram of an improved CPR.
- Fig. 2 is a depiction of a gel showing the products of an improved CPR.
- Tm refers to the midpoint of the duplex to single strand melting transition.
- the chemical potential of a reagent refers to the free energy change of a reaction mix when the reagent is added to the reaction mixture.
- Chemical potential is a more exact measure of the activity of a species in a given reaction under a given set of conditions and takes into account considerations such as the number a sites a species can react with and whether all molecules of a species are available for reactions.
- the chemical potential of the species can usually be most directly manipulated by changing the concentrations of a species.
- the unit of chemical potential is free-energy, e.g., of cal/mole or J/mol, but in the methods described herein determination of an absolute chemical potential is not required.
- Most of the methods disclosed herein require reaction mixtures in which the ratio of chemical potential between two species, or the difference between the chemical potential of two species, is required to be such that the chemical potential of the RNase H is sufficient to drive the reaction towards the duplex.
- Purified nucleic acid refers to a purified DNA or RNA.
- Purified DNA refers to DNA that is not immediately contiguous with both of the coding sequences with which it is immediately contiguous (i.e., one at the 5' end and one at the 3' end) in the naturally-occurring genome of the organism from which the DNA is derived.
- RNA refers to an RNA which is substantially free of another RNA sequence with which it is found in a cell which produces the RNA. A non- naturally occurring nucleic acid sequence is purified when it is substantially free of other sequences.
- Purified natural product refers to a product which is produced by an organism and which is substantially free of a macromolecule, e.g., a protein or a nucleic acid, with which it occurs in an organism from which it is derived.
- Product which does not naturally occur in living cells refers to a product which is not synthesized or produced by living cells or organisms.
- Methods of the invention allow CPR reactions to be driven by RNase H. As such, the rate of the reaction is controlled by the concentration or chemical potential of the RNase and not the probe or target nucleic acids.
- CPR probes The making and using of CPR probes is known to the art, see e.g., Duck et al. U.S. Patent No. 4, 876,187 or Duck et al. U.S. Patent No. 5,011,069.
- the nucleic acid probe which is useful in the practice of this invention comprises the structure:
- NA ⁇ and NA2 are nucleic acid sequences, wherein R is an RNA sequence; and wherein n is an integer from about 1 to about 10.
- NAj and NA2 in the nucleic acid probe independently comprise from about 0 to about 20 nucleotides, R comprises from about 1 to about 100 ribonucleotides, or more, and n is an integer from about 1 to about 10.
- NAj and NA2 in the nucleic acid probe are DNA sequences.
- NAj and NA2 in the nucleic acid probe are RNA sequences.
- the nucleic acid probe comprises a structure wherein NAj is either an RNA or DNA sequence.
- nicking the hybridized probe at predetermined RNA sequences is carried out with a double-stranded ribonuclease.
- ribonucleases nick or excise ribonucleic acid sequences from double-stranded DNA-RNA hybridized stands.
- An example of a ribonuclease useful in the practice of this invention is RNase H.
- Other ribonucleases and enzymes may be suitable to nick or excise RNA from RNA-DNA strands, such as Exo III and reverse transcriptase.
- the molecules of the present invention may have a detectable marker attached to one or more of the nucleic acid sequences, NAj or NA2.
- This marker is contemplated to be any molecule or reagent which is capable of being detected. Examples of such detectable molecules are radioisotopes, radiolabelled molecules, fluorescent molecules, fluorescent antibodies, enzymes, or chemiluminescent catalysts.
- Another suitable marker is a ligand capable of binding to specific proteins which have been tagged with an enzyme, fluorescent molecule or other detectable molecule.
- a suitable ligand is biotin, which will bind to avidin or streptavidin.
- the nucleic acid probe is. immobilized on a solid support.
- the nucleic acid probe is labeled with a detectable marker.
- the R portion described above may also be properly termed a scissile linkage in language consistent with usage in U.S. Patent No. 4,876,187. Such a linkage is capable of being cleaved or disrupted without cleaving or disrupting any nucleic acid sequence of the molecule itself or of the target nucleic acid molecule.
- such a scissile linkage i.e., R
- R is any connecting chemical structure which joins two nucleic acid sequences and which is capable of being selectively cleaved without cleavage of the nucleic acid sequences to which it is joined.
- the scissile linkage may be single bond or a multiple unit sequence.
- R denotes a ribonucleic acid (RNA) sequence.
- Probe Reaction In this reaction a probe hybridizes to a target to form a duplex.
- the probe includes a scissile link, which becomes susceptible to cleavage upon formation of a duplex.
- the probe can have an RNase sensitive segment. Formation of a duplex between such a probe and a single strand DNA molecule results in an RNA:DNA hybrid duplex.
- An enzyme which cleaves RNA:DNA hybrids, e.g., RNase H cleaves the probe only when it is bound to the target. Detection is based on this hybridization-specific cleavage.
- RNase binds the duplex to form a duplex: RNase complex. Cleavage results in a cleaved probe:target complex.
- the cleaved probe disassociates from the target and the target can enter the cycle with a new, uncleaved, probe.
- Methods of the invention can be used to improve the performance of this reaction. As often used, this scheme is inappropriate for detecting a target sequence when insufficient RNase H is present.
- probe concentration has been increased in attempts to drive the basic reaction to the right.
- increasing the chemical potential of RNase H in the reaction mix will also favor the formation of duplex. Since RNaseH dictates duplex:RNaseH complex formation increasing the potential of this species in the reaction mix will favor generation of duplex substrate and therefore of cleaved-probe (signal).
- the addition of RNase H can be used to increase sensitivity.
- the method can be used for detecting a single-stranded target nucleic acid.
- a reaction mixture is provided which includes the target nucleic acid, a complementary single-stranded nucleic acid probe, the probe being present in molar excess relative to the target and having the structure
- NAj and NA2 are DNA sequences, wherein R is a scissile nucleic acid linkage, and wherein n is an integer from 1 to 10, and RNase H.
- the RNase H is present at a chemical potential sufficient to substantially increase the rate of duplex formation over what would be formed in the absence of the RNase H. The mixture is maintained under conditions which allow target-probe duplex to form.
- the target-probe duplex from step (a) is treated so as to cleave the probe within a predetermined sequence of the scissile nucleic acid linkage and thereby form at least one intact DNA-containing oligonucleotide fragment from the probe, such fragment being, or being treated so as to be, no longer capable of remaining hybridized to the target nucleic acid.
- the cycle of steps (a) and (b) are then repeated and the intact DNA containing fragments so formed are detected to thereby detect the single-stranded target nucleic acid.
- the method is performed at a temperature above the Tm of the duplex.
- the temperature can be at least x C°, wherein x is 5, 10, 20, 30, 40, 50, 60, 70, or 80, above said Tm.
- the rate of duplex formation is increased by at least y fold, wherein y is 2, 5, 10, 50, 100, 500, 10 3 , 10 4 , 10 5 , 10 6 , by the addition of RNase H.
- the RNase H can be used to drive formation of duplex under conditions where the rate of duplex formation in the absence of RNase H would be substantially zero.
- the concentration, number of molecules of, or the chemical potential of, the RNase H is greater than the concentration, number of molecules present, or chemical potential of the probe, the target, both the probe and the target, the duplex, or the combination of the probe, the target, and the duplex, e.g., at least z fold greater, wherein z is at least 1, 2, 5, 10, 25, 50, 100, 500, 10 3 , 10 4 , 10 5 or, 10 6 .
- the concentration, number of molecules of, or the chemical potential of, the RNase H is sufficient to allow: detection of one target molecule in a biological sample, preferably with a CPR probe labeled with an activity of 40,000 cpm/ ⁇ l, using 20,000 cpm per reaction, detection of a target strand at a concentration of 10 ⁇ 5 pMole or less, preferably the detection being carried out with a CPR probe labeled with an activity of 40,000 cpm/ ⁇ l, using 20,000 cpm per reaction; detection of a target strand at a concentration of 10 ⁇ 6 pMole or less, preferably the detection being carried out with a CPR probe labeled with an activity of 40,000 cpm/ ⁇ l, using 20,000 cpm per reaction; detection of a target strand at a concentration of 10" ⁇ pMole or less, preferably the detection being carried out with a CPR probe labeled with an activity of 40,000 cpm/ ⁇ l, using 20,000 cpm per reaction
- the probe and the target can be present in substantially equal amount, concentration, number, or chemical potentials in said reaction mix.
- the ratio by weight, molarity, number, concentration, or chemical potential of the probe to the target can be less than or equal to 1:1, 2:1, 5:1, 10:1, 25:1, 50:1, 100:1, or 10 m :l, wherein m is an integer between 3 and 10, inclusive.
- the ratio by weight, molarity, number, concentration, or chemical potential of the RNase H to the single strand in the highest concentration can be greater than 1:1, 2:1, 5:1, 10:1, 25:1, 50:1, 100:1, or 10 m :l, wherein m is an integer between 3 and 10, inclusive.
- the RNase H will accelerate the rate of duplex formation at least n-fold, wherein n is 2, 5, 10, 50, 100, 500, 10 3 , 10 4 , 10 5 , 10 ⁇ .
- the chemical potential driving duplex formation is provided by a high concentration of RNase H.
- the RNAse H enzymatic activity cleaves the probe so as to produce a gapped duplex in which both double stranded regions are more unstable than the original probe: target duplex. Under appropriate experimental conditions this allows the reaction to proceed and cycle even though the reaction is performed at a temperature (65°C) well in excess of the Tm for the probe:target complex.
- reaction conditions The following reaction scheme was employed: 1 ⁇ L ofa 5' 3 2p labeled probe sequence (the probe is a composite DNA-RNA molecule having a central RNA region disposed between two terminal DNA regions, is 28 bases in length, and is complementary to the target sequence) was added to tubes containing 1 ⁇ l of target homologous DNA and 0.5 ⁇ l of a buffer composed of 50mM Tris-Cl/lOmM MgCl2 (pH7.5) and 2.5 ⁇ L of ddl-PjO. A lul aliquot of highly concentrated RNAse H was then added and samples placed at 65°C.
- RNAse H concentration was high enough to both facilitate formation of the duplex and to cleave the duplexes formed so as to create a situation where "cycling" occurred driven by the forward chemical potential for enzyme driven duplex formation and the backward potential for product dissociation (e.g., more than one probe could react with the same target).
- target concentration number of molecules was serially diluted in tenfold increments.
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- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Microbiology (AREA)
- Genetics & Genomics (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biochemistry (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Immunology (AREA)
- Physics & Mathematics (AREA)
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- General Chemical & Material Sciences (AREA)
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Abstract
Priority Applications (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
JP7502972A JPH09502084A (ja) | 1993-06-17 | 1994-06-16 | 核酸配列検出の改良方法 |
AU72088/94A AU7208894A (en) | 1993-06-17 | 1994-06-16 | Improved methods for detecting nucleic acid sequences |
BR9406898A BR9406898A (pt) | 1993-06-17 | 1994-06-16 | Métodos aperfeiçoados para a detecçao de sequencias de ácidos nucléicos |
KR1019950705800A KR960703175A (ko) | 1993-06-17 | 1994-06-16 | 핵산 서열의 개선된 검출 방법(Improved methods for detecting nucleic acid sequences) |
EP94921315A EP0708840A1 (fr) | 1993-06-17 | 1994-06-16 | Procedes ameliores pour detecter des sequences d'acides nucleiques |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US7875993A | 1993-06-17 | 1993-06-17 | |
US08/078,759 | 1993-06-17 | ||
US15353693A | 1993-11-17 | 1993-11-17 | |
US08/153,536 | 1993-11-17 |
Publications (1)
Publication Number | Publication Date |
---|---|
WO1995000667A1 true WO1995000667A1 (fr) | 1995-01-05 |
Family
ID=26760905
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US1994/006855 WO1995000667A1 (fr) | 1993-06-17 | 1994-06-16 | Procedes ameliores pour detecter des sequences d'acides nucleiques |
Country Status (8)
Country | Link |
---|---|
EP (1) | EP0708840A1 (fr) |
JP (1) | JPH09502084A (fr) |
KR (1) | KR960703175A (fr) |
CN (1) | CN1129461A (fr) |
AU (1) | AU7208894A (fr) |
BR (1) | BR9406898A (fr) |
CA (1) | CA2165545A1 (fr) |
WO (1) | WO1995000667A1 (fr) |
Cited By (17)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1995014106A3 (fr) * | 1993-11-17 | 1995-08-24 | Id Biomedical Corp | Detection cyclique par scission de sondes de sequences d'acides nucleiques |
WO1997011199A1 (fr) * | 1995-09-22 | 1997-03-27 | Lane Michael J | Reactions d'acide nucleique |
WO1999001571A3 (fr) * | 1997-07-03 | 1999-03-25 | Id Biomedical Corp | Compositions et procedes pour detecter des enterocoques resistant a la vancomycine en cyclant des |
WO2000063437A2 (fr) | 1999-04-20 | 2000-10-26 | Illumina, Inc. | Detection de reactions d'acide nucleique sur microsupports de billes en reseau |
US6503709B1 (en) | 1997-07-03 | 2003-01-07 | Id Biomedical Corporation | Methods for rapidly detecting methicillin resistant staphylococci |
US6858412B2 (en) | 2000-10-24 | 2005-02-22 | The Board Of Trustees Of The Leland Stanford Junior University | Direct multiplex characterization of genomic DNA |
US7056669B2 (en) | 1996-11-05 | 2006-06-06 | Clinical Micro Sensors, Inc. | AC methods for the detection of nucleic acids |
US7122314B2 (en) | 2002-01-30 | 2006-10-17 | Id Biomedical Corporation | Methods for detecting vancomycin-resistant microorganisms and compositions therefor |
US7125668B2 (en) | 1996-11-05 | 2006-10-24 | Clinical Micro Sensors, Inc. | Electrodes linked via conductive oligomers to nucleic acids |
DE202004021633U1 (de) | 2003-06-20 | 2009-11-26 | Illumina, Inc., San Diego | Zusammensetzungen zur Gesamtgenom-Amplifikation und Genotypisierung |
EP2246438A1 (fr) | 2001-07-12 | 2010-11-03 | Illumina, Inc. | Reactions multiplex d'acides nucléiques |
US7935481B1 (en) | 1999-07-26 | 2011-05-03 | Osmetech Technology Inc. | Sequence determination of nucleic acids using electronic detection |
US8883424B2 (en) | 1999-05-21 | 2014-11-11 | Illumina, Inc. | Use of microfluidic systems in the detection of target analytes using microsphere arrays |
US8906626B2 (en) | 2000-02-07 | 2014-12-09 | Illumina, Inc. | Multiplex nucleic acid reactions |
US9279148B2 (en) | 1999-04-20 | 2016-03-08 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
WO2018219997A1 (fr) | 2017-05-30 | 2018-12-06 | Roche Diagnostics Gmbh | Catalyseurs pour inverser des produits d'addition de formaldéhyde et des réticulations |
US20190127783A1 (en) * | 2016-04-27 | 2019-05-02 | Prominex, Inc. | Compositions and methods for the detection of nucleic acids |
Families Citing this family (2)
Publication number | Priority date | Publication date | Assignee | Title |
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CN101225434B (zh) * | 2007-01-18 | 2011-09-14 | 上海生物芯片有限公司 | Cpt基因芯片及其检测方法和应用 |
CN102002522B (zh) * | 2009-11-10 | 2014-07-09 | 复旦大学附属华山医院 | 一种检测肺炎支原体耐药突变的方法 |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5011769A (en) * | 1985-12-05 | 1991-04-30 | Meiogenics U.S. Limited Partnership | Methods for detecting nucleic acid sequences |
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1994
- 1994-06-16 KR KR1019950705800A patent/KR960703175A/ko not_active Withdrawn
- 1994-06-16 CA CA002165545A patent/CA2165545A1/fr not_active Abandoned
- 1994-06-16 EP EP94921315A patent/EP0708840A1/fr not_active Withdrawn
- 1994-06-16 CN CN94192876A patent/CN1129461A/zh active Pending
- 1994-06-16 BR BR9406898A patent/BR9406898A/pt not_active Application Discontinuation
- 1994-06-16 WO PCT/US1994/006855 patent/WO1995000667A1/fr not_active Application Discontinuation
- 1994-06-16 JP JP7502972A patent/JPH09502084A/ja active Pending
- 1994-06-16 AU AU72088/94A patent/AU7208894A/en not_active Abandoned
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5011769A (en) * | 1985-12-05 | 1991-04-30 | Meiogenics U.S. Limited Partnership | Methods for detecting nucleic acid sequences |
Non-Patent Citations (2)
Title |
---|
BIOTECHNIQUES, Volume 9, Number 2, issued 1990, DUCK et al.: "Probe Amplifier System Based on Chimeric Cycling Oligonucleotides", pages 142-147, see entire document. * |
SAMBROOK et al., "Molecular Cloning - A Laboratory Manual", published 1989 by COLD SPRING HARBOR LABORATORY PRESS (NY), pages 11.31 - 11.32, see entire document. * |
Cited By (29)
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US5660988A (en) * | 1993-11-17 | 1997-08-26 | Id Biomedical Corporation | Cycling probe cleavage detection of nucleic acid sequences |
WO1995014106A3 (fr) * | 1993-11-17 | 1995-08-24 | Id Biomedical Corp | Detection cyclique par scission de sondes de sequences d'acides nucleiques |
WO1997011199A1 (fr) * | 1995-09-22 | 1997-03-27 | Lane Michael J | Reactions d'acide nucleique |
US7056669B2 (en) | 1996-11-05 | 2006-06-06 | Clinical Micro Sensors, Inc. | AC methods for the detection of nucleic acids |
US7125668B2 (en) | 1996-11-05 | 2006-10-24 | Clinical Micro Sensors, Inc. | Electrodes linked via conductive oligomers to nucleic acids |
WO1999001571A3 (fr) * | 1997-07-03 | 1999-03-25 | Id Biomedical Corp | Compositions et procedes pour detecter des enterocoques resistant a la vancomycine en cyclant des |
US6274316B1 (en) | 1997-07-03 | 2001-08-14 | Id Biomedical Corporation | Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions |
US6503709B1 (en) | 1997-07-03 | 2003-01-07 | Id Biomedical Corporation | Methods for rapidly detecting methicillin resistant staphylococci |
WO2000063437A2 (fr) | 1999-04-20 | 2000-10-26 | Illumina, Inc. | Detection de reactions d'acide nucleique sur microsupports de billes en reseau |
EP1923471A1 (fr) | 1999-04-20 | 2008-05-21 | Illumina, Inc. | Détection de réactions d'acide nucléique sur les réseaux à perle |
US9441267B2 (en) | 1999-04-20 | 2016-09-13 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
EP2264189A1 (fr) | 1999-04-20 | 2010-12-22 | Illumina, Inc. | Détection de réactions d'acide nucléique sur les réseaux à perle |
US9279148B2 (en) | 1999-04-20 | 2016-03-08 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
US8883424B2 (en) | 1999-05-21 | 2014-11-11 | Illumina, Inc. | Use of microfluidic systems in the detection of target analytes using microsphere arrays |
US9289766B2 (en) | 1999-05-21 | 2016-03-22 | Illumina, Inc. | Use of microfluidic systems in the detection of target analytes using microsphere arrays |
US7935481B1 (en) | 1999-07-26 | 2011-05-03 | Osmetech Technology Inc. | Sequence determination of nucleic acids using electronic detection |
US10837059B2 (en) | 2000-02-07 | 2020-11-17 | Illumina, Inc. | Multiplex nucleic acid reactions |
US9850536B2 (en) | 2000-02-07 | 2017-12-26 | Illumina, Inc. | Multiplex nucleic acid reactions |
US8906626B2 (en) | 2000-02-07 | 2014-12-09 | Illumina, Inc. | Multiplex nucleic acid reactions |
US6858412B2 (en) | 2000-10-24 | 2005-02-22 | The Board Of Trustees Of The Leland Stanford Junior University | Direct multiplex characterization of genomic DNA |
US8383348B2 (en) | 2000-10-24 | 2013-02-26 | Board Of Trustees Of The Leland Stanford Junior University | Precircle probe nucleic acid amplification methods |
US7993880B2 (en) | 2000-10-24 | 2011-08-09 | The Board Of Trustees Of The Leland Stanford Junior University | Precircle probe nucleic acid amplification methods |
US7700323B2 (en) | 2000-10-24 | 2010-04-20 | The Board Of Trustees Of The Leland Stanford Junior University | Method for detecting and amplifying target DNA |
EP2246438A1 (fr) | 2001-07-12 | 2010-11-03 | Illumina, Inc. | Reactions multiplex d'acides nucléiques |
US7122314B2 (en) | 2002-01-30 | 2006-10-17 | Id Biomedical Corporation | Methods for detecting vancomycin-resistant microorganisms and compositions therefor |
EP2264188A1 (fr) | 2003-06-20 | 2010-12-22 | Illumina, Inc. | Methodes et compositions utiles pour l'amplification et le genotypage du genome tout entier |
DE202004021633U1 (de) | 2003-06-20 | 2009-11-26 | Illumina, Inc., San Diego | Zusammensetzungen zur Gesamtgenom-Amplifikation und Genotypisierung |
US20190127783A1 (en) * | 2016-04-27 | 2019-05-02 | Prominex, Inc. | Compositions and methods for the detection of nucleic acids |
WO2018219997A1 (fr) | 2017-05-30 | 2018-12-06 | Roche Diagnostics Gmbh | Catalyseurs pour inverser des produits d'addition de formaldéhyde et des réticulations |
Also Published As
Publication number | Publication date |
---|---|
BR9406898A (pt) | 1996-03-26 |
CN1129461A (zh) | 1996-08-21 |
KR960703175A (ko) | 1996-06-19 |
CA2165545A1 (fr) | 1995-01-05 |
AU7208894A (en) | 1995-01-17 |
EP0708840A1 (fr) | 1996-05-01 |
JPH09502084A (ja) | 1997-03-04 |
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