US9764018B2

US9764018B2 - Biosynthetic system that produces immunogenic polysaccharides in prokaryotic cells

Info

Publication number: US9764018B2
Application number: US14/462,261
Authority: US
Inventors: Michael Wacker; Charles Waechter
Original assignee: Glycovaxyn AG
Current assignee: GlaxoSmithKline Biologicals SA
Priority date: 2009-11-19
Filing date: 2014-08-18
Publication date: 2017-09-19
Anticipated expiration: 2030-11-16
Also published as: KR20120102086A; US20130028926A1; EP2501406A4; AU2010322454B2; JP2013511520A; US8846342B2; HRP20180338T1; CN102724997B; EP2501406A1; HUE038456T2; JP5968784B2; EP2501406B1; SI2501406T1; TR201803015T4; JP2017018098A; EP2501406B8; US20150190492A1; DK2501406T3; LT2501406T; PL2501406T3

Abstract

The invention is directed to bioconjugate vaccines comprising N-glycosylated proteins. Further, the present invention is directed to a recombinant prokaryotic biosynthetic system comprising nucleic acids encoding an epimerase that synthesizes an oligo- or polysaccharide having N-acetylgalactosamine at the reducing terminus. The invention is further directed to N-glycosylated proteins containing an oligo- or polysaccharide having N-acetylgalactosamine at the reducing terminus and an expression system and methods for producing such N-glycosylated proteins.

Description

CROSS-REFERENCE TO RELATED APPLICATION

This application claims the benefit under 35 U.S.C. §119(e) of U.S. Provisional Patent Application No. 61/272,931, filed Nov. 19, 2009, herein incorporated by reference in its entirety.

FIELD OF THE INVENTION

The present invention relates to the use of a biosynthetic system and proteins for preparing a vaccine. In addition, the invention relates to a recombinant prokaryotic biosynthetic system having an epimerase that initiates the synthesis of an oligo- or polysaccharide with a specified monosaccharide at the reducing terminus. The invention further relates to N-glycosylated proteins produced with glycans in an expression system and bioconjugate vaccines made from said N-glycosylated proteins comprising immunogenic glycans, and provides methods for producing N-glycosylated proteins.

BACKGROUND OF THE INVENTION

Glycoproteins are proteins that have one or more covalently attached sugar polymers. N-linked protein glycosylation is an essential and conserved process occurring in the endoplasmic reticulum of eukaryotic organisms. It is important for protein folding, oligomerization, stability, quality control, sorting and transport of secretory and membrane proteins (Helenius. A., and Aebi, M. (2004). Roles of N-linked glycans in the endoplasmic reticulum. Annu. Rev. Biochem. 73, 1019-1049).

Protein glycosylation has a profound influence on the immunogenicity, the stability and the half-life of a protein. In addition, glycosylation can assist the purification of proteins by chromatography, e.g. affinity chromatography with lectin ligands bound to a solid phase interacting with glycosylated moieties of the protein. It is therefore established practice to produce many glycosylated proteins recombinantly in eukaryotic cells to provide biologically and pharmaceutically useful glycosylation patterns.

WO 200307467 (Aebi et al.) demonstrated that the food-borne pathogen Campylobacter jejuni, which is a bacterium, could N-glycosylate its proteins, which was a unique feature among known prokaryotic organisms except for certain species of archaea. The machinery required for glycosylation is encoded by 12 genes that are clustered in the so-called pgl locus. Disruption of N-glycosylation affects invasion and pathogenesis of C. jejuni but is not lethal as in most eukaryotic organisms (Burda P. and M. Aebi, (1999). The dolichol pathway of N-linked glycosylation. Biochem Biophys Acta 1426(2):239-57). It is possible to reconstitute the N-glycosylation of C. jejuni proteins by recombinantly expressing the pgl locus and acceptor glycoprotein in E. coli the same time (Wacker et al. (2002). N-linked glycosylation in Campylobacter jejuni and its functional transfer into E. coli. Science 298, 1790-1793).

N-glycans have a glycan attached to a consensus sequence in a protein. The known N-glycosylation consensus sequence in a protein allows for the N-glycosylation of recombinant target proteins in prokaryotic organisms. Such organisms comprise an oligosaccharyl transferase (“OT”; “OTase”), such as, for example, an oligosaccharyl transferase of C. jejuni, which is an enzyme that transfers the glycan to the consensus sequence of the protein.

WO 200307467 (Aebi et al.) teaches a prokaryotic organism into which is introduced a nucleic acid encoding for (i) specific glycosyltransferases for the assembly of an oligosaccharide on a lipid carrier, (ii) a recombinant target protein comprising a consensus sequence “N-X-S/T”, wherein X can be any amino acid except proline, and (iii) an oligosaccharyl transferase, such as, for example, an oligosaccharyl transferase of C. jejuni that covalently links said oligosaccharide to the consensus sequence of the target protein. Said prokaryotic Organism produces N-glycans with a specific structure which is defined by the type of the specific glycosyltransferases.

WO 2006/119987 (Aebi et al.) describes proteins, as well as means and methods for producing proteins, with efficiency for N-glycosylation in prokaryotic organisms in vivo. It further describes an efficient introduction of N-glycans into recombinant proteins for modifying immunogenicity, stability, biological, prophylactic and/or therapeutic activity of said proteins, and the provision of a host cell that efficiently displays recombinant N-glycosylated proteins of the present invention on its surface. In addition, it describes a recombinant N-glycosylated protein comprising one or more of the following N-glycosylated optimized amino acid sequence(s):

D/E-X-N-Z-S/T (optimized consensus sequence),

wherein X and Z may be any natural amino acid except Pro, and wherein at least one of said N-glycosylated partial amino acid sequence(s) is introduced. The introduction of specific partial amino acid sequence(s) (optimized consensus sequence(s)) into proteins leads to proteins that are efficiently N-glycosylated by an oligosaccharyl transferase in these introduced positions.

The biosynthesis of different polysaccharides is conserved in bacterial cells. The polysaccharides are assembled on carrier lipids from common precursors (activated sugar nucleotides) at the cytoplasmic membrane by different glycosyltransferases with defined specificity. Lipopolysaccharides (“LPS”) are provided in gram-negative bacteria only, e.g. Shigella spp., Pseudomonas spp. and E. coli (ExPEC, EHEC).

The synthesis of LPS starts with the addition of a monosaccharide to the carrier lipid undecaprenyl phosphate (“Und-P-P”) at the cytoplasmic side of the membrane. The antigen is built up by sequential addition of monosaccharides from activated sugar nucleotides by different glycosyltransferases, and the lipid-linked polysaccharide is flipped through the membrane by a flippase. The antigen-repeating unit is polymerized by an enzymatic reaction. The polysaccharide is then transferred to the Lipid A by the Ligase WaaL forming the LPS that is exported to the surface, whereas the capsular polysaccharide is released from the carrier lipid after polymerization and exported to the surface. The biosynthetic pathway of these polysaccharides enables the production of LPS bioconjugates in vivo, capturing the polysaccharides in the periplasm to a protein carrier.

Such synthesized complexes of oligo- or polysaccharides (i.e., sugar residues) and proteins (i.e., protein carriers) can be used as conjugate vaccines to protect against a number of bacterial infections. Conjugate vaccines have been successfully used to protect against bacterial infections. The conjugation of an antigenic polysaccharide to a protein carrier is required for protective memory response, as polysaccharides are T-cell independent immunogens. Polysaccharides have been conjugated to protein carriers by different chemical methods, using activation reactive groups in the polysaccharide as well as the protein carrier.

Conjugate vaccines can be administered to children to protect against bacterial infections and also can provide a long lasting immune response to adults. Constructs of WO 2009/04074 (Fernandez, et al.) have been found to generate an IgG response in animals. It has been found that an IgG response to a Shigella O-specific polysaccharide-protein conjugate vaccine in humans correlates with immune protection in humans. (Passwell, J. H. et al., “Safety and Immunogenicity of Improved Shigella O-Specific Polysaccharide-Protein Conjugate Vaccines in Adults in Israel” Infection and Immunity, 69(3):1351-1357 (March 2001).) It is believed that the polysaccharide (i.e. sugar residues) triggers a short-term immune response that is sugar-specific. Indeed, the human immune system generates a strong response to specific polysaccharide surface structures of bacteria, such as O-antigens and capsular polysaccharides. However, since the immune response to polysaccharides is IgM dependent, the immune system develops no memory. The protein carrier that carries the polysaccharide triggers an IgG response that is T-cell dependent and that provides long lasting protection since the immune system develops memory.

E. coli O157 is an enterohemorrhagic strain responsible for approximately two-thirds of all recent cases of hemolytic-uremic syndrome and poses serious human health concerns (Law, D. (2000) J. App. Microbiol., 88, 729-745; Wang, L., and Reeves, P. R. (1998) Infect. Immun. 66, 3545-3551).

Escherichia coli strain O157 produces an O-antigen containing the repeating tetrasaccharide unit (4-N-acetyl perosamine→fucose→glucose→GalNAc) (α-D-PerNAc-α-L-Fuc-β-D-Glc-α-D-GalNAc) (Perry, M. B., MacLean, L. and Griffith, D. W. (1986) Biochem. Cell. Biol., 64, 21-28). The tetrasaccharide is preassembled on undecaprenyl pyrophosphate. The E. coli cell envelope contains an inner plasma membrane, a stress-hearing peptidoglycan layer and an asymmetric outer membrane consisting of a phospholipid inner monolayer and an outer monolayer composed of bacterial LPS. LPS contains three components, the lipid A anchor, the 3-deoxy-D-manno-oct-2-ulosonic acid-containing core, and the O-antigen region (see: Raetz, C. R. H. and Whitfield, C. (2002) Annu. Rev. Biochem., 71, 635-700; Whitfield, C. (2006) Ann. Rev. Biochem. 75, 39-68; Samuel, G. and Reeves, P. R. (2003) Carbohydrate Research, 338, 2503-2519; and refs, therein for reviews on the assembly of O-antigens of bacterial LPS).

The O-antigen components of bacterial LPS are large, extremely diverse polysaccharides that can be either homopolymeric, composed of a single repeating monosaccharide, or heteropolymeric, containing 10-30 repeats of 3-6 sugar units (Reeves, P. R., Hobbs, M., Valvano, M. A., Skurnik, M., Whitfield, C., Coplin, D., Kido, N., Klena, J., Maskell, D., Raetz, C. R. H., and Rick, P. D. (1996) Trends Microbial., 4, 495-503). O-Antigens are, Thus, the Dominant Feature of the bacterial cell surface and constitute important determinants of virulence and pathogenicity (Law, D. (2000) J. App. Microbiol., 88, 729-745; Spears, K. J., Roe, A. J. and Golly, D. L. (2006) FEMS Microbiol. Lett., 255, 187-202; Liu, B., Knirel, Y. A., Feng, L., Perepelov, A. V., Senchenkova, S. N., Wang, Q., Reeves, P. R. and Wang, L (2008) FEMS Microbiol. Rev. 32, 627-653; Stenutz, R., Weintraub, A. and Widmalm, G. (2006) FEMS Microbiol. Rev. 30, 382-403). E. coli strains with more than 180 individual O-serotypes, attributed to unique O-antigen structures, have been identified (Stenutz, R., Weintraub, A. and Widmalm, G. (2006) FEMS Microbiol. Rev. 30, 382-403).

O-antigen repeat units are pre-assembled on the cytosolic face of the inner membrane attached to undecaprenyl pyrophosphate. The lipid-linked repeat units diffuse transversely (flip-flop) to the periplasmic surface of the inner membrane and are polymerized before transport to the outer membrane and ligation to LPS. Most heteropolymeric O-antigen repeat units have either N-acetylglucosamine (“GlcNAc”) or N-acetylgalactosamine (“GalNAc”) at the reducing terminus.

It had been assumed that the biosynthesis of the lipid intermediates is initiated by the transfer of GlcNAc-9 or GalNAc-P from their respective sugar nucleotide derivatives to undecaprenyl monophosphate (“Und-P”) catalyzed by WecA (Samuel, G. and Reeves, P. R. (2003) Carbohydrate Research, 338, 2503-2519; Alexander, D. C. and Valvano, M. A. (1994) J. Bacteriol., 176, 7079-7084; Zhang, L., Radziejewska-Lebrecht, J., Krajewska-Pietrasik, D., Tolvanen, P. and Skurkik. M. (1997) Mol. Microbiol. 23, 63-76; Amor, P. A. and Whitfield, C. (1997) Mol. Microbiol. 26 (145-161); Wang, L. and Reeves, P. R. (1998) Infect. Immun. 66, 3545-3551). Although the properties and specificity of the GlcNAc-phosphotransferase activity of WecA have been characterized (Rush, J. S., Rick, P. D. and Waechter, C. J. (1997) Glycobiology, 7, 315-322), the conclusion that WecA catalyzes the synthesis of GalNAc-P-P-Und was based on genetic studies (Wang, L. and Reeves, P. R. (1998) Infect. Immun. 66, 3545-3551). Such earlier genetic studies indicated that the biosynthesis of the lipid-linked tetrasaccharide intermediate was initiated by the enzymatic transfer of GalNAc-P from UDP-GalNAc to Und-P catalyzed by WecA (Wang, L. and Reeves, P. R. (1998) Infect. Immun. 66, 3545-3551). However, there was no direct enzymological evidence demonstrating that WecA utilizes UDP-GalNAc as a GalNAc-P donor.

Furthermore, the E. coli O55 gne and gne1 genes were previously proposed to encode a UDP-GlcNAc 4-epimerase (Wang, L., Huskic, S., Cisterne, A., Rothemund, D. and Reeves, P. R. (2002) J. Bacteriol. 184, 2620-2625; Guo, H., Yi, W., Li, L. and Wang, P. G. (2007) Biochem. Biophys. Res. Commun., 356, 604-609). Previous reports identified two genes from E. coli O55 (Wang, L., Huskic, S., Cisterne, A., Rothemund, D. and Reeves, P. R. (2002) J. Bacteriol. 184, 2620-2625) and E. coli O86 (Guo, H., Yi, W., Li, L. and Wang, P. G. (2007) Biochem. Biophys. Res. Commun., 356, 604-609), E. coli O55 gne and E. coli O86 gne1, respectively, that are 100% identical to a Z3206 gene within the same gene family.

Accordingly, one of skill would have been led to believe that the Z3206 gene also encodes a UDP-GlcNAc/UDP-GalNAc epimerase.

BRIEF SUMMARY OF THE INVENTION

It has now been surprisingly discovered that an epimerase encoded by the 3206 gene in E. coli O157 catalyzes a reaction that synthesizes N-acetylgalactosamine (“GalNAc”) undecaprenyl pyrophosphate, which initiates the formation of an oligo- or polysaccharide.

In one aspect, the present invention relates to a recombinant prokaryotic biosynthetic system that produces all or a portion of a polysaccharide comprising an epimerase that synthesizes GalNAc on undecaprenyl pyrophosphate. The invention further includes glycosyltransferases that synthesize all or a portion of a polysaccharide having GalNAc at the reducing terminus, and still further includes glycosyltransferases that synthesize all or a portion of an antigenic polysaccharide having GalNAc at the reducing terminus.

In another aspect, the invention is directed to an epimerase to produce GalNAc on undecaprenyl pyrophosphate, and, in a further aspect, the epimerase is encoded by the Z3206 gene.

In an additional aspect, the present invention is directed to an expression system for producing an N-glycosylated protein comprising: a nucleotide sequence encoding an oligosaccharyl transferase; a nucleotide sequence encoding a protein carrier; at least one oligo- or polysaccharide gene cluster from at least one bacterium, wherein the polysaccharide contains GalNAc at the reducing terminus; and a nucleic acid sequence encoding an epimerase.

In a still further aspect, the instant invention is directed to a recombinant prokaryotic biosynthetic system comprising Z3206 gene which encodes an epimerase that converts GlcNAc-P-P-Und to GalNAc-P-P-Und.

In yet an additional aspect, the present invention is directed to a recombinant prokaryotic biosynthetic system comprising E. coli O55 gne gene or E. coli O86 gne1 gene which encodes an epimerase that converts GlcNAc-P-P-Und to GalNAc-P-P-Und.

In yet another aspect, the present invention relates to an N-glycosylated protein comprising at least one introduced consensus sequence, D/E-X-N-Z-S/T, wherein X and Z can be any natural amino acid except proline, and a glycan having N-acetylgalactosamine at the reducing terminus.

In still another aspect, the present invention is directed to a bioconjugate vaccine comprising an N-glycosylated protein having at least one introduced consensus sequence, D/E-X-N-Z-S/T, wherein X and Z can be any natural amino acid except proline: an immunogenic glycan having N-acetylgalactosamine at the reducing terminus; and an adjuvant.

In an addition aspect, the invention relates to method for producing an N-linked glycosylated protein in a host cell comprising nucleic acids encoding: glycosyltransferases that assemble at least one oligo- or polysaccharide from at least one bacterium containing GalNAc at the reducing terminus; a protein carrier; an oligosaccharyl transferase; and an epimerase.

In a further aspect, the present invention relates to the use of a biosynthetic system and proteins for preparing a bioconjugate vaccine.

In an additional aspect, the present invention is directed to methods for producing mono-, oligo- and polysaccharides, and in a still further aspect the invention directed to methods for producing antigenic glycans and N-glycosylated proteins.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows the time course of [³H]GlcNAc/GalNAc-P-P-Und synthesis by membrane fractions from E. coli O157. The membrane fraction from E. coli strain O157 was incubated with UDP-[³H]GlcNAc for the indicated times at 37° C. The [³H]lipid products were extracted and the incorporation of [³H]GlcNAc into [³H]GlcNAc-P-P-Und (O) and [³H]GalNAc-P-P-Und (•) was assayed as described in Example 2.

FIG. 2 shows the proposed biosynthetic pathway for the formation of GalNAc-P-P-Und from GlcNAc-P-P-Und.

FIGS. 3A, 3B, 3C, and 3D shows purification and characterization of [³H]GalNAc-P-P-Und synthesized by membrane fractions from E. coli strain O157. Membrane fractions from E. coli O157 were incubated with UDP-[³H]GlcNAc, and the [³H]GalNAc lipids were purified as described in Example 3. FIG. 3A, preparative thin layer chromatogram of [³H]HexNAc lipids on borate-impregnated silica gel G (Quantum 1) after purification on DEAE-cellulose is shown. FIG. 3B, thin layer chromatography of purified [³H]GalNAc-P-P-Und on borate-impregnated silica gel G (Baker, Si250) after recovery from the preparative plate in panel A is shown. FIG. 3C. descending paper chromatogram (borate-impregnated Whatman No. 1 paper) of the [³H]-amino sugar recovered after mild acid hydrolysis of [³H]GalNAc-P-P-Und purified in FIG. 3B is shown. FIG. 3D, descending paper chromatogram (Whatman No. 3MM) of the [³H]HexNAc-alditol produced by reduction of the [³H] amino sugar from FIG. 3C with NaBH₄.

FIGS. 4A and 4B shows metabolic labeling of E. coli 21546 cells and E. coli 21546 cells after transformation with pMLBAD:Z3206. E. coli 21546 (FIG. 4A) and E. coli 21546:pMLBAD/Z3206 (FIG. 4B) were labeled metabolically with [³H]GlcNAc for 5 min at 37° C. [³H]GlcNAc/GalNAc-P-P-Und were extracted, freed of water soluble contaminants and separated by thin layer chromatography on borate-impregnated silica gel plates (Baker Si250) as described in Example 3. Radioactive lipids were detected using a Bioscan chromatoscanner. The chromatographic positions of GalNAc-P-P-Und and GlcNAc-P-P-Und are indicated by arrows.

FIGS. 5A, 5B, 5C, and 5D shows thin layer chromatography of [³H]GlcNAc/GalNAc-P-P-Und formed by incubation of membrane fractions from E. coli strains with UDP-[³H]GlcNAc. Membrane fractions from E. coli strains K12 (FIG. 5A), O157 (FIG. 5B), 21546 (FIG. 5C), and 21546:pMLBAD/Z3206 (FIG. 5D) were incubated with UDP-[³H]GlcNAc for 10 min at 37° C., and the [³H]lipid products were extracted, freed of water-soluble contaminants by partitioning, and separated by thin layer chromatography on borate-impregnated silica gel plates (Baker Si250) as described in Example 3. The chromatographic positions of GalNAc-P-P-Und and GlcNAc-P-P-Und are indicated by arrows.

FIGS. 6A, 6B, and 6C shows discharge of GlcNAc-P by incubation with UMP. Membrane fractions from E. coli 21546:Z3206 were preincubated with UDP-[³H]GlcNAc to enzymatically label GlcNAc-P-P-Und for 10 min (FIG. 6A) at 37° C. followed by a second incubation period with 1 mM UMP included for either 1 min (FIG. 6B) or 2 min (FIG. 6C). After the indicated incubation periods [³H]GlcNAc/GalNAc-P-P-Und were extracted and resolved by thin layer chromatography on borate-impregnated silica gel plates (Baker Si250) as described in Example 3. The chromatographic positions of GalNAc-P-P-Und and GlcNAc-P-P-Und are indicated by arrows.

FIGS. 7A, 7B, 7C, 7D, 7E, and 7F shows conversion of exogenous [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und to the pertinent [³H]HexNAc-P-P-Und product catalyzed by membranes from strain 21546 expressing Z3206. Membrane fractions from E. coli strain 21546 (FIG. 7B and FIG. 7E) and 215461:pMLBAD/Z3206 (FIG. 7C and FIG. 7F) were incubated with purified [³H]GlcNAc-P-P-Und (FIG. 7A, FIG. 7B, and FIG. 7C) or [³H]GalNAc-P-P-Und (panels at FIG. 7D, FIG. 7E, and FIG. 7F) (dispersed ultrasonically in 1% Triton X-100) for 1 min at 37° C. [³H]GlcNAc/GalNAc-P-P-Und were extracted, resolved by thin layer chromatography on borate-impregnated silica gel plates (Baker Si250) and detected with a Bioscan AR2000 radiochromatoscanner as described in Example 3.

FIG. 8 shows SDS-PAGE analysis of unglycosylated and glycosylated AcrA protein. Periplasmic extracts prepared from E. coli DH5α cells carrying the AcrA expression plasmid and the pgl operon Agile complemented with pMLBAD:Z3206 (lane 1), pMLBAD:gne (lane 2) or the vector control pMLBAD (lane 3) were separated by 10% SDS-PAGE and transferred to nitrocellulose membranes. AcrA and its glycosylated forms were detected with anti AcrA antisera. The position of bands corresponding to unglycosylated (AcrA) and glycosylated AcrA (gAcrA) is indicated.

FIG. 9 shows the genes that have been identified by Liu B et al. (Structure and genetics of Shigella O antigens FEMS Microbiology Review, 2008. 32: p. 27).

FIG. 10 is a scheme showing the DNA region containing the genes required to synthesize the S. flexneri 6 O antigen.

FIG. 11 shows expression of the S. flexneri 6 O antigen in E. coli. LPS was visualized by either silver staining or by transfer to nitrocellulose membranes and detection by antibodies directed against S. flexneri 6.

FIG. 12 shows HPLC of O antigen. LLO analysis of E. coli cells (SCM3) containing S. flexneri—Z3206, E. coli cells (SCM3) containing S. flexneri+Z3206 or empty E. coli (SCM3) cells.

FIG. 13 shows Western blot of Nickel purified proteins from E. coli cells expressing EPA, pglB and S. flexneri 6 O-antigen+/−Z3206.

DETAILED DESCRIPTION OF THE INVENTION

The present invention encompasses a recombinant prokaryotic biosynthetic system comprising nucleic acids encoding an epimerase that synthesizes an oligo- or polysaccharide having N-acetylgalactosamine at the reducing terminus, and N-glycosylated proteins having N-acetylgalactosamine at the reducing terminus of the glycan.

The term “partial amino acid sequence(s)” is also referred to as “optimized consensus sequence(s)” or “consensus sequence(s).” The optimized consensus sequence is N-glycosylated by an oligosaccharyl transferase (“OST,” “OTase”), much more efficiently than the regular consensus sequence “N-X-ST.”

In general, the term “recombinant N-glycosylated protein” refers to any poly- or oligopeptide produced in a host cell that does not naturally comprise the nucleic acid encoding said protein. In the context of the present invention, this term refers to a protein produced recombinantly in a prokaryotic host cell, for example, Escherichia spp., Campylobacter spp., Salmonella spp., Shigella spp., Helicobacter spp., Pseudomonas spp., Bacillus spp., and in further embodiments Escherichia cell, Campylobacter jejuni, Salmonella typhimurium etc., wherein the nucleic acid encoding said protein has been introduced into said host cell and wherein the encoded protein is N-glycosylated by the OTase, said transferase enzyme naturally occurring in or being introduced recombinantly into said host cell.

In accordance with the internationally accepted one letter code for amino acids the abbreviations D, E, N, S and T denote aspartic acid, glutamic acid, asparagine, serine, and threonine, respectively.

Proteins according to the invention comprise one or more of an optimized consensus sequence(s) D/E-X-N-Z-S/T that is/are introduced into the protein and N-glycosylated. Hence, the proteins of the present invention differ from the naturally occurring C. jejuni N-glycoproteins which also contain the optimized consensus sequence but do not comprise any additional (introduced) optimized consensus sequences.

The introduction of the optimized consensus sequence can be accomplished by the addition, deletion and/or substitution of one or more amino acids. The addition, deletion and/or substitution of one or more amino acids for the purpose of introducing the optimized consensus sequence can be accomplished by chemical synthetic Strategies, which, in view of the instant invention, would be well known to those skilled in the art such as solid phase-assisted chemical peptide synthesis. Alternatively, and preferred for larger polypeptides, the proteins of the present invention can be prepared by recombinant techniques that would be art-standard techniques in light of the invention.

The proteins of the present invention have the advantage that they may be produced with high efficiency and in any host. In one embodiment of the invention, the host comprises a functional pgl operon from Campylobacter spp., for example, from C. jejuni. In further embodiments, oligosaccharyl transferases from Campylobacter spp. for practicing the invention are from Campylobacter coli or Campylobacter lari. In view of the invention, oligosaccharyl transferases would be apparent to one of skill in the art. For example, oligosaccharyl transferases are disclosed in references such as Szymanski, C. M. and Wren, B. W. (2005) Protein glycosylation in bacterial mucosal pathogens, Nat. Rev. Microbiol. 3:225-237. The functional pgl operon may be present naturally when said prokaryotic host is Campylobacter spp., or, for example, C. jejuni. However, as demonstrated before in the art and mentioned above, the pgl operon can be transferred into cells and remain functional in said new cellular environment.

The term “functional pgl operon from Campylobacter spp., preferably C. jejuni” is meant to refer to the cluster of nucleic acids encoding the functional oligosaccharyl transferase (OTase) of Campylobacter spp., for example, C. jejuni, and one or more specific glycosyltransferases capable of assembling an oligosaccharide on a lipid carrier, and wherein said oligosaccharide can be transferred from the lipid carrier to the target protein having one or more optimized amino acid sequence(s): D/E-X-N-Z-S/T by the OTase. It to be understood that the term “functional pgl operon from Campylobacter spp., preferably C. jejuni” in the context of this invention does not necessarily refer to an operon as a singular transcriptional unit. The term merely requires the presence of the functional components for N-glycosylation of the recombinant protein in one host cell. These components may be transcribed as one or more separate mRNAs and may be regulated together or separately. For example, the term also encompasses functional components positioned in genomic DNA and plasmid(s) in one host cell. For the purpose of efficiency, in one embodiment all components of the functional pgl operon are regulated and expressed simultaneously.

The oligosaccharyl transferase can originate, in some embodiments, from Campylobacter spp., and in other embodiments, from C. jejuni. In additional embodiments, the oligosaccharyl transferase can originate from other organisms which are known to those of skill in the art as having an oligosaccharyl transferase, such as, for example, Wolinella spp. and eukaryotic organisms.

The one or more specific glycosyltransferases capable of assembling an oligosaccharide on a lipid carrier may originate from the host cell or be introduced recombinantly into said host cell, the only functional limitation being that the oligosaccharide assembled by said glycosyltransferases can be transferred from the lipid carrier to the target protein having one or more optimized consensus sequences by the OTase. Hence, the selection of the host cell comprising specific glycosyltransferases naturally and/or replacing specific glycosyltransferases naturally present in said host as well as the introduction of heterologous specific glycosyltransferases will enable those skilled in the art to vary the N-glycans bound to the optimized N-glycosylation consensus site in the proteins of the present invention.

As a result of the above, the present invention provides for the individual design of N-glycan-patterns on the proteins of the present invention. The proteins can therefore be individualized in their N-glycan pattern to suit biological, pharmaceutical and purification needs.

In embodiments of the present invention, the proteins may comprise one but also more than one, such as at least two, at least 3 or at least 5 of said N-glycosylated optimized amino acid sequences.

The presence of one or more N-glycosylated optimized amino acid sequence(s) in the proteins of the present invention can be of advantage for increasing their immunogenicity, increasing their stability, affecting their biological activity, prolonging their biological half-life and/or simplifying their purification.

The optimized consensus sequence may include any amino acid except proline in position(s) X and Z. The term “any amino acids” is meant to encompass common and rare natural amino acids as well as synthetic amino acid derivatives and analogs that will still allow the optimized consensus sequence to be N-glycosylated by the OTase. Naturally occurring common and rare amino acids are preferred for X and Z. X and Z may be the same or different.

It is noted that X and Z may differ for each optimized consensus sequence in a protein according to the present invention.

The N-glycan hound to the optimized consensus sequence will be determined by the specific glycosyltransferases and their interaction when assembling the oligosaccharide on a lipid carrier for transfer by the OTase. In view of the instant invention, those skilled in the art would be able to design the N-glycan by varying the type(s) and amount of the specific glycosyltransferases present in the desired host cell.

“Monosaccharide” as used herein refers to one sugar residue. “Oligo- and polysaccharide” refer to two or more sugar residues. The term “glycans” as used herein refers to mono-, oligo- or polysaccharides. “N-glycans” are defined herein as mono-, oligo- or polysaccharides of variable compositions that are linked to an ε-amide nitrogen of an asparagine residue in a protein via an N-glycosidic linkage. In an embodiment, the N-glycans transferred by the OTase are assembled on an undecaprenol pyrophosphate (“Und-P-P”) lipid-anchor that is present in the cytoplasmic membrane of gram-negative or positive bacteria. They are involved in the synthesis of O antigen, O polysaccharide and peptidoglycan (Bugg, T. D., and Brandish, P. E. (1994). From peptidoglycan to glycoproteins: common features of lipid-linked oligosaccharide biosynthesis. FEMS Microbiol Lett 119, 255-262; Valvano, M. A. (2003). Export of O-specific lipopolysaccharide. Front Biosci 8, s452-471).

Studies were conducted to determine whether the biosynthesis of a lipid-linked repeating tetrasaccharide (4-N-acetyl perosamine→fucose→glucose→GalNAc) was initiated by the formation of GalNAc-P-P-Und by WecA. When membrane fractions from E. coli strains K12, 0157, and PR4019, a WecA-overexpressing strain, were incubated with UDP-[³H]GalNAc, neither the enzymatic synthesis of [³H]GlcNAc-P-P-Und nor [³H]GalNAc-P-P-Und was detected. However, when membrane fractions from strain O157 were incubated with UDP-[³H]GlcNAc, two enzymatically labeled products were observed with the chemical and chromatographic properties of [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und, confirming that strain O157 contained an epimerase capable of interconverting GlcNAc-P-P-Und and GalNAc-P-P-Und. The presence of an epimerase was also confirmed by showing that exogenous [³H]GlcNAc-P-P-Und was converted to [³H]GalNAc-P-P-Und when incubated with membranes from strain O157. When strain O157 was metabolically labeled with [³H]GlcNAc, both [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und were detected. Transformation of E. coli strain 21546 with the Z3206 gene enabled these cells to synthesize GalNAc-P-P-Und in vivo and in vitro. The reversibility of the epimerase reaction was demonstrated by showing that [³H]GlcNAc-P-P-Und was reformed when membranes from strain O157 were incubated with exogenous [³H]GalNAc-P-P-Und. The inability of Z3206 to complement the loss of the gne gene in the expression of the Campylobacter jejuni N-glycosylation system in E. coli indicated that it does not function as a UDP-GlcNAc/UDP-GalNAc epimerase. Based on these results, it was confirmed that GalNAc-P-P-Und is synthesized reversibly by a GlcNAc-P-P-Und epimerase following the formation of GlcNAc-P-P-Und by WecA in E. coli O157.

The initiating reaction of E. coli O157 O-antigen subunit assembly was investigated to confirm that GalNAc-P-P-Und synthesis is catalyzed by some previously unknown mechanism rather than by WecA. The evidence presented herein shows that GalNAc-P-P-Und is not synthesized by GalNAc-P transfer from UDP-GalNAc catalyzed by WecA but rather by the reversible epimerization of the 4-OH of GlcNAc-P-P-Und catalyzed by an epimerase encoded by the Z3206 gene in E. coli O157.

Accordingly, the invention encompasses a novel biosynthetic pathway for the assembly of an important bacterial cell surface component as well as a new biosynthetic route for the synthesis of GalNAc-P-P-Und. A further embodiment of the invention includes the bacterial epimerase as a new target for antimicrobial agents.

E. coli O157 synthesizes an O-antigen with the repeating tetrasaccharide structure (4-N-acetyl perosamine→fucose→glucose→GalNAc). It is shown herein that the biosynthesis of the lipid-linked tetrasaccharide intermediate was not initiated by the enzymatic transfer of GalNAc-P from UDP-GalNAc to Und-P catalyzed by WecA, contrary to earlier genetic studies (Wang. L. and Reeves, P. R. (1998) Infect. Immun. 66, 3545-3551). The invention described herein, obtained by homology searches and then confirmed by results from genetic, enzymology, and metabolic labeling experiments, demonstrates that WecA does not utilize UDP-GalNAc as a substrate, but that WecA is required to synthesize GlcNAc-P-P-Und which is then reversibly converted to GalNAc-P-P-Und by an epimerase encoded by the Z3206 gene in strain O157.

The Z3206 gene of the present invention belongs to a family of genes present in several strains that produce surface O-antigen repeat units containing GalNAc residues at their reducing termini (Table 1). The Z3206 gene sequence is shown in SEQ ID NO: 1. Previous reports identified two genes from E. coli O55 (Wang, L., Huskic, S., Cisterne, A., Rothemund, D. and Reeves, P. R. (2002) J. Bacteriol. 184, 2620-2625) and E. coli O86 (Gun, H., Yi, W., Li, L. and Wang, P. G. (2007) Biochem. Biophys. Res. Comm., 356, 604-609), E. coli O55 gne and E. coli O86 gne1, respectively, that are 100% identical to a Z3206 gene (Table 1). The E. coli O55 gne gene sequence is shown as SEQ ID NO: 3, and E. coli O86 gne1 gene sequence is shown as SEQ ID NO: 5.

TABLE 1

Correlation of Z3206 gene in bacterial strains expressing O-antigen
chains with GalNAc at the reducing termini.

		GalNAc
	% Identity	at the reducing
	with	terminus of O-antigen
	Z3206	repeat unit

E. coli O55 gne (SEQ ID NO: 3)	100	Yes
E. coli O86 gnel (SEQ ID NO: 5)	100	Yes
Shigella boydii O18 gne (SEQ ID	88	Yes
NO: 7)
Salmonella enterica O30 gne	94	Yes
(SEQ ID NO: 9)
C. jejuni gne (SEQ ID NO: 11)	21	No
E. coli K12 galE (SEQ ID NO: 13)	27	No
E. coli O86 gne2 (SEQ ID NO: 15)	18	Yes

Accordingly, we conclude that E. coli O55 gne and E. coli O86 gne1 also encode epimerases capable of converting GlcNAc-P-P-Und to GalNAc-P-P-Und in strains O55 and O86, respectively, which also produce O-antigen repeat units with GalNAc at the reducing termini (Table 1).

Two experimental approaches in this study indicate that the Z3206 protein does not catalyze the epimerization of UDP-GlcNAc to UDP-GalNAc in strain O157. First, when membranes from strain O157 were incubated with [³H]UDP-GalNAc, neither [³H]GlcNAc-P-P-Und nor [³H]GalNAc-P-P-Und was detected (Table 3). If Z3206 catalyzed the conversion of [³H]UDP-GalNAc to [³H]UDP-GlcNAc, it would be expected that [³H]GlcNAc-P-P-Und should be observed. Second, we have shown that hemagglutinin-tagged Z3206 was incapable of complementing the UDP-GalNAc-dependent C. jejuni N-glycosylation reporter system (FIG. 8).

E. coli O55 gne gene from strain O55 (Wang, L., Huskic, S., Cisterne, A., Rothemund, D. and Reeves, P. R. (2002) J. Bacteriol. 184, 2620-2625) was also assayed for epimerase activity by incubating crude extracts with UDP-GalNAc and indirectly assaying the conversion to UDP-GlcNAc by measuring an increase in reactivity with p-dimethylaminobenzaldehyde after acid hydrolysis. In both studies, the formation of the product was based on changes in reactivity with p-dimethylaminobenzaldehyde, and not a definitive characterization of the sugar nucleotide end product. A 90% pure polyhistidine-tagged E. coli O86 gne1 was also shown to have a low level of UDP-glucose epimerase activity relative to Gne2 in a coupled assay.

Accordingly, an embodiment of the invention is directed to a recombinant prokaryotic biosynthetic system containing Z3206 gene, E. coli O55 gne gene or E. coli O86 gne1 gene that converts GlcNAc-P-P-Und to GalNAc-P-P-Und.

It is significant that E. coli O86, which synthesizes an O-antigen containing two GalNAc residues, which would presumably require UDP-GalNAc as the glycosyl donor for the additional, non-reducing terminal GalNAc, also possesses an additional GlcNAc 4-epimerase gene, termed gne2, within the O-antigen gene cluster (Guo. B, Yi, W., Li, L. and Wang, P. G. (2007) Biochem. Biophys. Res. Commun., 356, 604-609). This additional epimerase gene has high homology with the galE gene of the colanic acid gene cluster and appears to be a UDP-GlcNAc 4-epimerase capable of synthesizing UDP-GalNAc.

The Z3206 gene appears to be highly conserved in E. coli O-serotypes initiated with GalNAc. In a recent study, 62 E. coli strains, with established O-antigen repeat unit structures, were screened for expression of Z3206 by a polymerase chain reaction based method using nucleotide primers designed to specifically detect the E. coli O157 Z3206 gene (Wang, L., Huskic, Cisterne, A., Rothemund, D. and Reeves, P. R. (2002) J. Bacteriol. 184, 2620-2625). In this study Z3206 was detected in 16 of the 22 E. coli strains that were known to contain GalNAc, and in only 4 of the 40 strains lacking GalNAc. Moreover, a similar screen of the 22 GalNAc-containing strains with primers designed to detect an alternative epimerase with UDP-GlcNAc 4-epimerase activity (the GalE gene of E. coli O113) detected no strains carrying this gene, indicating that Z3206 is the GlcNAc 4-epimerase gene most commonly associated with the presence of a reducing-terminal GalNAc in O-antigen repeat units of E. coli.

Analysis of the Z3206 protein sequence by a variety of web-based topological prediction algorithms indicates that the Z3206 protein is not highly hydrophobic. The majority of the topological prediction algorithms indicate that Z3206 is a soluble 37 kDa protein, although TMPred (Hofmann, K., and Stoffel, W. (1993) Biol. Chem. Hoppe-Seyler 374, 166 (abstr.)) predicted a single weak N-terminal transmembrane helix. However, Western blotting after SDS-PAGE of cellular fractions from E. coli cells expressing hemagglutinin-tagged Z3206 clearly shows that the tagged protein is associated with the particulate fraction following hypotonic lysis of the cells. Preliminary experiments show that the protein remains associated with the particulate fraction following incubation of the membrane fraction with 1 M KCl, but is solubilized in an active form by incubation with 0.1% Triton X-100.

E. coli O157 Z3206 has significant sequence homology with the short-chain dehydrogenase/reductase family of oxido-reductases including the GXXGXXG motif (Rossman fold), consistent with the NAD(P) binding pocket (Allard, S. T. M., Giraud, M. F., and Naismith, J. H. (2001) Cell. Mol. Life Sci. 58, 1650-1655) and the conserved SX₂₄YX₃K sequence, involved in proton abstraction and donation (Field, R. A. and Naismith, J. H. (2003) Biochemistry 42, 7637-7647). Molecular modeling based on crystal structures of UDP-Glc 4-epimerase, another member of the short-chain dehydrogenase/reductase family, suggests that, after hydride abstraction, the 4-keto intermediate rotates around the β phosphate of UDP to present the opposite face of the keto intermediate and allow re-insertion of hydride from the opposite side, thus inverting the configuration of the hydroxyl at carbon 4. The presence of these conserved sequences suggests that Z3206 likely functions via a similar mechanism. Although the equilibrium distribution of the epimerase products, seen in FIG. 7, seems to favor the formation of GlcNAc-P-P-Und, the utilization of GalNAc-P-P-Und for O-antigen repeat unit assembly would drive the epimerization reaction in the direction of GalNAc-P-P-Und by mass action.

Epimerization of the glycosyl moieties of polyisoprenoid lipid intermediates has not been widely reported in nature. In one previous study the 2-epimerization of ribosyl-P-decaprenol to form arabinosyl-P-decaprenol, an arabinosyl donor in arabinogalactan biosynthesis in mycobacteria, was reported (Mikusová, K., Huang, H., Yagi, T., Holsters, M., Vereecke, D., D'Haeze, W., Scherman, M. S., Brennan, P. J., McNeil, M. R., and Crick, D. C. (2005) J. Bacterial. 187, 8020-8025). Arabinosyl-P-decaprenol is formed via a two-step oxidation/reduction reaction requiring two mycobacterial proteins, Rv3790 and Rv3791. Although epimerization was modestly stimulated by the addition of NAD and NADP, neither Rv3790 nor Rv3791 contain either the Rossman fold or the SX₂₄YXXXK motif, characteristic of the short-chain dehydrogenase/reductase family (Allard, S. T. M., Giraud, M.-F. and Naismith, J. H. (2001) Cell. Mal. Life Sci. 58, 1650-1655; Field, R. A. and Naismith, J. H. (2003) Biochemistry 42, 7637-7647).

In summary, a novel biosynthetic pathway for the formation of GalNAc-P-P-Und by the epimerization of GlcNAc-P-P-Und, is described.

Several antibiotics have been shown to inhibit the synthesis of GlcNAc-P-P-Und, but are limited in their utility because they also block the synthesis of GlcNAc-P-P-dolichol, the initiating dolichol-linked intermediate of the protein N-glycosylation pathway. Although GlcNAc-P-P-dolichol is a structurally related mammalian counterpart of the bacterial glycolipid intermediate, GlcNAc-P-P-Und, there is no evidence for a similar epimerization reaction converting GlcNAc-P-P-dolichol to GalNAc-P-P-dolichol in eukaryotic cells. Thus, this raises the possibility that in strains where the surface O-antigen containing GalNAc at the reducing termini are involved in a pathological process, O-antigen synthesis could potentially be blocked by inhibiting the bacterial epimerases.

An embodiment of the present invention involves an epimerase that converts GlcNAc-P-P-Und (N-acetylglucosaminylpyrophosphorylundecaprenol) to GalNAc-P-P-Und (N-acetylgalactosaminylpyrophosphorylundecaprenol) in E. coli O157. A still further exemplary aspect of the invention involves the initiation of synthesis of lipid-bound repeating tetrasaccharide having GalNAc at the reducing terminus.

The basis of another aspect of the invention includes the discovery that Campylobacter jejuni contains a general N-linked protein glycosylation system. Various proteins of C. jejuni have been shown to be modified by a heptasaccharide. This heptasaccharide is assembled on undecaprenyl pyrophosphate, the carrier lipid, at the cytoplasmic side of the inner membrane by the stepwise addition of nucleotide activated monosaccharides catalyzed by specific glycosyltransferases. The lipid-linked oligosaccharide then flip-flops (diffuses transversely) into the periplasmic space by a flippase, e.g., PglK. In the final step of N-linked protein glycosylation, the oligosaccharyltransferase (e.g., PglB) catalyzes the transfer of the oligosaccharide from the carrier lipid to asparagine (Asn) residues within the consensus sequence D/E-X-N-Z-S/T, where the X and Z can be any amino acid except Pro. The glycosylation cluster for the heptasaccharide had been successfully transferred into E. coli and N-linked glycoproteins of Campylobacter had been produced.

It had been demonstrated that PglB does not have a strict specificity for the lipid-linked sugar substrate. The antigenic polysaccharides assembled on undecaprenyl pyrophosphate are captured by PglB in the periplasm and transferred to a protein carrier (Feldman, 2005; Wacker, M., et al., Substrate specificity of bacterial oligosaccharyltransferase suggests a common transfer mechanism for the bacterial and eukaryotic systems. Proc Natl. Acad Sci USA. 2006. 103(18): p. 7088-93.) The enzyme will also transfer a diverse array of undecaprenyl pyrophosphate (UPP) linked oligosaccharides if they contain an N-acetylated hexosamine at the reducing terminus. The nucleotide sequence for pglB and the amino acid sequence for pglB are published at WO2009/04074.

Accordingly, one embodiment of the invention involves a recombinant N-glycosylated protein comprising: one or more of an introduced consensus sequence. D/E-X-N-Z-S/T, wherein X and Z can be any natural amino acid except proline; and an oligo- or polysaccharide having N-acetylgalactosamine at the reducing terminus and N-linked to each of said one or more introduced consensus sequences by an N-glycosidic linkage.

In a further embodiment, the present invention is directed to a recombinant prokaryotic biosynthetic system for producing all or a portion of a polysaccharide comprising an epimerase that synthesizes N-acetylgalactosamine (“GalNAc”) on undecaprenyl pyrophosphate. In a further embodiment, all or a portion of the polysaccharide is antigenic.

In another embodiment, the present invention is directed to a recombinant prokaryotic biosynthetic system comprising: an epimerase that synthesizes GalNAc on undecaprenyl pyrophosphate; and glycosyltransferases that synthesize a polysaccharide having GalNAc at the reducing terminus.

An embodiment of the invention further comprises a recombinant prokaryotic biosynthetic system comprising an epimerase that synthesizes GalNAc on undecaprenyl pyrophosphate and glycosyltransferases that synthesize a polysaccharide, wherein said polysaccharide has the following structure: α-D-PerNAc-α-L-Fuc-β-D-Glc-α-D-GalNAc; and wherein GalNAc is at the reducing terminus of said polysaccharide.

The recombinant prokaryotic biosynthetic system can produce mono-, oligo- or polysaccharides of various origins. Embodiments of the invention are directed to oligo- and polysaccharides of various origins. Such oligo- and polysaccharides can be of prokaryotic or eukaryotic origin. Oligo- or polysaccharides of prokaryotic origin may be from gram-negative or gram-positive bacteria. In one embodiment of the invention, the oligo- or polysaccharide is from E. coli. In a further aspect of the invention, said oligo- or polysaccharide is from E. coli O157. In another embodiment, said oligo- or polysaccharide comprises the following structure: α-D-PerNAc-α-L-Fuc-P-D-Glc-α-D-GalNAc. In a further embodiment of the invention, the oligo- or polysaccharide is from Shigella flexneri. In a still further embodiment, the oligo- or polysaccharide is from Shigella flexneri 6. In a still further aspect, said oligo- or polysaccharide comprises the following structure:

Embodiments of the invention further include proteins of various origins. Such proteins include proteins native to prokaryotic and eukaryotic organisms. The protein carrier can be, for example, AcrA or a protein carrier that has been modified to contain the consensus sequence for protein glycosylation, i.e., D/E-X-N-Z-S/T, wherein X and Z can be any amino acid except proline (e.g., a modified Exotoxin Pseudomonas aeruginosa (“EPA”)). In one embodiment of the invention, the protein is Pseudomonas aeruginosa EPA.

A further aspect of the invention involves novel bioconjugate vaccines having GalNAc at the reducing terminus of the N-glycan. An additional embodiment of the invention involves a novel approach for producing such bioconjugate vaccines that uses recombinant bacterial cells that contain an epimerase which produces GalNAc on undecaprenyl pyrophosphate. In one embodiment, bioconjugate vaccines can be used to treat or prevent bacterial diseases. In further embodiments, bioconjugate vaccines may have therapeutic and/or prophylactic potential for cancer or other diseases.

A typical vaccination dosage for humans is about 1 to 25 μg, preferably about 1 μg to about 10 μg, most preferably about 10 μg. Optionally, a vaccine, such as a bioconjugate vaccine of the present invention, includes an adjuvant.

In an additional embodiment, the present invention is directed to an expression system for producing a bioconjugate vaccine against at least one bacterium comprising: a nucleotide sequence encoding an oligosaccharyl transferase; a nucleotide sequence encoding a protein carrier; at least one polysaccharide gene cluster from the at least one bacterium, wherein the polysaccharide contains GalNAc at the reducing terminus; and a nucleic acid sequence encoding an epimerase. In a further embodiment, the polysaccharide gene cluster encodes an antigenic polysaccharide.

In still a further embodiment, the present invention is directed to an expression system for producing a bioconjugate vaccine against at least one bacterium comprising: a nucleotide sequence encoding an oligosaccharyl transferase; a nucleotide sequence encoding a protein carrier comprising at least one inserted consensus sequence, D/E-X-N-Z-S/T, wherein X and Z may be any natural amino acid except proline; at least one polysaccharide gene cluster from the at least one bacterium, wherein the polysaccharide contains GalNAc at the reducing terminus; and the Z3206 gene. In a further embodiment, the polysaccharide gene cluster encodes an antigenic polysaccharide.

In yet another embodiment, the present invention is directed to a bioconjugate vaccine comprising: a protein carrier; at least one immunogenic polysaccharide chain linked to the protein carrier, wherein said polysaccharide has GalNAc at the reducing terminus, and further wherein said GalNAc is directly linked to the protein carrier; and an adjuvant.

In yet an additional embodiment, the present invention is directed to a bioconjugate vaccine comprising: a protein carrier comprising at least one inserted consensus sequence, D/E-X-N-Z-S/T, wherein X and Z may be any natural amino acid except proline; least one immunogenic polysaccharide from at least one bacterium, linked to the protein carrier, wherein the at least one immunogenic polysaccharide contains GalNAc at the reducing terminus directly linked to the protein carrier; and, optionally, an adjuvant.

Another embodiment of the invention is directed to a method of producing a bioconjugate vaccine, said method comprising: assembling a polysaccharide having GalNAc at the reducing terminus in a recombinant organism through the use of glycosyltransferases; linking said GalNAc to an asparagine residue of one or more target proteins in said recombinant organism, wherein said one or more target proteins contain one or more T-cell epitopes.

In a further embodiment, the present invention is directed to a method of producing a bioconjugate vaccine, said method comprising: introducing genetic information encoding for a metabolic apparatus that carries out N-glycosylation of a target protein into a prokaryotic organism to produce a modified prokaryotic organism; wherein the genetic information required for the expression of one or more recombinant target proteins is introduced into said prokaryotic organism; wherein the genetic information required for the expression of E. coli strain O157 epimerase is introduced into said prokaryotic organism; and wherein the metabolic apparatus comprises glycosyltransferases of a type that assembles a polysaccharide having GalNAc at the reducing terminus on a lipid carrier, and an oligosaccharyltransferase, the oligosaccharyltransferase covalently linking GalNAc of the polysaccharide to an asparagine residue of the target protein, and the target protein containing at least one T-cell epitope; producing a culture of the modified prokaryotic organism; and obtaining glycosylated proteins from the culture medium.

A further aspect of the present invention relates to a pharmaceutical composition. An additional aspect of the invention involves a pharmaceutical composition comprising at least one N-glycosylated protein according to the invention. In light of the disclosure herein, the preparation of medicaments comprising proteins would be well known in the art. A still further aspect of the invention relates to a pharmaceutical composition comprising an antibiotic that inhibits an epimerase that converts GlcNAc-P-P-Und to GalNAc-P-P-Und. In a preferred embodiment, the pharmaceutical composition of the invention comprises a pharmaceutically acceptable excipient, diluent and/or adjuvant.

Suitable excipients, diluents and/or adjuvants are well-known in the art. An excipient or diluent may be a solid, semi-solid or liquid material which may serve as a vehicle or medium for the active ingredient. One of ordinary skill in the art in the field of preparing compositions can readily select the proper form and mode of administration depending upon the particular characteristics of the product selected, the disease or condition to be treated, the stage of the disease or condition, and other relevant circumstances (Remington's Pharmaceutical Sciences, Mack Publishing Co. (1990)). The proportion and nature of the pharmaceutically acceptable diluent or excipient are determined by the solubility and chemical properties of the pharmaceutically active compound selected, the chosen route of administration, and standard pharmaceutical practice. The pharmaceutical preparation may be adapted for oral, parenteral or topical use and may be administered to the patient in the form of tablets, capsules, suppositories, solution, suspensions, or the like. The pharmaceutically active compounds of the present invention, while effective themselves, can be formulated and administered in the form of their pharmaceutically acceptable salts, such as acid addition salts or base addition salts, for purposes of stability, convenience of crystallization, increased solubility, and the like.

In instances where specific nucleotide or amino acid sequences are noted, it will be understood that the present invention encompasses homologous sequences that still embody the same functionality as the noted sequences. In an embodiment of the invention, such sequences are at least 85% homologous. In another embodiment, such sequences are at least 90% homologous. In still further embodiments, such sequences are at least 95% homologous.

The determination of percent identity between two nucleotide or amino acid sequences is known to one of skill in the art.

Nucleic acid sequences described herein, such as those described in the sequence listing below, are examples only, and it will be apparent to one of skill in the art that the sequences can be combined in different ways. Additional embodiments of the invention include variants of nucleic acids. A variant of a nucleic acid (e.g., a codon-optimized nucleic acid) can be substantially identical, that is, at least 80% identical, for example, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 99.5% identical, to SEQ ID NO: 1, SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 11, SEQ ID NO: 13, SEQ ID NO: 15, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 27, SEQ ID NO: 28 or SEQ ID NO: 29. Nucleic acid variants of a sequence that contains SEQ ID NO: 1, SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 11, SEQ ID NO: 13, SEQ ID NO: 15, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 27, SEQ ID NO: 28 or SEQ ID NO: 29 include nucleic acids with a substitution, variation, modification, replacement, deletion, and/or addition of one or more nucleotides (for example, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 125, 150, 175 or 200 nucleotides) from a sequence that contains SEQ ID NO: 1, SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 11, SEQ ID NO: 13, SEQ ID NO: 15, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24, SEQ ID NO: 27, SEQ ID NO: 28 or SEQ ID NO: 29, or parts thereof.

For example, in an embodiment of the instant invention, such variants include nucleic acids that encode an epimerase which converts GlcNAc-P-P-Und to GalNAc-P-P-Und and that i) are expressed in a host cell, such as, for example, E. coli and ii) are substantially identical to SEQ ID NO: 1, SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7 or SEQ ID NO: 9, or parts thereof.

Nucleic acids described herein include recombinant DNA and synthetic (e.g., chemically synthesized) DNA. Nucleic acids can be double-stranded or single-stranded. In the case of single-stranded nucleic acids, the nucleic acid can be a sense strand or antisense strand. Nucleic acids can be synthesized using oligonucleotide analogs or derivatives.

Plasmids that include a nucleic acid described herein can be transfected or transformed into host cells for expression. Techniques for transfection and transformation are known to those of skill in the art.

All publications mentioned herein are incorporated by reference in their entirety. It is to be understood that the term “or,” as used herein, denotes alternatives that may, where appropriate, be combined; that is, the term “or” includes each listed alternative separately as well as their combination. As used herein, unless the context clearly dictates otherwise, references to the singular, such as the singular forms “a,” an,” and “the,” include the plural, and references to the plural include the singular.

The invention is further defined by reference to the following examples that further describe the compositions and methods of the present invention, as well as its utility. It will be apparent to those skilled in the art that modifications, both to compositions and methods, may be practiced which are within the scope of the invention.

EXAMPLES

Bacterial Strains and Plasmids—

E. coli strains PR4019 (Rush, J. S., Rick, P. D. and Waechter, C. J. (1997) Glycobiology, 7, 315-322) and PR21546 (Meier-Dieter, U., Starman, R., Barr, K., Mayer, H. and Rick, P. I). (1990) J. Biol. Chem., 265, 13490-13497) were generous gifts from Dr. Paul Rick, Bethesda, Md., and E. coli O157:H45 (Stephan, R., Borel, N., Zweifel, C., Blanco, M, and Blanco, J. E. (2004) BMC Microbiol 4:10) was a gift from Dr. Claudio Zweifel, Veterinary Institute, University of Zurich, E. coli DH5α (Invitrogen) was used as the host for cloning experiments and for protein glycosylation analysis. Plasmids used are listed in Table 2.

TABLE 2

Plasmids used in Examples

Plasmid	Description	Ref

pMLBAD	Cloning vector, Tmp^R	Lefebre &
		Valvano
		(2002)
pMLBAD:Z3206	Z3206 in pMLBAD, Tmp^R, expression	Examples
(SEQ ID NO: 23)	controlled by arabinose-inducible	herein
	promoter
pMLBAD:gne	gne in pMLBAD, Tmp^R, expression	Examples
(SEQ ID NO: 24)	controlled by arabinose-inducible	herein
	promoter
pACYCpgl	C. jejuni pgl cluster Cm^R	Wacker,
		et al.
		(2002)
pACYCgne::kan	C. jejuni pgl cluster containing a kan	Linton, et
	cassette in gne, Cm^R, Kan^R	al. (2005)
pWA2	Soluble periplasmic hexa-His-tagged	Feldman,
	AcrA under control of Tet promoter in	et al.
	pBR322, Amp^R	(2005)

Materials—

[1,6-³H]GlcNAc (30 Ci/mmol), UDP-[1-³H]GlcNAc (20 Ci/mmol) and UDP-[6-³H]GalNAc (20 Ci/mmol) were obtained from American Radiolabeled Chemicals (St. Louis, Mo.). Quantum 1 silica gel G thin layer plates are a product of Quantum Industries (Fairfield, N.J.), and Baker Si250 Silica Gel G plates are manufactured by Mallinekrodt Chemical Works. Yeast extract and Bacto-peptone were products of BD Biosciences. All other chemicals were obtained from standard commercial sources. Trimethoprim (50 μg/ml), chloramphenicol (20 μg/ml), ampicillin (100 μg/ml), and kanamycin (50 μg/ml) were added to the media as needed.

Construction of Recombinant Plasmids—

E. coli strain DH5α was used for DNA cloning experiments and constructed plasmids were verified by DNA sequencing. The Z3206 gene was amplified from E. coli O157:H45 by PCR with oligonucleotides Z3206-Fw and Z3206-RvHA (AAACCCGGGATGAACGATAACG TTTTGCTC (SEQ ID NO: 17) and AAATCTAGATTAAGCGTAATCTGGAACATCGTATGGGTACTCAGAAACAA ACGTTATGTC (SEQ ID NO: 18): restriction sites are underlined). The PCR fragment was digested with SmaI and XbaI and ligated into SmaI-XbaI cleaved pMLBAD vector (Lefebre, M. D. and Valvano M. A. (2002) Appl Environ Microbiol 68: 5956-5964). This resulted in plasmid pMLBAD:Z3206 (SEQ ID NO: 23) encoding Z3206 with a C-terminal hemagglutinin tag.

The gne gene was amplified from pACYCpgl (Wacker, M., Linton, D., Hitchen, P. G., Nita-Lazar, M., Haslam, S. M., North, S. J., Panico, M., Morris, H. R., Dell, A., Wrenn, B. W., Aebi, M. (2002) Science 298, 1790-1793), encoding Campylobacter jejuni pgl cluster, with oligonucleotides gne-Fw and gne-RV (AAACCATGGATGAAAATTCTTATTAGCGG (SEQ ID NO: 19) and AAATCTAGATTAAGCGTAATCTGGAACATCGTATGGGTAGCACTGTTTTTC CCAATC (SEQ ID NO: 20); restriction sites are underlined). The PCR product was digested with NcoI and XbaI and ligated into the same sites of pMLBAD to generate plasmid pMLBAD:gne (SEQ ID NO: 24) which encodes One with a C-terminal hemagglutinin tag (Table 2).

Growth Conditions, Protein Expression and Immunodetection—

E. coli strains were cultured in Luria-Bertani medium (1% yeast extract, 2% Bacto-peptone, 0.6% NaCl) at 37° C. with vigorous shaking. Arabinose inducible expression was achieved by adding arabinose at a final concentration of 0.02-0.2% (w/v) to E. coli cells grown up to an A₆₀₀of 0.05-0.4. The same amount of arabinose was added again 5 h post-induction, and incubation continued for 4-15 h.

Analytical Procedures—

Protein concentrations were determined using the BCA protein assay (Pierce) after precipitation of membrane proteins with deoxycholate and trichloroacetic acid according to the Pierce Biotechnology bulletin “Eliminate Interfering Substances from Samples for BCA Protein Assay.” Samples were analyzed for radioactivity by scintillation spectrometry in a Packard Tri-Carb 2100TR liquid scintillation spectrometer after the addition of 0.5 ml of 1% SDS and 4 ml of Econosafe Economical Biodegradable Counting Mixture (Research Products International, Corp., Mount Prospect, Ill.).

Example 1: Identification of an E. coli O157 Gene Encoding GlcNAc-P-P-Und 4-Epimerase

We describe herein the surprising discovery of a new biosynthetic pathway in which GalNAc-P-P-Und is formed by the epimerization of the 4-OH of GlcNAc-P-P-Und catalyzed by the previously unknown action of a 4-epimerase. In this pathway, GlcNAc-P-P-Und is formed by the transfer of GlcNAc-P from UDP-GlcNAc, catalyzed by WecA, and then GlcNAc-P-P-Und is epimerized to GalNAc-P-P-Und by GlcNAc-P-P-Und-4-epimerase, which was a previously unknown pathway (FIG. 2.

The gene encoding a candidate for the GlcNAc-P-P-Und 4-epimerase was identified by DNA homology searches. Homology searches were performed using the U.S. National Library of Medicine databases found at http:blast.ncbi.nlm.nih.govBlast.cgi. Genomic sequences of different bacteria encoding O antigen repeating units having a GalNAc at the reducing terminus were screened. One group with a repeating unit containing a GalNAc at the reducing terminus, and a second group lacking a terminal GalNAc in the repeating unit were compared to identify potential epimerases. Using these criteria, Z3206 was identified as a candidate GlcNAc-P-P-Und 4-epimerase (Table 1).

The GlcNAc 4-epimerase genes present in E. coli strains with O-antigen repeat units containing GalNAc can be separated into two homology groups as shown in Table 1. It was surprisingly discovered that one homology group (containing grid) clearly was correlated with the presence of GalNAc as the initiating sugar on the O-antigen repeat unit. It was further surprisingly discovered that the second group (containing gne2) exhibits a high degree of similarity to the UDP-Glc epimerase, GalE, and is found in E. coli strains that do not initiate O-antigen repeat unit synthesis with GalNAc. Z3206 in E. coli O157, a gene with a high degree of homology to gne1, was identified as a candidate GlcNAc-P-P-Und 4-epimerase. The genomic location of the Z3206 gene is consistent with a role in this pathway, as it resides between galF of the O-antigen cluster and wcaM which belongs to the colanic acid cluster.

The research described in Examples 2-11 further confirms the above discoveries, including identifying the GlcNAc 4-epimerase (E. coli O157 Z3206) as catalyzing the formation of GalNAc-P-P-Und.

Example 2: UDP-GalNAc is not a Substrate for E. coli WecA (GlcNAc-phosphotransferase)

To determine if E. coli WecA will utilize UDP-GalNAc as a GalNAc-P donor to form GalNAc-P-P-Und, membrane fractions from E. coli strains K12, PR4019, a WecA-overexpressing strain, and O157, which synthesize a tetrasaccharide O-antigen repeat unit with GalNAc at the reducing terminus presumably initiated by the synthesis of GalNAc-P-P-Und, were incubated with UDP-[³H]GalNAc.

Preparation of E. coli Membranes—

Bacterial cells were collected by centrifugation at 1,000×g for 10 min, washed once in ice-cold phosphate-buffered saline, once with cold water, and once with 10 mM Tris-HCl, pH 7.4, 0.25 M sucrose. The cells were resuspended to a density of ˜200 A₆₀₀units/ml in 10 mM Tris-HCl, pH 7.4, 0.25 M sucrose, 10 mM EDTA containing 0.2 mg/ml lysozyme, and incubated at 30° C. for 30 min. Bacterial cells were recovered by centrifugation at 1,000×g for 10 min, quickly resuspended in 40 volumes of ice-cold 10 mM Tris-HCl, pH 7.4, and placed on ice. After 10 min the cells were homogenized with 15 strokes with a tight-fitting Dounce homogenizer and supplemented with 0.1 mM phenylmethylsulfonyl fluoride and sucrose to a final concentration of 0.25 M. Unbroken cells were removed by centrifugation at 1,000×g for 10 min, and cell envelopes were recovered by centrifugation at 40,000×g for 20 min. The membrane fraction was resuspended in 10 mM Tris-HCl, pH 7.4, 0.25 M sucrose, 1 mM EDTA and again sedimented at 40,000×g and resuspended in the same buffer to a protein concentration of ˜20 mg/ml. Membrane fractions were stored at −20° C. until needed.

Assay for the Biosynthesis of [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und in E. coli Membranes In Vitro—

Reaction mixtures for the synthesis of GlcNAc-P-P-Und and GalNAc-P-P-Und contained 50 mM Tris-HCl,

pH

8, 40 mM MgCl₂, 5 mM dithiothreitol, 5 mM 5′ AMP. E. coli membrane fraction (50-200 μg membrane protein, and either 5 μm UDP-[³H]GlcNAc/GalNAc (500-2500 dpm/pmol) in a total volume of 0.05 ml. After incubation at 37° C., reactions were terminated by the addition of 40 volumes of CHCl₃/CH₃OH (2:1), and the total lipid extract containing [³H]HexNAc-P-P-undecaprcnols was prepared as described previously (Waechter. C. J., Kennedy, J. L. and Harford, J. B. (1976) Arch. Biochem, Biophys. 174, 726-737). After partitioning, the organic phase was dried under a stream of nitrogen and redissolved in 1 ml CHCl₃/CH₃OH (2:1), and an aliquot (0.2 ml) was removed, dried in a scintillation vial, and analyzed for radioactivity by liquid scintillation spectrometry in a Packard Tri-Carb 2100 TR liquid scintillation spectrometer. To determine the rate of synthesis of [³H]GlcNAc-P-P-Und or [³H]GalNAc-P-P-Und, the lipid extract was dried under a stream of nitrogen, redissolved in a small volume of CHCl₃/CH₃OH (2:1), and spotted on a 10×20-cm borate-impregnated Baker Si250 silica gel plate, and the plate was developed with CHCl₃, CH₃OH, H₂O, 0.2 M sodium borate (65:25:2:2). Individual glycolipids were detected with a Bioscan AR2000 Imaging Scanner (Bioscan, Washington, D.C.). The biosynthetic rates for each glycolipid were calculated by multiplying the total amount of radioactivity in [³H]GlcNAc/GalNAc-P-P-Und by the percentage of the individual [³H] glycolipids.

Membrane fractions from different E. coli strains (K12, PR4019 and O157) were incubated with either UDP-[³H]GlcNAc or UDP-[³H]GalNAc and the incorporation into [³H]GlcNAc/GalNAc-P-P-Und was determined as described above. As seen in Table 3, no labeled glycolipids were detected after the incubation with UDP-[³H]GalNAc, only GlcNAc-P-P-Und was detectable when membrane fractions were incubated with UDP-[³H]GlcNAc

TABLE 3

Synthesis of [³H]GlcNAc/GalNAc-P-P-undecaprenol in E. coli membrane
fractions using either UDP-[³H]GlcNAc or UDP-[³H]GalNAc as substrate

[³H]Glycolipid formed

Source of	Sugar nucleotide	GlcNAc-P-P-Und	GalNAc-P-P-Und
membranes	added	(pmol/mg)	(pmol/mg)

K12	UDP-[³H]GlcNAc	6.4	<0.01
K12	UDP-[³H]GalNAc	<0.01	<0.01
PR4019	UDP-[³H]GlcNAc	44	<0.01
PR4019	UDP-[³H]GalNAc	<0.01	<0.01
O157	UDP-[³H]GlcNAc	1.5	0.5
O157	UDP-[³H]GalNAc	<0.01	<0.01

Moreover, neither the addition of exogenous Und-P to incubations with membranes from PR4019, the WecA-overexpressing strain, or the addition of cytosolic fractions from O157 cells resulted in the formation of GalNAc-P-P-Und from UDP-GalNAc. These results demonstrate that UDP-GalNAc is not a substrate for WecA and suggest that GalNAc-P-P-Und is formed by an alternative mechanism.

When membranes from strain K12 were incubated with UDP-[³H]GlcNAc, [³H]GlcNAc-P-P-Und was synthesized as expected (Rush, J. S., Rick, P. D. and Waechter, C. J. (1997) Glycobiology, 7, 315-322). However, when membranes from strain O157 were incubated with UDP-[³H]GlcNAc, in addition to [³H]GlcNAc-P-P-Und, a second labeled lipid shown to be [³H]GalNAc-P-P-Und (see below) was observed. When the time course for the formation of the two glycolipids was examined, the incorporation of radioactivity into [³H]GlcNAc-P-P-Und (FIG. 1, O) occurred more quickly and to a higher extent than into [³H]GalNAc-P-P-Und (FIG. 1, ●), compatible with a precursor-product relationship (FIG. 2).

The observation that E. coli O157 membranes do not utilize UDP-GalNAc as a GalNAc-P donor for the synthesis of GalNAc-P-P-Und is one example which confirms the biosynthetic pathway for the formation of GalNAc-P-P-Und illustrated in FIG. 2. In this scheme, GlcNAc-P-P-Und is formed by the transfer of GlcNAc-P from UDP-GlcNAc, catalyzed by WecA, and then GlcNAc-P-P-Und is epimerized by the action of a previously unknown 4-epimerase to produce GalNAc-P-P-Und.

Example 3: Characterization of [³H]GalNAc-P-P-Und Formed In Vitro with Membrane Fractions from E. coli Strain O157

Consistent with the additional O157-specific glycolipid product detected in FIG. 1, as GalNAc-P-P-Und, it was stable to mild alkaline methanolysis (toluene/methanol 1:3, containing 0.1 N KOH, 0° C., 60 min), retained by DEAE-cellulose equilibrated in CHCl₃/CH₃OH/H₂O (10:10:3), and eluted with CHCl₃/CH₃OH/H₂O (10:10:3) containing 20 mM ammonium acetate as reported previously for [³H]GlcNAc_1-2-P-P-Dol (Waechter, J. and Harford, B. (1977) Arch. Biochem. Biophys. 181, 185-198).

[³H]GalNAc-P-P-Und was clearly resolved from [³H]GalNAc-P-P-Und by thin layer chromatography on borate-impregnated silica gel G (Kean, E. L. (1966) J. Lipid Res. 7, 149-452) and purified by preparative TLC as shown in FIG. 3A and FIG. 3B.

Preparation of Borate-Impregnated Thin Layer Plates and Whatman No. 1 Paper—

Silica gel thin layer plates were impregnated with sodium borate by briefly immersing the plates in 2.5% Na₂B₄O₇.10 H₂O in 95% methanol as described by Kean (Kean, E. L. (1966) J. Lipid Res. 7.449-452). The borate-impregnated TLC plates were dried overnight at room temperature and stored in a vacuum dessicator over Drierite until use. Immediately before chromatography, the plates were activated by heating briefly (˜10-15 min) to 100° C. Whatman No. 1 paper was impregnated with sodium borate by dipping 20×30-cm sheets of Whatman 1 paper in 0.2 M Na₂B₄O₇.10H₂O. The Whatman No. 1 paper sheets were pressed firmly between two sheets of Whatman No. 3MM paper and allowed to dry at room temperature for several days, as described by Cardini and Leloir (Cardini, C. E. and Leloir, L. F. (1957) J. Biol. Chem. 225, 317-324).

Characterization of Glycan Products Formed in In Vitro Reactions—

The glycans of the individual glycolipids ([³H]GalNAc-P-P-Und and [³H]GlcNAc-P-P-Und) were characterized by descending paper chromatography after release by mild acid hydrolysis. The GlcNAc/GalNAc lipids were dried under a stream of nitrogen in a conical screw-cap tube and heated to 100° C., 15 min in 0.2 ml 0.01 M HCl. After hydrolysis the samples were applied to a 0.8-ml mixed-bed ion-exchange column containing 0.4 ml of AG50WX8 (H⁺) and 0.4 ml AG1X8 (acetate form) and eluted with 1.5 ml water. The eluate was dried under a stream of nitrogen, redissolved in a small volume of H₂O (0.02 ml), spotted on a 30-cm strip of borate-impregnated Whatman No. 1 paper, and developed in descending mode with butanol/pyridine/water (6:4:3) for 40-50 h. After drying, the paper strips were cut into 1-cm zones and analyzed for radioactivity by scintillation spectrometry. GlcNAc and GalNAc standards were detected using an aniline-diphenylamine dip reagent (Schwimmer, S. and Benvenue, A. (1956) Science 123, 543-544).

Glycan products were converted to their corresponding alditols by reduction with 0.1 M NaBH₄in 0.1 M NaOH (final volume ml) following mild acid hydrolysis as described above. After incubation at room temperature overnight, the reactions were quenched with several drops of glacial acetic acid and dried under a stream of nitrogen out of methanol containing 1 drop of acetic acid, several times. The alditols were dissolved in water, desalted by passage over 0.5 ml columns of AG50WX8 (H+) and AG1X8 (acetate), dried under nitrogen, and spotted on 30-cm strips of Whatman No. 3MM paper. The Whatman No. 3 MM strips were developed overnight in descending mode with ethyl acetate, pyridine, 0.1 M boric acid (65:25:20), dried, cut into 1-cm zones, and analyzed for radioactivity by scintillation spectrometry. GlcNAcitol and GalNAcitol standards were visualized using a modification of the periodate-benzidine dip procedure (Gordon, H. T., Thornburg, W. and Werum, L. N. (1956) Anal. Chem. 28, 849-855). The paper strips were dipped in acetone, 0.1 M NaIO₄(95:5), allowed to air dry for 3 min, and then dipped in acetone/acetic acid/H₂O/o-tolidine (96:0.6:4.4:0.2 gm). Alditols containing cis-diols stain as yellow spots on a blue background.

Mass Spectrometry (“MS”) of Glycolipids—

Purified glycolipids were analyzed using an ABI/MDS Sciex 4000 Q-Trap hybrid triple quadrupole linear ion trap mass spectrometer with an ABI Turbo V electrospray ionsource (ABIMDS-Sciex, Toronto, Canada). In brief, samples were infused at 10 μl/min with ion source settings determined empirically, and MS/MS (mass spectroscopy in a second dimension) information was obtained by fragmentation of the molecular ion in linear ion trap mode.

When the glycolipid was treated with mild acid (0.01 N HCl, 100° C., 15 min), the water-soluble product co-chromatographed with [³H]GalNAc on descending paper chromatography with borate-impregnated Whatman No. 1 paper (FIG. 3C). In addition, when the labeled sugar was reduced, it was converted to [³H]alditol, GalNAc-OH (FIG. 3D). Moreover, negative-ion MS analysis yielded the [M-H]-ion of m/z=1128, expected for GalNAc-P-P-Und, and the MS/MS daughter ion spectrum showed a prominent ion at m/z=907, expected for a glycolipid containing P-P-Und (Guan, Z., Breazeale, S. D. and Raetz, C. R. (2005) Anal. Biochem. 345, 336-339). The identification of the glycolipid product formed by strain O157 as GalNAc-P-P-Und is also supported by its formation from exogenous GlcNAc-P-P-Und (see Example 7).

Example 4: Metabolic Labeling of [³H]GalNAc-P-P-Und (In Vivo) with [³H]GlcNAc in E. coli Cells Expressing the Z3206 Gene

To investigate whether expression of the E. coli O157 Z3206 gene enabled cells to synthesize GalNAc-P-P-Und, E. coli strain 21546 (Meier-Dieter, U., Starman, R., Barr, K., Mayer, H. and Rick, P. D. (1990) J. Biol. Chem., 265, 13490-13497) expressing the Z3206 gene was labeled metabolically with [³H]GlcNAc and analyzed for [³H]GlcNAc/GalNAc-P-P-Und formation.

Metabolic Labeling of Bacterial Cells—

E. coli cells were cultured with vigorous shaking in Luria-Bertani medium at 37° C. to an A₆₀₀of 0.5-1. [³H]GlcNAc was added to a final concentration of 1 μCi/ml and the incubation was continued for 5 min at 37° C. The incorporation of radiolabel into glycolipids was terminated by the addition of 0.5 gm/ml crushed ice, and the cultures were thoroughly mixed. The bacterial cells were recovered by centrifugation at 4000×g for 10 min, and the supernatant was discarded. The cells were washed with ice-cold phosphate-buffered saline two times, resuspended by vigorous vortex mixing in 10 volumes (cell pellet) of methanol, and sonicated briefly with a probe sonicator at 40% full power. After sonication, 20 volumes of chloroform were added, and the extracts were mixed vigorously and allowed to stand at room temperature for 15 min. The insoluble material was sedimented by centrifugation, and the pellet was re-extracted with a small volume of CHCl₃/CH₃OH (2:1) twice. The combined organic extracts were then processed as described below.

Purification of GlcNAc-P-P-Und and GalNAc-P-P-Und—

GlcNAc/GalNAc-P-P-Und was extracted with CHCl₃/CH₃OH (2:1) and freed of water-soluble material by partitioning as described elsewhere (Waechter, C. J., Kennedy, J. L. and Harford, J. B. (1976) Arch. Biochem. Biophys. 174, 726-737). The organic extract was then dried under a stream of nitrogen, and the bulk glycerophospholipids were destroyed by deacylation in toluene/methanol (1:3) containing 0.1 N KOH at 0° C. for 60 min. The deacylation reaction was neutralized with acetic acid, diluted with 4 volumes of CHCl₃/CH₃OH (2:1), and washed with 15 volume of 0.9% NaCl. The organic (lower) phase was washed with 13 volume of CHCl₃, CH₃OH, 0.9% NaCl (3:48:47), and the aqueous phase was discarded. The organic phase was diluted with sufficient methanol to accommodate the residual aqueous phase in the organic phase and applied to a DEAE-cellulose column (5 ml) equilibrated with CHCl₃/CH₃OH (2:1). The column was washed with 20 column volumes of CHCl₃/CH₃OH/H₂O (10:10:3) and then eluted with CHCl₃/CH₃OH/H₂O (10:10:3) containing 20 mM ammonium acetate. Fractions (2 ml) were collected and monitored for either radioactivity, or GlcNAc/GalNAc-P-P-Und using an anisaldehyde spray reagent (Dunphy, P. J., Kerr, J. D., Pennock, J. F., Whittle, K. J., and Feeney, J. (1967) Biochim. Biophys. Acta 136, 136-147) after resolution by thin layer chromatography on borate-impregnated silica plates (as described earlier).

E. coli strain 21546 was selected as the host for the Z3206 expression studies because a mutation in UDP-ManNAcA synthesis results in a block in the utilization of GlcNAc-P-P-Und for the synthesis of the enterobacterial common antigen. Because E. coli 21546 is derived from E. coli K12 it does not synthesize an O-antigen repeat as well (Stevenson, G., Neal, B., Liu, D., Hobbs, M., Packer, N. H., Batley, M., Redmond, J. W., Lindquist, L. and Reeves, P. (1994) J. Bacterial., 176, 4144-4156), and thus, larger amounts of GlcNAc-P-P-Und accumulate for the conversion to GalNAc-P-P-Und. When strain 21546 and the transformant expressing the Z3206 gene were labeled with [³H]GlcNAc and the radiolabeled lipids were analyzed by thin layer chromatography on borate-impregnated silica gel plates, the parental strain (FIG. 4A) synthesized only one labeled lipid, GlcNAc-P-P-Und. However, 21546 cells expressing the Z3206 gene (FIG. 4B) also synthesized an additional labeled lipid shown to be GalNAc-P-P-Und.

Example 5: Membrane Fractions from E. coli Cells Expressing the Z3206 Gene Synthesize GalNAc-P-P-Und In Vitro

To corroborate that the protein encoded by the E. coli O157 Z3206 gene catalyzed the synthesis of GalNAc-P-P-Und, membrane fractions from E. coli cells expressing the Z3206 gene were incubated with [³H]UDP-GlcNAc and the [³H]glycolipid products were analyzed by thin layer chromatography (chromatographic preparation and characterization methods are described in Example 3) on borate-impregnated silica gel plates as shown in FIG. 5. When membrane fractions from E. coli K12 or the host strain E. coli 21546 cells were incubated with UDP-[³H]GlcNAc, only [³H]GlcNAc-P-P-Und was observed (FIG. 5A and FIG. 5C). However, membrane fractions from E. Coli O157 and E. coli 21546 expressing Z3206 formed GalNAc-P-P-Und as well (FIG. 5B and FIG. 5D).

Example 6: Formation of GlcNAc-P-P-Und, but not GalNAc-P-P-Und, is Reversed in the Presence of UMP

To provide additional evidence that GalNAc-P-P-Und is synthesized from GlcNAc-P-P-Und, and not by the action of WecA using UDP-GalNAc as a glycosyl donor, the effect of discharging endogenous, pre-labeled [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und with UMP was examined. The GlcNAc-phosphotransferase reaction catalyzed by WecA is freely reversible by the addition of excess UMP re-synthesizing UDP-GlcNAc and releasing Und-P.

In this experiment membrane fractions from E. coli strain 21546 expressing Z3206 were pre-labeled for 10 min with UDP-[³H]GlcNAc followed by the addition of 1 mM UMP, and the amount of each labeled glycolipid remaining was determined. The results illustrated in FIG. 6A show the relative amounts of [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und at the end of the 10 min labeling period. After incubation with 1 mM UMP for 1 min it can be seen that there is a substantial loss of [³H]GalNAc-P-P-Und, whereas the [³H]GalNAc-P-P-Und peak is relatively unchanged (FIG. 6B) (chromatographic preparation and characterization methods are described in Example 5), This observation is consistent with the results in Table 3 indicating that WecA does not catalyze the transfer of GalNAc-P into GalNAc-P-P-Und from UDP-GalNAc. It is noteworthy that during the second minute of incubation with UMP (FIG. 6C), the loss of GlcNAc-P-P-Und slows, and there is a slight reduction in the peak of [³H]GalNAc-P-P-Und, suggesting that [³H]GalNAc-P-P-Und is re-equilibrating with the [³H]GlcNAc-P-P-Und pool by reversal of the epimerase reaction (see Example 7).

Example 7: Interconversion of Exogenous, Purified [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und Catalyzed by Membranes from E. Coli Cells Expressing Z3206

To provide direct evidence that GlcNAc-P-P-Und and GalNAc-P-P-Und can be directly interconverted by membrane fractions from E. coli cells expressing Z3260, purified [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und were tested as exogenous substrates.

Purified [³H]GlcNAc-P-P-Und/[³H]GalNAc-P-P-Und were prepared as in Example 4 (Metabolic Labeling of Bacterial Cells and Purification of GlcNAc-P-P-Und and GalNAc-P-P-Und). [³H]HexNAc-P-P-undecaprenols (2000 dpm/pmol, dispersed in 1% Triton X-100, final concentration 0.1%) were incubated with E. coli membranes as in Example 2 in Assay For the Biosynthesis of [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und in E. coli Membranes In Vitro.

Preliminary experiments showed that the epimerase was active when exogenous [³H]GalNAc-P-P-Und was added to the reaction mixtures dispersed in Triton X-100, CHAPS (3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid), Nonidet P-40, or octylglucoside and exhibited a pH optimum in the range 7-8.5. The chromatographic mobility of the purified [³H]GlcNAc-P-P-Und and [³H]GalNAc-P-P-Und before incubation with membrane fractions is shown in FIG. 7A and FIG. 7D. As seen in FIG. 7B and FIG. 7E, the glycolipids are unaffected by incubation with membrane fractions from E. coli 21546. However, incubation of the purified glycolipids with membrane fractions from E. coli 21546 expressing Z3206 catalyzes the conversion of exogenous [³H]GlcNAc-P-P-Und to [³H]GalNAc-P-P-Und (FIG. 7C) and the conversion of [³H]GalNAc-P-P-Und to [³H]GlcNAc-P-P-Und (FIG. 7F). These results demonstrate directly that GlcNAc-P-P-Und and GalNAc-P-P-Und can be enzymatically interconverted in E. coli strains expressing the Z3206.

Example 8: E. coli Z3206 is not a UDP-GlcNAc 4-Epimerase

To determine if Z3206 can catalyze the formation of UDP-GalNAc, the N-glycosylation apparatus from C. jejuni was expressed in E. coli. In this reporter system, glycosylation of the target protein AcrA is dependent on the presence of the pgl locus (Wacker, M., Linton, D., Hitchen, P. G., Nita-Lazar, M., Haslam, S. M., North, S. J., Panico, M., Morris, H. R., Dell, A., Wrenn, B. W., Aebi, M. (2002) Science 298, 1790-1793), including a functional Gne UDP-Glc/UDP-GlcNAc epimerase (Bernatchez, S., Szymanski, C. M., Ishiyama, N., Li, J., Jarrell, H. C., Lau, P. C., Berghuis, A. M., Young, N. M., Wakarchuk, W. W. (2005) J. Biol. Chem. 280, 4792-4802). Glycosylation of AcrA is lost if the pgl cluster contains a deletion of gne (Linton, D., Dorrell, N., Hitchen, P. G., Amber, S., Karlyshev, A. V., Morris, H. R., Dell, A., Valvano, M. A., Aebi, M. and Wren, B. W. (2005) Mol Microbiol. 55, 1695-1703). The ability of Z3206 to restore AcrA-glycosylation in the presence of the pgl operon Δgne was investigated in vivo by expressing AcrA (pWA2) together with the pgl locus Δgne complemented by either Gne (pMLBAD:gne) or Z3206 (pMLBAD:Z3206).

Total E. coli cell extracts were prepared for immunodetection analysis using cells at a concentration equivalent to 1 A₆₀₀unit that were resuspended in 100 μl of SDS loading buffer (Laemmli, U. (1970) Nature 227, 680-685). Aliquots of 10 μl were loaded on 10% SDS-PAGE. Periplasmic extracts of E. coli cells were prepared by lysozyme treatment (Feldman, M. F., Wacker, M., Hernandez, M., Hitchen, P. G., Marolda, C. L., Kowarik, M., Morris, H. R., Dell, A., Valvano, M. A., Aebi, M. (2005) Proc Natl Acad Sci USA 102, 3016-3021), and 10 μl of the final sample (corresponding to 0.2 A₆₀₀units of cells) was analyzed by SDS-PAGE. After being blotted on nitrocellulose membrane, sample was immunostained with the specific antiserum (Aebi, M., Gasscnhuber, J., Domdey, H., and te Heesen, S. (1996) Glycobiology 6, 439-444). Anti-AcrA (Wacker, M., Linton, D., Hitchen, P. G., Nita-Lazar, M., Haslam, S. M., North, S. J., Panico, M., Morris, H. R., Dell, A., Wrenn, B. W., Aebi, M. (2002) Science 298, 1790-1793) antibodies were used. Anti-rabbit IgG-HRP (Bio-Rad) was used as secondary antibody. Detection was carried out with ECL™ Western blotting detection reagents (Amersham Biosciences).

As shown in FIG. 8, the glycosylated protein, which migrates slower than the unglycosylated form, was formed only when cells expressing pgl locus Δgne were complemented by One (lane 2). Z3206 was unable to restore glycosylation of the reporter glycoprotein (FIG. 8, lane 1). Accordingly, Z3206 does not complement glycosylation of AcrA in a Gne dependent glycosylation system. Expression of Gne and membrane-associated Z3206 were confirmed by immunodctection.

Example 9: Analysis of S. flexneri 6+/− Z3206 LPS

In FIG. 9 are depicted some of the genes required for the biosynthesis of the Shigella flexneri 6 O-antigen: genes encoding enzymes for biosynthesis of nucleotide sugar precursors; genes encoding glycosyltransferases; genes encoding O antigen processing proteins; and genes encoding proteins responsible for the O-acetylation. The structure of the O antigen has been elucidated by Dmitriev, B. A. et al (Dmitriev. B. A., et al Somatic Antigens of Shigella Eur J Biochem, 1979. 98: p. 8; Liu B et al Structure and genetics of Shigella O antigens FEMS Microbiology Review, 2008. 32: p. 27).

To identify all the genes required for the biosynthesis of the Shigella flexneri 6 O-antigen a genomic library was constructed.

Cloning of S. flexneri 6 genomic DNA_—

S. flexneri 6 genomic DNA was isolated using a Macherey-Nagel NucleoSpin® Tissue Kit following the protocol for DNA isolation from bacteria. DNA was isolated from five S. flexneri 6 overnight cultures at 2 ml each and final elution was done with 100 μl elution buffer (5 mM Tris/HCl, pH 8.5). The eluted fractions were pooled, precipitated by isopropanol and the final pellet was resuspended in 52 μl TE buffer of which the total volume was subjected to end-repair according to the protocol given by CopyControl™ Fosmid Library Production Kit (EPICENTRE). End-repaired DNA was purified on a 1% low melting point agarose gel run with 1×TAE buffer, recovered and precipitated by ethanol as described in the kit protocol. Resuspension of the precipitated DNA was done in 7 μl TE buffer of which 0.15 μl DNA was ligated into pCC1FOS (SEQ ID NO: 27) according to the EPICENTRE protocol. Packaging of the ligation product into phage was performed according to protocol and the packaged phage was diluted 1:1 in phage dilution buffer of which 10 μl were used to infect 100 μl EPI300-T1 cells that were previous grown as described by EPICENTRE. Cells (110 μl) were plated six times with approximately 100 colonies per plate such that the six plates contain the entire S. flexneri 6 genomic library. Plates were developed by colony blotting and positive/negative colonies were western blotted and silver stained.

Colony Blotting_—

For colony blots a nitrocellulose membrane was laid over the solid agar plate, removed, washed three times in 1×PBST and treated in the same manner. The membrane was first blocked in 10% milk for one hour at room temperature after which it was incubated for one hour at room temperature in 2 ml 1% milk (in PBST) with the anti-type VI antiserum (primary antibody). After three washes in PBST at 10 minutes each, the membrane was incubated for another hour at room temperature in the secondary antibody, 1:20000 peroxidase conjugated goat-anti-rabbit IgG (BioRad) in 2 ml 1% milk (in PBST). After a final three washes with PBST (10 minutes each) the membrane was developed in a UVP Chemi Doc Imaging System with a 1:1 mix of luminol and peroxide buffer provided by the SuperSignal® West Dura Extended Duration Substrate Kit (Thermo Scientific).

The clone reacting with S. flexneri 6 antiserum following production of a S. flexneri 6 genomic library was sequenced by primer walking out of the region previously sequenced by Liu et al. (Liu et al., 2008) reaching from rmlB to wtbZ (FIG. 9). Primers rmlB_rev and wfbZ_fwd (S. flexneri—Z3206) annealed in rmlB and wfbZ and were used to sequence the insert of the clone until wcaM and hisI/F were reached (S. flexneri+Z3206), respectively (FIG. 10).

In order to establish whether O antigen synthesis is maintained in clones lacking Z3206 (thus hindering epimerization of und-GlcNAc to und-GalNAc), two plasmids were constructed (SEQ ID NO. 28 and SEQ ID NO. 29) (FIG. 10), transformed into E. coli cells and analyzed by silver staining and western blot.

As shown in FIG. 11, LPS is produced in E. coli cells + or −Z3206. The O antigen can be produced without Z3206 however with lower production yield, which indicates that the efficiency of polysaccharide production without the epimerase (Z3206) is lower.

Example 10: Analysis of S. flexneri 6+/− Z3206 LLO

Purification of Undecaprenol-PP-O Antigen by C18 Column Chromatography_—

E. coli cells expressing S. flexeneri antigen+/− Z3206 were pelleted, washed once in 50 ml 0.9% NaCl and the final pellets were lyophilized overnight. The pellets were washed once in 30 ml 85-95% methanol, reextracted with 10:10:3 chloroform-methanol-water (v/v/v) and the extracts were converted to a two-phase Bligh/Dyer system by addition of water, resulting in a final ratio of 10:10:9 (C:M:W). Phases were separated by centrifugation and the upper aqueous phases were loaded each on a C18 Sep-Pak cartridge conditioned with 10 ml methanol and equilibrated with 10 ml 3:48:47 (C:M:W). Following loading, the cartridges were washed with 10 ml 3:48:47 (C:M:W) and eluted with 5 ml 10:10:3 (C:M:W). 20 OD samples of the loads, flow-throughs, washes and elutions of the C18 column were dried in an Eppendorf Concentrator Plus, washed with 250 μl methanol, reevaporated and washed a further three times with 30 μl ddH2O.

Glycolipid Hydrolysis

The glycolipid samples from the wash of the C18 column were hydrolysed by dissolving the dried samples in 2 ml n-propanol:2 M trifluoroacetic acid (1:1), heating to 50° C. for 15 minutes and evaporating to dryness under N2.

Oligosaccharide Labeling with 2-Aminobenzoate and HPLC

Labeling was done according to Bigge et al. (Bigge, 1995) and glycan cleanup was performed using the paper disk method described in Merry et al. (2002) (Merry et al., 2002). Separation of 2-AB labeled glycans was performed by HPLC using a GlycoSep-N normal phase column according to Royle et al. (Royle, 2002) but modified to a three solvent system. Solvent A was 10 mM ammonium formate pH 4.4 in 80% acetonitrole. Solvent B was 30 mM ammonium formate pH 4.4. in 40% acetonitrile. Solvent C was 0.5% formic acid. The column temperature was 30° C. and 2-AB labeled glycans were detected by fluorescence (λex=330 nm, λem=420 nm). Gradient conditions were a linear gradient of 100% A to 100% B over 160 minutes at a flow rate of 0.4 ml/min, followed by 2 minutes 100% B to 100% C, increasing the flow rate to 1 ml/min. The column was washed for 5 minutes with 100% C, returning to 100% A over 2 minutes and running for 15 minutes at 100% A at a flow rate of 1 ml/min, then returning the flow rate to 0.4 ml/min for 5 minutes. All samples were injected in water.

The plasmids expressing the S. flexneri O-antigen with (SEQ ID NO: 29) or without (SEQ ID NO: 28) Z3206 were transformed into SCM3 cells (FIG. 10). Traces at late elution volumes shows a difference between the curves of the two samples containing the S. flexneri O antigen+/−Z3206 (FIG. 12). This difference in the elution pattern can be explained by a different oligosaccharide structure carrying a different monosaccharide at the reducing end: GlcNAc or GalNAc depending on the presence of the epimerase (Z3206).

Example 11: Analysis of pglB Specificity by Production and Characterization of Bioconjugate Produced from S. flexneri 6+/−Z3206

To assess whether pglB can transfer oligosaccharides having GlcNAc (S. flexneri 6 O-antigen) at the reducing end to the carrier protein EPA Nickel purified extracts from E. coli cells expressing EPA (SEQ ID NO: 25), PglB (SEQ ID NO: 26) and S. flexneri 6 O-antigen+/−Z3206 (SEQ ID NO: 29/SEQ ID NO: 28) were analyzed by western blot using anti EPA and anti type VI antibodies. The S. flexneri O6 antigen with and without GalNAc at the reducing end was transferred to EPA by PglB as detected by antiEPA and anti VI antisera (FIG. 13).

The O antigen is still produced and detected, but with lower production yield, which indicates that the efficiency of polysaccharide production without the epimerase is lower.

While this invention has been particularly shown and described with references to embodiments thereof, it will be understood by those skilled in the art that various changes in form and detail may be made therein without departing from the scope of the invention encompassed by the claims. Such various changes that will be understood by those skilled in the art as covered within the scope of the invention include, in particular, N-glycosylated proteins and bioconjugates comprising a glycan other than those from E. coli and S. flexneri with GalNAc at the reducing terminus.


Sequence Listing

Applicant: GlycoVaxyn AG

Title: Biosynthetic System That Produces Immunogenic

Polysaccharides In Prokaryotic Cells

Number of SEQ ID NOs: 29

Nucleotide Sequence for E. coli O157 Z3206

Length: 993

Type: DNA

Organism: E. coli O157

Sequence:

SEQ ID NO: 1

ATGAACGATAACGTTTTGCTCATAGGAGCTTCCGGATTCGTAGGAACCCGACTACTTGAAACGG

CAATTGCTGACTTTAATATCAAGAAGCTGGACAAACAGCAGAGCCACTTTTATCCAGAAATCAC

ACAGATTGGCGATGTTCGCCATCAACAGGCACTGGACCAGGCGTTAGTCGGTTTTGACACTGTT

GTACTACTGGCAGCGGAACACCGCGATGACGTCAGCCCTACTTCTCTCTATTATGATGTCAACG

TTCAGGGTAGCCGCAATGTGCTGGCGGCCATGGAAAAAAATGGCGTTAAAAATATCATCTTTAC

CAGTTCCGTTGCTGTTTATGGTTTGAACAAACACAACCCTGACGAAAACCATCCACACGACCCT

TTGAACCACTACGGCAAAAGTAAGTGGCAGGCAGAGGAAGTGCTGCGTGAATGGTATAACAAAG

CACCAACAGAACGTTCATTAACCATCATCCGTGCTACCGTTATCTTCGGTGAACGCAACCGCGG

TAACGTCTATAACTTGCTGAAACAGATCGGTGGCGGCAAGTTTATGATGGTGGGCGCAGGGACT

AACTATAAGTCCATGGCTTATGTTGGAAACATTGTTGAGTTTATGAAGTACAAACTGAAGAATG

TTGCCGCAGGTTATGAGGTTTATAACTACGTTGATAAGCCAGACCTGAACATGAACCAGTTGGT

TGCTGAAGTTGAACAAAGCCTGAACAAAAAGATCCCTTCTATGCACTTGCCTTACCCACTAGGA

ATGCTGGGTGGATATTGCTTTGATATCCTGAGCAAAATTACGGGCAAAAAATACGCTGTCAGCT

CAGTGCGCGTGAAAAAATTCTGCGCAACAACACAGTTTGACGCAACGAAAGTGCATTCTTCAGG

TTTTGTGGCACCGTATACGCTGTCGCAAGGTCTGGATCGAAGACTGCAGTATGAATTCGTTCAT

GCCAAAAAAGACGACATAACGTTTGTTTCTGAG

Amino Acid Sequence for Z3206

Length: 331

Type: PRT

Organism: E coli O157

Sequence:

SEQ ID NO: 2

MNDNVLLIGASGFVGTRLLETAIADFNIKNLDKQQSHFYPEITQIGDVRDQQALDQALVGFDTV

VLLAAEHRDDVSPTSLYYDVNVQGTRNVLAAMEKNGVKNIIFTSSVAVYGLNKHNPDENHPHDP

FNHYGKSKWQAEEVLREWYNKAPTERSLTIIRPTVIFGERNRGNVYNLLKQIAGGKFMMVGAGT

NYKSMAYVGNIVEFIKYKLKNVAAGYEVYNYVDKPDLNMNQLVAEVEQSLNKKIPSMHLPYPLG

MLGGYCFDILSKITGKKYAVSSVRVKKFCATTQFDATKVHSSGFVAPYTLSQGLDRTLQYEFVH

AKKDDITFVSE

Nucleotide Sequence for E. coli O55 gne

Locus AF461121_1 BCT 2 May 2002

Definition (UDP-GlcNAc 4-epimerase Gne [Escherichia coil])

Accession AAL67550

Length: 993

Type: DNA

Organism: E. coli O55

Sequence:

SEQ ID NO: 3

ATGAACGATA ACGTTTTGCT CATAGGAGCT TCCGGATTCG TAGGAACCCG

ACTACTTGAA ACGGCAATTG CTGACTTTAA TATCAAGAAC CTGGACAAAC

AGCAGAGCCA CTTTTATCCA GAAATCACAC AGATTGGTGA TOTTCGTGAT

CAACAGGCAC TCGACCAGGC GTTAGCCGGT TTTGACACTG TTGTGCTACT

GGCAGCGGAA CACCGCGATG ACGTCAGCCC TACTTCTCTC TATTATGATG

TCAACGTTCA GGGTACCCGC AATGTGCTGG CGGCCATGGA AAAAAATGGC

GTTAAAAATA TCATCTTTAC CAGTTCCGTT GCTGTTTATG GTTTGAACAA

ACACAACCCT GACGAAAACC ATCCACACGA TCCTTTCAAC CACTACGGCA

AAAGTAAGTG GCAGGCAGAG GAAGTGCTGC GTGAATGGTA TAACAAAGCA

CCAACAGAAC GTTCATTAAC CATCATCCGT CCTACCGTTA TCTTCGGTGA

ACGGAACCGC GGTAACGTCT ATAACTTGCT GAAACAGATC GCTGGCGGCA

AGTTTATGAT GGTGGGCGCA GGGACTAACT ATAAGTCCAT GGCTTATGTT

GGAAACATTG TTGAGTTTAT CAAGTACAAA CTGAAGAATG TTGCCGCAGG

TTACGAGGTT TATAACTACG TTGATAAGCC AGACCTGAAC ATGAACCAGT

TGGTTGCTGA AGTTGAACAA AGCCTGAACA AAAAGATCCC TTCTATGCAC

TTGCCTTACC CACTAGGAAT GCTGGGTGGA TATTGCTTTG ATATCCTGAG

CAAAATTACG GGCAAAAAAT ACGCTGTCAG CTCTGTGCGC GTGAAAAAAT

TCTGCGCAAC AACACAGTTT GACGCAACGA NAGTGCATTC TTCAGGTTTT

GTGGCACCGT ATACGCTGTC GCAAGGTCTG GATCGAACTC TGCAGTATGA

ATTCGTCCAT GCCAAAAAAG ACGACATAAC GTTTGTTTCT GAG

Amino Acid Sequence for E. coli O55 UDP-GlcNAc 4-epimerase Gne

Locus AF461121_1

Definition (UDP-GlcNAc 4-epimerase Gne [Escherichia coli])

Accession AAL67550

Length: 331 aa linear

Type: PRT

Organism: E. coli O55

Sequence:

SEQ ID NO: 4

mndnvlliga sgfvgtrlle taiadfnikn ldkqqshfyp eitqigdvrd

qqaldqalag fdtvvllaae hrddvsptsl yydvnvqgtr nvlaamekng

vkniiftssv avyglnkhnp denhphdpfn hygkskwqae evirewynka

ptersltiir ptvifgernr gnvynllkqi aggkfmmvga gtnyksmayv

gnivefikyk lknvaagyev ynyvdkpdln mnqlvaeveq sinkkipsmh

lpyplgmlgg ycfdilskit gkkyayssvr vkkfcattqf datkvhssgf

vapytlsqgl drtlqyefvh akkdditfvs e

Nucleotide Sequence for E. coli O86 gne1

Locus AAO37706 BCT 6 Dec. 2005

Definition UDP-GlcNAc C4-epimerase [Escherichia coli O86].

Accession AAO37706

Length: 993

Type: DNA

Organism: E. coli O86

Sequence:

SEQ ID NO. 5

ATGAACGATA ACGTTTTGCT CATAGGAGCT TCCGGATTCG TAGGAACCCG

ACTACTTGAA ACGGCAATTG CTGACTTTAA TATCAAGAAC CTGGACAAAC

AGCAGAGCCA CTTTTATCCA GAAATCACAC AGATTGGTGA TGTTCGTGAT

CAACAGGCAC TCGACCAGGC GTTAGCCGGT TTTGACACTG TTGTACTACT

GGCAGCGGAA CACCGCGATG ACGTCAGCCC TACTTCTCTC TATTATGATG

TCAACGTTCA GGGTACCCGC AATGTGCTGG CGGCCATGGA AAAAAATGGC

GTTAAAAATA TCATCTTTAC CAGTTCCGTT GCTGTTTATG GTTTGAACAA

ACACAACCCT GACGAAAACC ATCCACACGA CCCTTTCAAC CACTACGGCA

AAAGCAAGTG GCAGGCGGAG GAAGTGCTGC GTGAATGGTA TAACAAAGCA

CCAACAGAAC GTTCATTAAC TATCATCCGT CCTACCGTTA TCTTCGGTGA

ACGCAACCGC GGTAACGTCT ATAACTTGCT GAAACAGATC GCTGGCGGCA

AGTTTATGAT GGTGGGCGCA GGGACTAACT ATAAGTCCAT GGCTTATGTT

GGAAACATTG TTGAGTTTAT CAAGTACAAA CTGAAGAATG TTGCCGCAGG

TTACGAGGTT TATAACTACG TTGATAAGCC AGACCTGAAC ATGAACCAGT

TGGTTGCTGA AGTTGAACAA AGCCTGAACA AAAAGATCCC TTCTATGCAC

TTGCCTTACC CACTAGGAAT GCTGGGTGGA TATTGCTTTG ATATCCTGAG

CAAAATTACG GGCAAAAAAT ACGCTGTCAG CTCTGTGCGC GTGAAAAAAT

TCTGCGCAAC AACACAGTTT GACGCAACGA AAGTGCATTC TTCAGGTTTT

GTGGCACCGT ATACGCTGTC GCAAGGTCTG GATCGAACTC TGCAGTATGA

ATTCGTCCAT GCCAAAAAAG ACGACATAAC GTTTGTTTCT GAG

Amino Acid Sequence for E. coli O86 UDP-GlcNAc C4-epimerase

Locus AA037706

Definition UDP-GlcNAc C4-epimerase [Escherichia coli O86].

Accession AAO37706

Length: 331 aa linear

Type: PRT

Organism: E. coli O86

Sequence:

SEQ ID NO: 6

mndnvlliga sgfvgtrlle taiadfnikn ldkqqshfyp eitqigdvrd

qqaldqalag fdtvvllaae hrddvsptsl yydvnvqgtr nvlaamekng

vkniiftssv avyglnkhnp denhphdpfn hygkskwqae evlrewynka

ptersltiir ptvifgernr gnvynllkqi aggkfmmvga gtnyksmayv

gnivefikyk lknvaagyev ynyvdkpdln mnqlvaeveq slnkkipsmh

lpyplgmlgg ycfdilskit gkkyayssvr vkkfcattqf datkvhssgf

vapytlsqgl drtlqyefvh akkdditfvs e

Nucleotide Sequence for Shigella boydii O18 gne

Locus ACD09753 BCT 5 May 2008

Definition UDP-N-acetylglucosamine 4-epimerase

[Shigella boydii CDC 3083-94].

Accession ACD09753

Length: 993

Type: DNA

Organism: Shigella boydii O18

Sequence:

SEQ ID NO: 7

ATGAACGATA ACGTTTTGCT CATAGGAGCT TCCGGATTCG TAGGAACCCG

ACTACTTGAA ACGGCAATTG CTGACTTTAA TATCAAGAAC CTGGACAAAC

AGCAGAGCCA TTTTTATCCA GCAATCACAC AGATTGGCGA TGTTCGTGAT

CAACAGGCAC TCGACCAGGC GTTAGCCGGT TTTGACACTG TTGTACTACT

GGCAGCGGAA CACCGCGATG ACGTCAGCCC TACTTCTCTC TATTATGATG

TCAACGTTCA GGGTACCCGC AATGTGCTGG CGGCCATGGA AAAAAATGGC

GTTAAAAATA TCATCTTTAC CAGTTCCGTT GCTGTTTATG GTTTGAACAA

ACACAACCCT GACGAAAACC ATCCACACGA CCCTTTCAAC CACTACGGCA

AAAGTAAGTG GCAGGCAGAG GAAGTGCTGC GTGAATGGTA TAACAAAGCA

CCAACAGAAC GTTCATTAAC CATCATCCGT CCTACCGTTA TCTTCGGTGA

ACGCAACCGC GGTAACGTCT ATAACTTGCT GAAACAGATC GCTGGCGGCA

AGTTTATGAT GGTGGGCGCA GGGACTAACT ATAAGTCCAT GGCTTATGTT

GGAAACATTG TTGAGTTTAT CAAGTACAAA CTGAAGAATG TTGCCGCAGG

TTATGAGGTT TATAACTATG TTGATAAGCC AGACCTGAAC ATGAACCAGT

TGGTTGCTGA AGTTGAACAA AGCCTGAACA AAAAGATCCC TTCTATGCAC

TTGCCTTACC CACTAGGAAT GCTGGGTGGA TATTGCTTTG ATATCCTGAG

CAAAATTACG GGCAAAAAAT ACGCTGTCAG CTCTGTGCGC GTGAAAAAAT

TCTGCGCAAC AACACAGTTT GACGCAACGA AAGTGCATTC TTCAGGTTTT

GTGGCACCGT ATACGCTGTC GCAAGGTCTG GATCGAACTC TGCAGTATGA

ATTCGTCCAT GCCAAAAAAG ACGACATAAC GTTTGTTTCT GAG

Amino Acid Sequence for Shigella boydii O18 UDP-N-

acetylglucosamine 4-epimerase

Locus ACD09753

Definition UDP-N-acetylglucosamine 4-epimerase

[Shigella boydii CDC 3083-94].

Accession ACD09753

Length: 331 aa linear

Type: PRT

Organism: Shigella boydii O18

Sequence:

SEQ ID NO: 8

mndnvlliga sgfvgtrile taiadfnikn ldkggshfyp aitqigdvrd

qqaldqalag fdtvvliaae hrddvsptsi yydvnvqgtr nvlaamekng

vkniiftssv avyglnkhnp denhphdpfn hygkskwqae evirewynka

ptersltiir ptvifgernr gnvynllkqi aggkfmmvga gtnyksmayv

gnivefikyk lknvaagyev ynyvdkpdln mnqlvaeveq sinkkipsmh

lpyplgmlgg ycfdilskit gkkyayssvr vkkfcattqf datkvhssgf

vapytlsggl drtlqyefvh akkdditfvs

Nucleotide Sequence for Salmonella enterica O30 gne

Locus AAV34516 BCT 25 Oct. 2004

Definition UDP-GlcNAc 4-epimerase

[Salmonella enterica subsp. salamae serovar Greenside].

Accession AAV34516

Length: 993

Type: DNA

Organism: Salmonella enterica O30

Sequence:

SEQ ID NO: 9

ATGAACGATA ACGTTTTGCT CATTGGTGCT TCCGGATTCG TAGGAACCCG

ACTCCTTGAA ACGGCAGTGG ATGATTTTAA TATCAAGAAC CTGGATAAAC

AGCAAAGCCA TTTCTACCCA GAGATTACAC ACATTGGCGA TGTTCGTGAC

CAACAAATCC TTGACCAGAC GTTGGTGGGT TTTGACACCG TAGTACTATT

GGCTGCGGAG CATCGTGATG ATGTTAGTCC TACCTCGCTT TATTATGATG

TCAACGTCCA GGGAACGCGT AATGTACTGG CGGCGATGGA AAAAAATGGT

GTAAAAAATA TCATTTTTAC CAGTTCCGTT GCAGTTTATG GACTCAACAA

GAAAAATCCT GACGAAACGC ACCCTCACGA TCCCTTTAAT CATTACGGAA

AAAGTAAATG GCAAGCAGAA GAAGTTCTGC GTGAGTGGCA TGCTAAAGCG

CCGAATGAGC GTTCTTTGAC CATAATTCGT CCTACCGTTA TTTTCGGGGA

GCGTAACCGC GGTAATGTAT ACAATCTCTT GAAACAGATC GCTGGTGGTA

AATTTGCGAT GGTTGGTCCG GGAACTAACT ATAAATCAAT GGCTTATGTT

GGTAATATCG TTGAGTTTAT CAAATTCAAA CTCAAGAATG TTACGGCGGG

CTATGAAGTT TATAATTATG TTGATAAACC TGATCTGAAT ATGAATCAAT

TGGTTGCTGA AGTAGAGCAG AGCCTGGGCA AAAAAATACC ATCGATGCAC

CTTCCATATC CATTAGGTAT GCTGGGGGGT TACTGTTTCG ATATCCTGAG

CAAAGTAACG GGCAAGAAGT ACGCTGTAAG TTCGGTTCGT GTTAAAAAAT

TCTGTGCGAC AACGCAGTTT GATGCAACAA AAGTGCATTC TTCTGGTTTT

GTTGCGCCAT ACACCTTATC TCAGGGGTTG GATCGTACAC TGCAATATGA

ATTTGTTCAT GCAAAGAAAG ATGACATTAC ATTCGTTTCA GAG

Amino Acid Sequence for Salmonella enterica O30 UDP-

GlcNAc 4-epimerase

Locus AAV34516

Definition UDP-GlcNAc 4-epimerase

[Salmonella enterica subsp. salamae serovar Greenside].

Accession AAV34516

Length: 331 aa linear

Type: PRT

Organism: Salmonella enterica O30

Sequence:

SEQ ID NO: 10

mndnviliga sgfvgtrlle tavddfnikn ldkggshfyp eithigdvrd

ggildgtivg fdtvvilaae hrddvsptsl yydvnvqgtr nvlaamekng

vkniiftssv avyglnkknp dethphdpfn hygkskwgae evlrewhaka

pnersltiir ptvifgernr gnvyralkgi aggkfamvgp gtnyksmayv

gnivefikfk lknvtagyev ynywdkpdln mnglvaeveg slgkkipsmh

lpyplgmlgg ycfdilskvt gkkyayssvr vkkfcattqf datkvhssgf

vapytlsggl drtlgyefvh akkdditfvs e

Nucleotide Sequence for C. jejuni gne

Locus YP_002344524 BCT 14 Sep. 2010

Definition UDP-GlcNAc/Glc 4-epimerase

[Campylobacter jejuni subsp. jejuni

Accession YP_002344524

Length: 987

Type: DNA

Organism: C. jejuni

Sequence:

SEQ ID NO: 11

ATGAAAATTCTTATTAGCGGTGGTGCAGGTTATATAGGTTCTCATACTTTAAGACAATT

TTTAAAAACAGATCATGAAATTTGTGTTTTAGATAATCTTTCTAAGGGTTCTAAAATCG

CAATAGAAGATTTGCAAAAAACAAGAGCTTTTAAATTTTTCGAACAAGATTTAAGTGAT

TTTCAAGGCGTAAAAGCATTGTTTGAGAGAGAAAAATTTGACGCTATTGTGCATTTTGC

AGCAAGCATTGAAGTTTTTGAAAGTATGCAAAATCCTTTAAAATATTATATGAACAACA

CTGTTAATACGACAAATCTCATCGAAACTTGTTTGCAAACTGGAGTGAATAAATTTATA

TTTTCTTCAACGGCGGCCACTTATGGCGAACCACAAACTCCCGTTGTGAGCGAAACAAG

TCCTTTAGCACCTATTAATCCTTATGGGCGTAGTAAGCTTATGAGTGAAGAAGTTTTGC

GTGATGCAAGTATGGCAAATCCTGAATTTAAGCATTGTATTTTAAGATATTTTAATGTT

GCAGGTGCTTGTATGGATTATACTTTAGGACAACGCTATCCAAAAGCGACTTTGCTTAT

AAAAGTTGCAGCTGAATGTGCCGCAGGAAAACGTGATAAACTTTTCATATTTGGCGATG

ATTATGATACAAAAGATGGTACTTGCATAAGAGATTTTATCCATGTAGATGATATTTCA

AGTGCACATTTAGCGGCTTTGGATTATTTAAAAGAGAATGAAAGCAATGTTTTTAATGT

AGGTTATGGACATGGTTTTAGCGTAAAAGAAGTGATTGAAGCGATGAAAAAAGTTAGCG

GAGTGGATTTTAAAGTAGAACTTGCCCCACGCCGTGCGGGTGATCCTAGTGTATTGATT

TCTGATGCAAGTAAAATCAGAAATCTTACTTCTTGGCAGCCTAAATATGATGATTTAGA

GCTTATTTGTAAATCTGCTTTTGATTGGGAAAAACAGTGTTAA

Amino Acid Sequence for C. jejuni UDP-GlcNAc/Glc 4-epimerase

Locus YP_002344524

Definition UDP-GlcNAc/Glc 4-epimerase

[Campylobacter jejuni subsp. jejuni

Accession YP_002344524

Length: 328 aa linear

Type: PRT

Organism: C. jejuni

Sequence:

SEQ ID NO: 12

mkilisggag yigshtlrqf lktdheicvl dnlskgskia iedlqktraf

kffeqdlsdf qgvkalfere kfdaivhfaa sievfesmqn plkyymnntv

nttnlietcl gtgvnkfifs staatygepq tpvvsetspl apinpygrsk

imseevirda smanpefkhc ilryfnvaga cmdytlaqry pkatllikva

aecaagkrdk ififgddydt kdgtcirdfi hvddissahi aaldylkene

snvfnvgygh gfsvkeviea mkkvsgvdfk velaprragd psvlisdask

irnltswqpk yddlelicks afdwekqc

Nucleotide Sequence for E. coli K12 galE

Locus AP_001390 BCT 30 Apr. 2010

Definition UDP-galactose-4-epimerase

[Escherichia coli str. K-12 substr. W3110].

Accession AP_001390

Length: 1,017

Type: DNA

Organism: E. coli K12

Sequence:

SEQ ID NO: 13

ATGAGAGTTCTGGTTACCGGTGGTAGCGGTTACATTGGAAGTCATACCTGTGTGCAA

TTACTGCAAAACGGTCATGATGTCATCATTCTTGATAACCTCTGTAACAGTAAGCGC

AGCGTACTGCCTGTTATCGAGCCTTTTAGGCGGCAAACATCCAACGTTTGTTGAAGG

CGATATTCGTAACGAAGCGTTGATGACCGAGATCCTGCACGATCACGCTATCGACAC

CGTGATCCACTTCGCCGGGCTGAAAGCCGTGGGCGAATCGGTACAAAAACCGCTGGA

ATATTACGACAACAATGTCAACGGCACTCTGCGCCTGATTAGCGCCATGCGCGCCGC

TAACGTCAAAAACTTTATTTTTAGCTCCTCCGCCACCGTTTATGGCGATCAGCCCAA

AATTCCATACGTTGAAAGCTTCCCGACCGGCACACCGCAAAGCCCTTACGGCAAAAG

CAAGCTGATGGTGGAACAGATCCTCACCGATCTGCAAAAAGCCCAGCCGGACTGGAG

CATTGCCCTGCTGCGCTACTTCAACCCGGTTGGCGCGCATCCGTCGGGCGATATGGG

CGAAGATCCGCAAGGCATTCCGAATAACCTGATGCCATACATCGCCCAGGTTGCTGT

AGGCCGTCGCGACTCGCTGGCGATTTTTGGTAACGATTATCCGACCGAAGATGGTAC

TGGCGTACGCGATTACATCCACGTAATGGATCTGGCGGACGGTCACGTCGTGGCGAT

GGAAAAACTGGCGAACAAGCCAGGCGTACACATCTACAACCTCGGCGCTGGCGTAGG

CAACAGCGTGCTGGACGTGGTTAATGCCTTCAGCAAAGCCTGCGGCAAACCGGTTAA

TTATCATTTTGCACCGCGTCGCGAGGGCGACCTTCCGGCCTACTGGGCGGACGCCAG

CAAAGCCGACCGTGAACTGAACTGGCGCGTAACGCGCACACTCGATGAAATGGCGCA

GGACACCTGGCACTGGCAGTCACGCCATCCACAGGGATATCCCGATTAA

Amino Acid Sequence for E. coli K12 UDP-galactose-4-epimerase

Locus AP_001390

Definition UDP-galactose-4-epimerase

[Escherichia coli str. K-12 substr. W3110].

Accession AP_001390

Length: 338 aa linear

Type: PRT

Organism: E. coli K12

Sequence:

SEQ ID NO: 14

mrvlvtqgsgyigshtcvqllqnghdviildnlcnskrsvlpvierlggkhptfvegdi

rnealmteilhdhaidtvihfaglkavgesvqkpleyydnnvngtlrlisamraanvkn

fifsssatvygdqpkipyvesfptgtpqspygksklmveqi1tdlqkaqpdwsiallry

fnpvgahpsgdmgedpqgipnnlmpyiaqvavgrrdslaifgndyptedgtgvrdyihv

mdladghvvameklankpgvhiynigagvgnsvldvvnafskacgkpvnyhfaprregd

lpaywadaskadrelnwrvtrtldemaqdtwhwqsrhpqgypd

Nucleotide Sequence for E. coli O86 gne2

Locus AAV85952 BCT 27 Mar. 2005

Definition Gne [Escherichia coli O86[.

Accession AAV85952

Length: 1,020

Type: DNA

Organism: E. coli O86

Sequence:

SEQ ID NO: 15

ATGGTGATTT TCGTAACAGG CGGTGCAGGA TATATTGGAT CCCATACCAT

ACTTGAGTTA CTTAATAATC GTCATGATGT CGTTTCGATA GATAATTTTG

TCAATTCCTC TATAGAATCA TTAAAAAGAC TAGAGCAAAT AACTAATAAG

AAAATTATTT CTTATCAAGG TGATATCCGT GATAAAAATC TACTTGATGA

GATTTTTTCA AGACACCATA TCCATGCTGT AATTCACTTT GCATCGTTAA

AATCTGTAGG TGAGTCTAAG TTAAAGCCCT TAGAGTATTA TTCTAATAAT

GTTGGTGGAA CTTTAGTATT ACTTCAATGC ATGAAGAGAT ATAACATTAA

TAAAATGATA TTTAGCTCTT CTGCTACTGT TTATGGGAGT AACAGTATCC

CTCCCCATAC GGAAGATAGA CGAATTGGTG AAACTACAAA CCCATATGGG

ACATCGAAAT TTATAATAGA AATAATTTTG AGTGATTATT GTGATAGTGA

TAATAATAAA TCAGTAATTG CACTGCGTTA CTTTAATCCA ATCGGAGCAC

ATAAGTCCGG GATGATTGGT GAAAATCCTA ACGGGATCCC TAATAATCTG

GTTCCTTATA TATCTAAAGT TGCACAAAAT CAACTTCCTG TATTAAATAT

TTATGGCAAC GATTATCCAA CTAAAGATGG TACAGGAGTA AGAGACTATA

TACATGTCTG TGATTTGGCT AAAGGGCATG TTAAAGCATT AGAATATATG

TTTTTAAATG ATGTCAATTA TGAAGCTTTT AATTTAGGTA CTGGTCAAGG

TTATTCTGTT TTAGAGATTG TAAAAATGTT TGAGATAGTC ACTAAAAAGA

GTATACCTGT TGCTATTTGT AATAGACGTG AGGGGGATGT TGCGGAGTCA

TGGGCGTCTG CTGATTTGGC ACATAAAAAG CTTTCCTGGA AAGCGCAAAA

AAATTTGAAA GAAATGATCG AAGATGTATG GCGTTGGCAA ACAAACAATC

CAAATGGATA TAAAAAATAA

Amino Acid Sequence for E. coli O86 Gne

Locus AAV85952

Definition Gne [Escherichia coli O86].

Accession AAV85952

Length: 339 aa (gne2) linear

Type: PRT

Organism: E. coli O86

Sequence:

SEQ ID NO: 16

mvifvtggag yigshtilel innghdvvsi dnfvnssies lkrvegitnk

kiisyggdir dknlldeifs rhhidavihf aslksvgesk lkpleyysnn

vgctivllec mkryninkmi fsssatvygs nsipphtedr rigettnpyg

tskfiieiil sdycdsdnnk svialryfnp igahksgmig enpngipnnl

vpyiskvaqn qlpviniygn dyptkdgtgv rdyihvcdla kghvkaleym

findvnyeaf nlgtgqgysv leivkmfeiv tkksipvaic nrregdvaes

wasadlahkk lswkaeknlk emiedvwrwq tnnpngykk

Nucleotide Sequence for synthetic oligonucleotide Z3206-

Fw (primer) encoding an end of Z3206; restriction sites underlined

Length: 30

Type: DNA

Sequence:

SEQ ID NO: 17

AAACCCGGGATGAACGATAACGTTTTGCTC

Nucleotide Sequence for synthetic oligonucleotide Z3206-

RvHA (primer) encoding an end of Z3206 with a hemoaglutinin

tag (HA tag); restriction sites underlined

Length: 60

Type: DNA

Organism:

Sequence:

SEQ ID NO: 18

AAATCTAGATTAAGCGTAATCTGGAACATCGTATGGGTACTCAGAAACAAACGTTATGTC

Nucleotide Sequence for synthetic oligonucleotide gne-Fw

(primer) with restriction sites underlined

Length: 29

Type: DNA

Organism:

Sequence:

SEQ ID NO: 19

AAACCATGGATGAAAATTCTTATTAGCGG

Nucleotide Sequence for synthetic oligonucleotide gne-RV

(primer) with restriction sites underlined

Length: 57

Type: DNA

Organism:

Sequence:

SEQ ID NO: 20

AAATCTAGATTAAGCGTAATCTGGAACATCGTATGGGTAGCACTGTTTTTCCCAATC

Nucleotide Sequence for oligonucleotide containing

restriction sites for NheI restriction enzyme

Length: 11

Type: DNA

Organism:

Sequence:

SEQ ID NO: 21

AAAAAGCTAGC

Nucleotide Sequence for oligonucleotide containing

restriction sites for AscI restriction enzyme

Length: 8

Type: DNA

Organism:

Sequence:

SEQ ID NO: 22

CCGCGCGG

Nucleotide Sequence for plasmid pMLBAD: Z3206 (E. coli O157

insert in plasmid) encoding Z3206 with a C-terminal hemagglutinin tag

Definition Ligation of product into Z3206-pMLBAD*

Features	Location/Qualifiers
CDS	2105..3098
	/label=Z3206
CDS	3098..3127
	/label=HA

Length: 7794 bp

Type: DNA circular UNA

Sequence:

SEQ ID NO: 23

1	TCTACGGGGT CTGACGCTCA GTGGAACGAA ATCGATGAGC TCGCACGAAC CCAGTTGACA

61	TAAGCCTGTT CGGTTCGTAA ACTGTAATGC AAGTAGCGTA TGCGCTCACG CAACTGGTCC

121	AGAACCTTGA CCGAACGCAG CGGTGGTAAC GGCGCAGTGG CGGTTTTCAT GGCTTGTTAT

181	GACTGTTTTT TTGTACAGTC TAGCCTCGGG CATCCAAGCT AGCTAAGCGC GTTACGCCGT

241	GGGTCGATGT TTGATGTTAT GGAACAGCAA CGATGTTACG CAGCAGGGTA GTCGCCCTAA

301	AACAAAGTTA GGCAGCCGTT GTGCTGGTGC TTTCTAGTAG TTGTTGTGGG GTAGGCAGTC

361	AGAGCTCGAT TTGCTTGTCG CCATAATAGA TTCACAAGAA GGATTCGACA TGGGTCAAAG

421	TAGCGATGAA GCCAACGCTC CCGTTGCAGG GCAGTTTGCG CTTCCCCTGA GTGCCACCTT

481	TGGCTTAGGG GATCGCGTAC GCAAGAAATC TGGTGCCGCT TGGCAGGGTC AAGTCGTCGG

541	TTGGTATTGC ACAAAACTCA CTCCTGAAGG CTATGCGGTC GAGTCCGAAT CCCACCCAGG

601	CTCAGTGCAA ATTTATCCTG TGGCTGCACT TGAACGTGTG GCCTAAGCGA TATCTTAGGA

661	TCTCCCATCG GTGATGTCGG CGATATAGGC GCCAGCAACC GCACCTGTGG CGCCGGTGAT

721	GCCGGCCACG ATGCGTCCGG CGTAGAGGAT CTGCTCATGT TTGACAGCTT ATCATCGATG

781	CATAATGTGC CTGTCAAATG GACGAAGCAG GGATTCTGCA AACCCTATGC TACTCCGTCA

841	AGCCGTCAAT TGTCTGAATC GTTACCAATT ATGACAACTT GACGGCTACA TCATTCACTT

901	TTTCTTCACA ACCGGCACGG AACTCGCTCG GGCTGGCCCC GGTGCATTTT TTAAATACCC

961	GCGAGAAATA GAGTTGATCG TCAAAACCAA CATTGCGACC GACGGTGGCG ATAGGCATCC

1021	GGGTGGTGCT CAAAAGCAGC TTCGCCTGGC TGATACGTTG GTCCTCGCGC CAGCTTAAGA

1081	CGCTAATCCC TAACTGCTGG CGGAAAAGAT GTGACAGACG CGACGGCGAC AAGCAAACAT

1141	GCTGTGCGAC GCTGGCGATA TCAAAATTGC TGTCTGCCAG GTGATCGCTG ATGTACTGAC

1201	AAGCCTCGCG TACCCGATTA TCCATCGGTG GATGGAGCGA CTCGTTAATC GCTTCCATGC

1261	GCCGCAGTAA CAATTGCTCA AGCAGATTTA TCGCCAGCAG CTCCGAATAG CGCCCTTCCC

1321	CTTGCCCGGC GTTAATGATT TGCCCAAACA GGTCGCTGAA ATGCGGCTGG TGCGCTTCAT

1381	CCGGGCGAAA GAACCCCGTA TTGGCAAATA TTGACGGCCA GTTAAGCCAT TCATGCCAGT

1441	AGGCGCGCGG ACGAAAGTAA ACCCACTGGT GATACCATTC GCGAGCCTCC GGATGACGAC

1501	CGTAGTGATG AATCTCTCCT GGCGGGAACA GCAAAATATC ACCCGGTCGG CAAACAAATT

1561	CTCGTCCCTG ATTTTTCACC ACCCCCTGAC CGCGAATGGT GAGATTGAGA ATATAACCTT

1621	TCATTCCCAG CGGTCGGTCG ATAAAAAAAT CGAGATAACC GTTGGCCTCA ATCGGCGTTA

1681	AACCCGCCAC CAGATGGGCA TTAAACGAGT ATCCCGGCAG CAGGGGATCA TTTTGCGCTT

1741	CAGCCATACT TTTCATACTC CCGCCATTCA GAGAAGAAAC CAATTGTCCA TATTGCATCA

1301	GACATTGCCG TCACTGCGTC TTTTACTGGC TCTTCTCGCT AACCAAACCG GTAACCCCGC

1861	TTATTAAAAG CATTCTGTAA CAAAGCGGGA CCAAAGCCAT GACAAAAACG CGTAACAAAA

1921	GTGTCTATAA TCACGGCAGA AAAGTCCACA TTGATTATTT GCACGGCGTC ACACTTTGCT

1981	ATGCCATAGC ATTTTTATCC ATAAGATTAG CGGATCCTAC CTGACGCTTT TTATCGCAAC

2041	TCTCTACTGT TTCTCCATAC CCGTTTTTTT GGGCTAGCAG GAGGAATTCA CCATGGTACC

2101	CGGGATGAAC GATAACGTTT TGCTCATAGG AGCTTCCGGA TTCGTAGGAA CCCGACTACT

2161	TGAAACGGCA ATTGCTGACT TTAATATCAA GAACCTGGAC AAACAGCAGA GCCACTTTTA

2221	TCCAGAAATC ACACAGATTG GCGATGTTCG CGATCAACAG GCACTCGACC AGGCGTTAGT

2281	CGGTTTTGAC ACTGTTGTAC TACTGGCAGC GGAACACCGC GATGACGTCA GCCCTACTTC

2341	TCTCTATTAT GATGTCAACG TTCAGGGTAC CCGCAATGTG CTGGCGGCCA TGGAAAAAAA

2401	TGGCGTTAAA AATATCATCT TTACCAGTTC CGTTGCTGTT TATGGTTTGA ACAAACACAA

2461	CCCTGACGAA AACCATCCAC ACGACCCTTT CAACCACTAC GGCAAAAGTA AGTGGCAGGC

2521	AGAGGAAGTG CTGCGTGAAT GGTATAACAA AGCACCAACA GAACGTTCAT TAACCATCAT

2581	CCGTCCTACC GTTATCTTCG GTGAACGCAA CCGCGGTAAC GTCTATAACT TGCTGAAACA

2641	GATCGCTGGC GGCAAGTTTA TGATGGTGGG CGCAGGGACT AACTATAAGT CCATGGCTTA

2701	TGTTGGAAAC ATTGTTGAGT TTATCAAGTA CAAACTGAAG AATGTTGCCG CAGGTTATGA

2761	GGTTTATAAC TACGTTGATA AGCCAGACCT GAACATGAAC CAGTTGGTTG CTGAAGTTGA

2821	ACAAAGCCTG AACAAAAAGA TCCCTTCTAT GCACTTGCCT TACCCACTAG GAATGCTGGG

2881	TGGATATTGC TTTGATATCC TGAGCAAAAT TACGGGCAAA AAATACGCTG TCAGCTCAGT

2941	GCGCGTGAAA AAATTCTGCG CAACAACACA GTTTGACGCA ACGAAAGTGC ATTCTTCAGG

3001	TTTTGTGGCA CCGTATACGC TGTCGCAAGG TCTGGATCGA ACACTGCAGT ATGAATTCGT

3061	TCATGCCAAA AAAGACGACA TAACGTTTGT TTCTGAGTAC CCATACGATG TTCCAGATTA

3121	CGCTTAATCT AGAGTCGACC TGCAGGCATG CAAGCTTGGC TGTTTTGGCG GATGAGAGAA

3181	GATTTTCAGC CTGATACAGA TTAAATCAGA ACGCAGAAGC GGTCTGATAA AACAGAATTT

3241	GCCTGGCGGC AGTAGCGCGG TGGTCCCACC TGACCCCATG CCGAACTCAG AAGTGAAACG

3301	CCGTAGCGCC GATGGTAGTG TGGGGTCTCC CCATGCGAGA GTAGGGAACT GCCAGGCATC

3361	AAATAAAACG AAAGGCTCAG TCGAAAGACT GGGCCTTTCG TTTTATCTGT TGTTTGTCGG

3421	TGAACGCTCT CCTGAGTAGG ACAAATCCGC CGGGAGCGGA TTTGAACGTT GCGAAGCAAC

3481	GGCCCGGAGG GTGGCGGGCA GGACGCCCGC CATAAACTGC CAGGCATCAA ATTAAGCAGA

3541	AGGCCATCCT GACGGATGGC CTTTTTGCGT TTCTACAAAC TCTTCCACTC ACTACAGCAG

3601	AGCCATTTAA ACAACATCCC CTCCCCCTTT CCACCGCGTC AGACGCCCGT AGCAGCCCGC

3661	TACGGGCTTT TTCATGCCCT GCCCTAGCGT CCAAGCCTCA CGGCCGCGCT CGGCCTCTCT

3721	GGCGGCCTTC TGGCGCTGAG GTCTGCCTCG TGAAGAAGGT GTTGCTGACT CATACCAGGC

3781	CTGAATCGCC CCATCATCCA GCCAGAAAGT GAGGGAGCCA CGGTTGATGA GAGCTTTGTT

3841	GTAGGTGGAC CAGTTGGTGA TTTTGAACTT TTGCTTTGCC ACGGAACGGT CTGCGTTGTC

3901	GGGAAGATGC GTGATCTGAT CCTTCAACTC AGCAAAAGTT CGATTTATTC AACAAAGCCG

3961	CCGTCCCGTC AAGTCAGCGT AATGCTCTGC CAGTGTTACA ACCAATTAAC CAATTCTGAT

4021	TAGAAAAACT CATCGAGCAT CAAATGAAAC TGCAATTTAT TCATATCAGG ATTATCAATA

4081	CCATATTTTT GAAAAAGCCG TTTCTGTAAT GAAGGAGAAA ACTCACCGAG GCAGTTCCAT

4141	AGGATGGCAA GATCCTGGTA TCGGTCTGCG ATTCCGACTC GTCCAACATC AATACAACCT

4201	ATTAATTTCC CCTCGTCAAA AATAAGGTTA TCAAGCGAGA AATCACCATG AGTGACGACT

4261	GAATCCGGTG AGAATGGCAA AAGCTAAAAA GGCCGTAATA TCCAGCTGAA CGGTCTGGTT

4321	ATAGGTACAT TGAGCAACTG ACTGAAATGC CTCAAAATGT TCTTTACGAT GCCATTGGGA

4381	TATATCAACG GTGGTATATC CAGTGATTTT TTTCTCCATT TTAGCTTCCT TAGCTCCTGA

4441	AAATCTCGAT AACTCAAAAA ATACGCCCGG TAGTGATCTT ATTTCATTAT GGTGAAAGTT

4501	GGAACCTCTT ACGTGCCGAT CAACGTCTCA TTTTCGCCAA AAGTTGGCCC AGGGCTTCCC

4561	GGTATCAACA GGGACACCAG GATTTATTTA TTCTGCGAAG TGATCTTCCG TCACAGGTAT

4621	TTATTCGAAG ACGAAAGGGC CTCGTGATAC GCCTATTTTT ATAGGTTAAT GTCATGATAA

4681	TAATGGTTTC TTAGACGTCA GGTGGCACTT TTCGGGGAAA TGTGCGCGCC CGCGTTCCTG

4741	CTGGCGCTGG GCCTGTTTCT GGCGCTGGAC TTCCCGCTGT TCCGTCAGCA GCTTTTCGCC

4801	CACGGCCTTG ATGATCGCGG CGGCCTTGGC CTGCATATCC CGATTCAACG GCCCCAGGGC

4861	GTCCAGAACG GGCTTCAGGC GCTCCCGAAG GTCTCGGGCC GTCTCTTGGG CTTGATCGGC

4921	CTTCTTGCGC ATCTCACGCG CTCCTGCGGC GGCCTGTAGG GCAGGCTCAT ACCCCTGCCG

4981	AACCGCTTTT GTCAGCCGGT CGGCCACGGC TTCCGGCGTC TCAACGCGCT TTGAGATTCC

5041	CAGCTTTTCG GCCAATCCCT GCGGTGCATA GGCGCGTGGC TCGACCGCTT GCGGGCTGAT

5101	GGTGACGTGG CCCACTGGTG GCCGCTCCAG GGCCTCGTAG AACGCCTGAA TGCGCGTGTG

5161	ACGTGCCTTG CTGCCCTCGA TGCCCCGTTG CAGCCCTAGA TCGGCCACAG CGGCCGCAAA

5221	CGTGGTCTGG TCGCGGGTCA TCTGCGCTTT GTTGCCGATG AACTCCTTGG CCGACAGCCT

5281	GCCGTCCTGC GTCAGCGGCA CCACGAACGC GGTCATGTGC GGGCTGGTTT CGTCACGGTG

5341	GATGCTGGCC GTCACGATGC GATCCGCCCC GTACTTGTCC GCCAGCCACT TGTGCGCCTT

5401	CTCGAAGAAC GCCGCCTGCT GTTCTTGGCT GGCCGACTTC CACCATTCCG GGCTGGCCGT

5461	CATGACGTAC TCGACCGCCA ACACAGCGTC CTTGCGCCGC TTCTCTGGCA GCAACTCGCG

5521	CAGTCGGCCC ATCGCTTCAT CGGTGCTGCT GGCCGCCCAG TGCTCGTTCT CTGGCGTCCT

5581	GCTGGCGTCA GCGTTGGGCG TCTCGCGCTC GCGGTAGGCG TGCTTGAGAC TGGCCGCCAC

5641	GTTGCCCATT TTCGCCAGCT TCTTGCATCG CATGATCGCG TATGCCGCCA TGCCTGCCCC

5701	TCCCTTTTGG TGTCCAACCG GCTCGACGGG GGCAGCGCAA GGCGGTGCCT CCGGCGGGCC

5761	ACTCAATGCT TGAGTATACT CACTAGACTT TGCTTCGCAA AGTCGTGACC GCCTACGGCG

5821	GCTGCGGCGC CCTACGGGCT TGCTCTCCGG GCTTCGCCCT GCGCGGTCGC TGCGCTCCCT

5881	TGCCAGCCCG TGGATATGTG GACGATGGCC GCGAGCGGCC ACCGGCTGGC TCGCTTCGCT

5941	CGGCCCGTGG ACAACCCTGC TGGACAAGCT GATGGACAGG CTGCGCCTGC CCACGAGCTT

6001	GACCACAGGG ATTGCCCACC GGCTACCCAG CCTTCGACCA CATACCCACC GGCTCCAACT

6061	GCGCGGCCTG CGGCCTTGCC CCATCAATTT TTTTAATTTT CTCTGGGGAA AAGCCTCCGG

6121	CCTGCGGCCT GCGCGCTTCG CTTGCCGGTT GGACACCAAG TGGAAGGCGG GTCAAGGCTC

6181	GCGCAGCGAC CGCGCAGCGG CTTGGCCTTG ACGCGCCTGG AACGACCCAA GCCTATGCGA

6241	GTGGGGGCAG TCGAAGGCGA AGCCCGCCCG CCTGCCCCCC GAGCCTCACG GCGGCGAGTG

6301	CGGGGGTTCC AAGGGGGCAG CGCCACCTTG GGCAAGGCCG AAGGCCGCGC AGTCGATCAA

6361	CAAGCCCCGG AGGGGCCACT TTTTGCCGGA GGGGGAGCCG CGCCGAAGGC GTGGGGGAAC

6421	CCCGCAGGGG TGCCCTTCTT TGGGCACCAA AGAACTAGAT ATAGGGCGAA ATGCGAAAGA

6481	CTTAAAAATC AACAACTTAA AAAAGGGGGG TACGCAACAG CTCATTGCGG CACCCCCCGC

6541	AATAGCTCAT TGCGTAGGTT AAAGAAAATC TGTAATTGAC TGCCACTTTT ACGCAACGCA

6601	TAATTGTTGT CGCGCTGCCG AAAAGTTGCA GCTGATTGCG CATGGTGCCG CAACCGTGCG

6661	GCACCCTACC GCATGGAGAT AAGCATGGCC ACGCAGTCCA GAGAAATCGG CATTCAAGCC

6721	AAGAACAAGC CCGGTCACTG GGTGCAAACG GAACGCAAAG CGCATGAGGC GTGGGCCGGG

6781	CTTATTGCGA GGAAACCCAC GGCGGCAATG CTGCTGCATC ACCTCGTGGC GCAGATGGGC

6841	CACCAGAACG CCGTGGTGGT CAGCCAGAAG ACACTTTCCA AGCTCATCGG ACGTTCTTTG

6901	CGGACGGTCC AATACGCAGT CAAGGACTTG GTGGCCGAGC GCTGGATCTC CGTCGTGAAG

6961	CTCAACGGCC CCGGCACCGT GTCGGCCTAC GTGGTCAATG ACCGCGTGGC GTGGGGCCAG

7021	CCCCGCGACC AGTTGCGCCT GTCGGTGTTC AGTGCCGCCG TGGTGGTTGA TCACGACGAC

7081	CAGGACGAAT CGCTGTTGGG GCATGGCGAC CTGCGCCGCA TCCCGACCCT GTATCCGGGC

7141	GAGCAGCAAC TACCGACCGG CCCCGGCGAG GAGCCGCCCA GCCAGCCCGG CATTCCGGGC

7201	ATGGAACCAG ACCTGCCAGC CTTGACCGAA ACGGAGGAAT GGGAACGGCG CGGGCAGCAG

7261	CGCCTGCCGA TGCCCGATGA GCCGTGTTTT CTGGACGATG GCGAGCCGTT GGAGCCGCCG

7321	ACACGGGTCA CGCTGCCGCG CCGGTAGCAC TTGGGTTGCG CAGCAACCCG TAAGTGCGCT

7381	GTTCCAGACT ATCGGCTGTA GCCGCCTCGC CGCCCTATAC CTTGTCTGCC TCCCCGCGTT

7441	GCGTCGCGGT GCATGGAGCC GGGCCACCTC GACCTGAATG GAAGCCGGCG GCACCTCGCT

7501	AACGGATTCA CCGTTTTTAT CAGGCTCTGG GAGGCAGAAT AAATGATCAT ATCGTCAATT

7561	ATTACCTCCA CGGGGAGAGC CTGAGCAAAC TGGCCTCAGG CATTTGAGAA GCACACGGTC

7621	ACACTGCTTC CGGTAGTCAA TAAACCGGTA AACCAGCAAT AGACATAAGC GGCTATTTAA

7681	CGACCCTGCC CTGAACCGAC GACCGGGTCG AATTTGCTTT CGAATTTCTG CCATTCATCC

7741	GCTTATTATC ACTTATTCAG GCGTAGCACC AGGCGTTTAA GTCGACCAAT AACC

Nucleotide Sequence for pMLBAD: gne (E. coli O157 insert

in plasmid) which encodes Gne with a C-terminal hemagglutinin tag

Locus gne-pMLBAD

Definition Ligation of dig galE into pmlbad did (NcoI-XbaI)

Features	Location/Qualifiers
CDS	2097..3080
	/label=galE
CDS	3081..3107
	/label=HA
Region	3108..3110
	/label=stop

Length: 7776 bp

Type: DNA circular UNA

Sequence:

SEQ ID NO: 24

1	TCTACGGGGT CTGACGCTCA GTGGAACGAA ATCGATGAGC TCGCACGAAC CCAGTTGACA

61	TAAGCCTGTT CGGTTCGTAA ACTGTAATGC AAGTAGCGTA TGCGCTCACG CAACTGGTCC

121	AGAACCTTGA CCGAACGCAG CGGTGGTAAC GGCGCAGTGG CGGTTTTCAT GGCTTGTTAT

181	GACTGTTTTT TTGTACAGTC TAGCCTCGGG CATCCAAGCT AGCTAAGCGC GTTACGCCGT

241	GGGTCGATGT TTGATGTTAT GGAACAGCAA CGATGTTACG CAGCAGGGTA GTCGCCCTAA

301	AACAAAGTTA GGCAGCCGTT GTGCTGGTGC TTTCTAGTAG TTGTTGTGGG GTAGGCAGTC

361	AGAGCTCGAT TTGCTTGTCG CCATAATAGA TTCACAAGAA GGATTCGACA TGGGTCAAAG

421	TAGCGATGAA GCCAACGCTC CCGTTGCAGG GCAGTTTGCG CTTCCCCTGA GTGCCACCTT

481	TGGCTTAGGG GATCGCGTAC GCAAGAAATC TGGTGCCGCT TGGCAGGGTC AAGTCGTCGG

541	TTGGTATTGC ACAAAACTCA CTCCTGAAGG CTATGCGGTC GAGTCCGAAT CCCACCCAGG

601	CTCAGTGCAA ATTTATCCTG TGGCTGCACT TGAACGTGTG GCCTAAGCGA TATCTTAGGA

661	TCTCCCATCG GTGATGTCGG CGATATAGGC GCCAGCAACC GCACCTGTGG CGCCGGTGAT

721	GCCGGCCACG ATGCGTCCGG CGTAGAGGAT CTGCTCATGT TTGACAGCTT ATCATCGATG

781	CATAATGTGC CTGTCAAATG GACGAAGCAG GGATTCTGCA AACCCTATGC TACTCCGTCA

841	AGCCGTCAAT TGTCTGATTC GTTACCAATT ATGACAACTT GACGGCTACA TCATTCACTT

901	TTTCTTCACA ACCGGCACGG AACTCGCTCG GGCTGGCCCC GGTGCATTTT TTAAATACCC

961	GCGAGAAATA GAGTTGATCG TCAAAACCAA CATTGCGACC GACGGTGGCG ATAGGCATCC

1021	GGGTGGTGCT CAAAAGCAGC TTCGCCTGGC TGATACGTTG GTCCTCGCGC CAGCTTAAGA

1081	CGCTAATCCC TAACTGCTGG CGGAAAAGAT GTGACAGACG CGACGGCGAC AAGCAAACAT

1141	GCTGTGCGAC GCTGGCGATA TCAAAATTGC TGTCTGCCAG GTGATCGCTG ATGTACTGAC

1201	AAGCCTCGCG TACCCGATTA TCCATCGGTG GATGGAGCGA CTCGTTAATC GCTTCCATGC

1261	GCCGCAGTAA CAATTGCTCA AGCAGATTTA TCGCCAGCAG CTCCGAATAG CGCCCTTCCC

1321	CTTGCCCGGC GTTAATGATT TGCCCAAACA GGTCGCTGAA ATGCGGCTGG TGCGCTTCAT

1381	CCGGGCGAAA GAACCCCGTA TTGGCAAATA TTGACGGCCA GTTAAGCCAT TCATGCCAGT

1441	AGGCGCGCGG ACGAAAGTAA ACCCACTGGT GATACCATTC GCGAGCCTCC GGATGACGAC

1501	CGTAGTGATG AATCTCTCCT GGCGGGAACA GCAAAATATC ACCCGGTCGG CAAACAAATT

1561	CTCGTCCCTG ATTTTTCACC ACCCCCTGAC CGCGAATGGT GAGATTGAGA ATATAACCTT

1621	TCATTCCCAG CGGTCGGTCG ATAAAAAAAT CGAGATAACC CTTGGCCTCA ATCGGCGTTA

1681	AACCCGCCAC CAGATGGGCA TTAAACGAGT ATCCCGGCAG CAGGGGATCA TTTTGCGCTT

1741	CAGCCATACT TTTCATACTC CCGCCATTCA GAGAAGAAAC CAATTGTCCA TATTGCATCA

1801	GACATTGCCG TCACTGCGTC TTTTACTGGC TCTTCTCGCT AACCAAACCG GTAACCCCGC

1861	TTATTAAAAG CATTCTGTAA CAAAGCGGGA CCAAAGCCAT GACAAAAACG CGTAACAAAA

1921	GTGTCTATAA TCACGGCAGA AAAGTCCACA TTGATTATTT GCACGGCGTC ACACTTTGCT

1981	ATGCCATAGC ATTTTTATCC ATAAGATTAG CGGATCCTAC CTGACGCTTT TTATCGCAAC

2041	TCTCTACTGT TTCTCCATAC CCGTTTTTTT GGGCTAGCAG GAGGAATTCA CCATGGATGA

2101	AAATTCTTAT TAGCGGTGGT GCAGGTTATA TAGGTTCTCA TACTTTAAGA CAATTTTTAA

2161	AAACAGATCA TGAAATTTGT GTTTTAGATA ATCTTTCTAA GGGTTCTAAA ATCGCAATAG

2221	AAGATTTGCA AAAAATAAGA ACTTTTAAAT TTTTTGAACA AGATTTAAGT GATTTTCAAG

2281	GCGTAAAAGC ATTGTTTGAG AGAGAAAAAT TTGACGCTAT TGTGCATTTT GCAGCGAGCA

2341	TTGAAGTTTT TGAAAGTATG CAAAACCCTT TAAAGTATTA TATGAATAAC ACTGTTAATA

2401	CGACAAATCT CATCGAAACT TGTTTGCAAA CTGGAGTGAA TAAATTTATA TTTTCTTCAA

2461	CGGCAGCCAC TTATGGCGAA CCACAAACTC CCGTTGTGAG CGAAACAAGT CCTTTAGCAC

2521	CTATTAATCC TTATGGGCGT AGTAAGCTTA TGAGCGAAGA GGTTTTGCGT GATGCAAGTA

2581	TGGCAAATCC TGAATTTAAG CATTGTATTT TAAGATATTT TAATGTTGCA GGTGCTTGCA

2641	TGGATTATAC TTTAGGACAA CGCTATCCAA AAGCGACTTT GCTTATAAAA GTTGCAGCTG

2701	AATGTGCCGC AGAAAAACGT AATAAACTTT TCATATTTGG CGATGATTAT GATACAAAAG

2761	ATGGCACTTG CATAAGAGAT TTTATCCATG TGGATGATAT TTCAAGTGCG CATTTATCGG

2821	CTTTGGATTA TTTAAAAGAG AATGAAAGCA ATGTTTTTAA TGTAGGTTAT GGACATGGTT

2881	TTAGCGTAAA AGAAGTGATT GAAGCGATGA AAAAAGTTAG CGGAGTGGAT TTTAAAGTAG

2941	AACTTGCCCC ACGCCGTGCG GGTGATCCTA GTGTATTGAT TTCTGATGCA AGTAAAATCA

3001	GAAATCTTAC TTCTTGGCAG CCTAAATATG ATGATTTAGG GCTTATTTGT AAATCTGCTT

3061	TTGATTGGGA AAAACAGTGC TACCCATACG ATGTTCCAGA TTACGCTTAA TCTAGAGTCG

3121	ACCTGCAGGC ATGCAAGCTT GGCTGTTTTG GCGGATGAGA GAAGATTTTC AGCCTGATAC

3181	AGATTAAATC AGAACGCAGA AGCGGTCTGA TAAAACAGAA TTTGCCTGGC GGCAGTAGCG

3241	CGGTGGTCCC ACCTGACCCC ATGCCGAACT CAGAAGTGAA ACGCCGTAGC GCCGATGGTA

3301	GTGTGGGGTC TCCCCATGCG AGAGTAGGGA ACTGCCAGGC ATCAAATAAA ACGAAAGGCT

3361	CAGTCGAAAG ACTGGGCCTT TCGTTTTATC TGTTGTTTGT CGGTGAACGC TCTCCTGAGT

3421	AGGACAAATC CGCCGGGAGC GGATTTGAAC GTTGCGAAGC AACGGCCCGG AGGGTGGCGG

3481	GCAGGACGCC CGCCATAAAC TGCCAGGCAT CAAATTAAGC AGAAGGCCAT CCTGACGGAT

3541	GGCCTTTTTG CGTTTCTACA AACTCTTCCA CTCACTACAG CAGAGCCATT TAAACAACAT

3601	CCCCTCCCCC TTTCCACCGC GTCAGACGCC CGTAGCAGCC CGCTACGGGC TTTTTCATGC

3661	CCTGCCCTAG CGTCCAAGCC TCACGGCCGC GCTCGGCCTC TCTGGCGGCC TTCTGGCGCT

3721	GAGGTCTGCC TCGTGAAGAA GGTGTTGCTG ACTCATACCA GGCCTGAATC GCCCCATCAT

3781	CCAGCCAGAA AGTGAGGGAG CCACGGTTGA TGAGAGCTTT GTTGTAGGTG GACCAGTTGG

3841	TGATTTTGAA CTTTTGCTTT GCCACGGAAC GGTCTGCGTT GTCGGGAAGA TGCGTGATCT

3901	GATCCTTCAA CTCAGCAAAA GTTCGATTTA TTCAACAAAG CCGCCGTCCC GTCAAGTCAG

3961	CGTAATGCTC TGCCAGTGTT ACAACCAATT AACCAATTCT GATTAGAAAA ACTCATCGAG

4021	CATCAAATGA AACTGCAATT TATTCATATC AGGATTATCA ATACCATATT TTTGAAAAAG

4081	CCGTTTCTGT AATGAAGGAG AAAACTCACC GAGGCAGTTC CATAGGATGG CAAGATCCTG

4141	GTATCGGTCT GCGATTCCGA CTCGTCCAAC ATCAATACAA CCTATTAATT TCCCCTCGTC

4201	AAAAATAAGG TTATCAAGCG AGAAATCACC ATGAGTGACG ACTGAATCCG GTGAGAATGG

4261	CAAAAGCTAA AAAGGCCGTA ATATCCAGCT GAACGGTCTG GTTATAGGTA CATTGAGCAA

4321	CTGACTGAAA TGCCTCAAAA TGTTCTTTAC GATGCCATTG GGATATATCA ACGGTGGTAT

4381	ATCCAGTGAT TTTTTTCTCC ATTTTAGCTT CCTTAGCTCC TGAAAATCTC GATAACTCAA

4441	AAAATACGCC CGGTAGTGAT CTTATTTCAT TATGGTGAAA GTTGGAACCT CTTACGTGCC

4501	GATCAACGTC TCATTTTCGC CAAAAGTTGG CCCAGGGCTT CCCGGTATCA ACAGGGACAC

4561	CAGGATTTAT TTATTCTGCG AAGTGATCTT CCGTCACAGG TATTTATTCG AAGACGAAAG

4621	GGCCTCGTGA TACGCCTATT TTTATAGGTT AATGTCATGA TAATAATGGT TTCTTAGACG

4681	TCAGGTGGCA CTTTTCGGGG AAATGTGCGC GCCCGCGTTC CTGCTGGCGC TGGGCCTGTT

4741	TCTGGCGCTG GACTTCCCGC TGTTCCGTCA GCAGCTTTTC GCCCACGGCC TTGATGATCG

4801	CGGCGGCCTT GGCCTGCATA TCCCGATTCA ACGGCCCCAG GGCGTCCAGA ACGGGCTTCA

4861	GGCGCTCCCG AAGGTCTCGG GCCGTCTCTT GGGCTTGATC GGCCTTCTTG CGCATCTCAC

4921	GCGCTCCTGC GGCGGCCTGT AGGGCAGGCT CATACCCCTG CCGAACCGCT TTTGTCAGCC

4981	GGTCGGCCAC GGCTTCCGGC GTCTCAACGC GCTTTGAGAT TCCCAGCTTT TCGGCCAATC

5041	CCTGCGGTGC ATAGGCGCGT GGCTCGACCG CTTGCGGGCT GATGGTGACG TGGCCCACTG

5101	GTGGCCGCTC CAGGGCCTCG TAGAACGCCT GAATGCGCGT GTGACGTGCC TTGCTGCCCT

5161	CGATGCCCCG TTGCAGCCCT AGATCGGCCA CAGCGGCCGC AAACGTGGTC TGGTCGCGGG

5221	TCATCTGCGC TTTGTTGCCG ATGAACTCCT TGGCCGACAG CCTGCCGTCC TGCGTCAGCG

5281	GCACCACGAA CGCGGTCATG TGCGGGCTGG TTTCGTCACG GTGGATGCTG GCCGTCACGA

5341	TGCGATCCGC CCCGTACTTG TCCGCCAGCC ACTTGTGCGC CTTCTCGAAG AACGCCGCCT

5401	GCTGTTCTTG GCTGGCCGAC TTCCACCATT CCGGGCTGGC CGTCATGACG TACTCGACCG

5461	CCAACACAGC GTCCTTGCGC CGCTTCTCTG GCAGCAACTC GCGCAGTCGG CCCATCGCTT

5521	CATCGGTGCT GCTGGCCGCC CAGTGCTCGT TCTCTGGCGT CCTGCTGGCG TCAGCGTTGG

5581	GCGTCTCGCG CTCGCGGTAG GCGTGCTTGA GACTGGCCGC CACGTTGCCC ATTTTCGCCA

5641	GCTTCTTGCA TCGCATGATC GCGTATGCCG CCATGCCTGC CCCTCCCTTT TGGTGTCCAA

5701	CCGGCTCGAC GGGGGCAGCG CAAGGCGGTG CCTCCGGCGG GCCACTCAAT GCTTGAGTAT

5761	ACTCACTAGA CTTTGCTTCG CAAAGTCGTG ACCGCCTACG GCGGCTGCGG CGCCCTACGG

5821	GCTTGCTCTC CGGGCTTCGC CCTGCGCGGT CGCTGCGCTC CCTTGCCAGC CCGTGGATAT

5881	GTGGACGATG GCCGCGAGCG GCCACCGGCT GGCTCGCTTC GCTCGGCCCG TGGACAACCC

5941	TGCTGGACAA GCTGATGGAC AGGCTGCGCC TGCCCACGAG CTTGACCACA GGGATTGCCC

6001	ACCGGCTACC CAGCCTTCGA CCACATACCC ACCGGCTCCA ACTGCGCGGC CTGCGGCCTT

6061	GCCCCATCAA TTTTTTTAAT TTTCTCTGGG GAAAAGCCTC CGGCCTGCGG CCTGCGCGCT

6121	TCGCTTGCCG GTTGGACACC AAGTGGAAGG CGGGTCAAGG CTCGCGCAGC GACCGCGCAG

6181	CGGCTTGGCC TTGACGCGCC TGGAACGACC CAAGCCTATG CGAGTGGGGG CAGTCGAAGG

6241	CGAAGCCCGC CCGCCTGCCC CCCGAGCCTC ACGGCGGCGA GTGCGGGGGT TCCAAGGGGG

6301	CAGCGCCACC TTGGGCAAGG CCGAAGGCCG CGCAGTCGAT CAACAAGCCC CGGAGGGGCC

6361	ACTTTTTGCC GGAGGGGGAG CCGCGCCGAA GGCGTGGGGG AACCCCGCAG GGGTGCCCTT

6421	CTTTGGGCAC CAAAGAACTA GATATAGGGC GAAATGCGAA AGACTTAAAA ATCAACAACT

6481	TAAAAAAGGG GGGTACGCAA CAGCTCATTG CGGCACCCCC CGCAATAGCT CATTGCGTAG

6541	GTTAAAGAAA ATCTGTAATT GACTGCCACT TTTACGCAAC GCATAATTGT TGTCGCGCTG

6601	CCGAAAAGTT GCAGCTGATT GCGCATGGTG CCGCAACCGT GCGGCACCCT ACCGCATGGA

6661	GATAAGCATG GCCACGCAGT CCAGAGAAAT CGGCATTCAA GCCAAGAACA AGCCCGGTCA

6721	CTGGGTGCAA ACGGAACGCA AAGCGCATGA GGCGTGGGCC GGGCTTATTG CGAGGAAACC

6781	CACGGCGGCA ATGCTGCTGC ATCACCTCGT GGCGCAGATG GGCCACCAGA ACGCCGTGGT

6841	GGTCAGCCAG AAGACACTTT CCAAGCTCAT CGGACGTTCT TTGCGGACGG TCCAATACGC

6901	AGTCAAGGAC TTGGTGGCCG AGCGCTGGAT CTCCGTCGTG AAGCTCAACG GCCCCGGCAC

6961	CGTGTCGGCC TACGTGGTCA ATGACCGCGT GGCGTGGGGC CAGCCCCGCG ACCAGTTGCG

7021	CCTGTCGGTG TTCAGTGCCG CCGTGGTGGT TGATCACGAC GACCAGGACG AATCGCTGTT

7081	GGGGCATGGC GACCTGCGCC GCATCCCGAC CCTGTATCCG GGCGAGCAGC AACTACCGAC

7141	CGGCCCCGGC GAGGAGCCGC CCAGCCAGCC CGGCATTCCG GGCATGGAAC CAGACCTGCC

7201	AGCCTTGACC GAAACGGAGG AATGGGAACG GCGCGGGCAG CAGCGCCTGC CGATGCCCGA

7261	TGAGCCGTGT TTTCTGGACG ATGGCGAGCC GTTGGAGCCG CCGACACGGG TCACGCTGCC

7321	GCGCCGGTAG CACTTGGGTT GCGCAGCAAC CCGTAAGTGC GCTGTTCCAG ACTATCGGCT

7381	GTAGCCGCCT CGCCGCCCTA TACCTTGTCT GCCTCCCCGC GTTGCGTCGC GGTGCATGGA

7441	GCCGGGCCAC CTCGACCTGA ATGGAAGCCG GCGGCACCTC GCTAACGGAT TCACCGTTTT

7501	TATCAGGCTC TGGGAGGCAG AATAAATGAT CATATCGTCA ATTATTACCT CCACGGGGAG

7561	AGCCTGAGCA AACTGGCCTC AGGCATTTGA GAAGCACACG GTCACACTGC TTCCGGTAGT

7621	CAATAAACCG GTAAACCAGC AATAGACATA AGCGGCTATT TAACGACCCT GCCCTGAACC

7681	GACGACCGGG TcGAATrTGc ETTCGAATTT CTGCCATTCA TCCGCTTATT ATCACTTATT

7741	CAGGCGTAGC ACCAGGCGTT TAAGTCGACC AATAAC

Amino Acid Sequence for modified EPA with signal sequence
Disclosed in WO 2009/104074 (as SEQ ID NO. 6)
Type: PRT
Organism: Artificial
/note=“Description of Artificial Sequence: Synthetic polypeptide”
Length: 643
Sequence:
SEQ ID NO: 25
Met Lys Lys Ile Trp Leu Ala Leu Ala Gly Leu Val Leu Ala Phe Ser
1 5 10 15

Ala Ser Ala Ala Glu Glu Ala Phe Asp Leu Trp Asn Glu Cys Ala Lys
20 25 30

Ala Cys Val Leu Asp Leu Lys Asp Gly Val Arg Ser Ser Arg Met Ser
35 40 45

Val Asp Pro Ala Ile Ala Asp Thr Asn Gly Gin Gly Val Leu His Tyr
50 55 60

Ser Met Val Leu Glu Gly Gly Asn Asp Ala Leu Lys Leu Ala Ile Asp
65 70 75 80

Asn Ala Leu Ser Ile Thr Ser Asp Gly Leu Thr Ile Arg Leu Glu Gly
85 90 95

Gly Val Glu Pro Asn Lys Pro Val Arg Tyr Ser Tyr Thr Arg Gin Ala
100 105 110

Arg Gly Ser Trp Ser Leu Asn Trp Leu Val Pro Ile Gly His Glu Lys
115 120 125

Pro Ser Asn Ile Lys Val Phe Ile His Glu Leu Asn Ala Gly Asn Gin
130 135 140

Leu Ser His Met Ser Pro Ile Tyr Thr Ile Glu Met Gly Asp Glu Leu
145 150 155 160

Leu Ala Lys Leu Ala Arg Asp Ala Thr Phe Phe Val Arg Ala His Glu
165 170 175

Ser Asn Glu Met Gln Pro Thr Leu Ala Ile Ser His Ala Gly Val Ser
180 185 190

Val Val Met Ala Gln Ala Gln Pro Arg Arg Glu Lys Arg Trp Ser Glu
195 200 205

Trp Ala Ser Gly Lys Val Leu Cys Leu Leu Asp Pro Leu Asp Gly Val
210 215 220

Tyr Asn Tyr Leu Ala Gln Gln Arg Cys Asn Leu Asp Asp Thr Trp Glu
225 230 235 240

Gly Lys Ile Tyr Arg Val Leu Ala Gly Asn Pro Ala Lys His Asp Leu
245 250 255

Asp Ile Lys Asp Asn Asn Asn Ser Thr Pro Thr Val Ile Ser His Arg
260 265 270

Leu His Phe Pro Glu Gly Gly Ser Leu Ala Ala Leu Thr Ala His Gln
275 280 285

Ala Cys His Leu Pro Leu Glu Ala Phe Thr Arg His Arg Gln Pro Arg
290 295 300

Gly Trp Glu Gln Leu Glu Gln Cys Gly Tyr Pro Val Gln Arg Leu Val
305 310 315 320

Ala Leu Tyr Leu Ala Ala Arg Leu Ser Trp Asn Gin Val Asp Gln Val
325 330 335

Ile Arg Asn Ala Leu Ala Ser Pro Gly Ser Gly Gly Asp Leu Gly Glu
340 345 350

Ala Ile Arg Glu Gln Pre Glu Gln Ala Arg Leu Ala Leu Thr Leu Ala
355 360 365

Ala Ala Glu Ser Glu Arg Phe Val Arg Gln Gly Thr Gly Asn Asp Glu
370 375 380

Ala Gly Ala Ala Ser Ala Asp Val Val Ser Leu Thr Cys Pro Val Ala
385 390 395 400

Lys Asp Gln Asn Arg Thr Lys Gly Glu Cys Ala Gly Pro Ala Asp Ser
405 410 415

Gly Asp Ala Leu Leu Glu Arg Asn Tyr Pro Thr Gly Ala Glu Phe Leu
420 425 430

Gly Asp Gly Gly Asp Val Ser Phe Ser Thr Arg Gly Thr Gln Asn Trp
435 440 445

Thr Val Glu Arg Leu Leu Gln Ala His Arg Gln Leu Glu Glu Arg Gly
450 455 460

Tyr Val Phe Val Gly Tyr His Gly Thr Phe Leu Glu Ala Ala Gln Ser
465 470 475 480

Ile Val Phe Gly Gly Val Arg Ala Arg Ser Gln Asp Leu Asp Ala Ile
485 490 495

Trp Arg Gly Phe Tyr Ile Ala Gly Asp Pro Ala Leu Ala Tyr Gly Tyr
500 505 510

Ala Gln Asp Gln Glu Pro Asp Ala Arg Gly Arg Ile Arg Asn Gly Ala
515 520 525

Leu Leu Arg Val Tyr Val Pro Arg Trp Ser Leu Pro Gly Phe Tyr Arg
530 535 540

Thr Gly Leu Thr Leu Ala Ala Pro Glu Ala Ala Gly Glu Val Glu Arg
545 550 555 560

Leu Ile Gly His Pro Leu Pro Leu Arg Leu Asp Ala Ile Thr Gly Pro
565 570 575

Glu Glu Glu Gly Gly Arg Val Thr Ile Leu Gly Trp Pro Leu Ala Glu
580 585 590

Arg Thr Val Val Ile Pro Ser Ala Ile Pro Thr Asp Pro Arg Asn Val
595 600 605

Gly Gly Asp Leu Asp Pro Ser Ser Ile Pro Asp Lys Glu Gln Ala Ile
610 615 620

Ser Ala Leu Pro Asp Tyr Ala Ser Gin Pro Gly Lys Pro Pro Arg Glu
625 630 635 640

Asp Leu Lys

Amino Acid Sequence for PglB
Disclosed in WO 2009/104074 (as SEQ ID NO. 2)
Length: 722
Type: PRT
Organism: Campylobacter jejuni
Sequence:
SEQ ID NO: 26
Met Leu Lys Lys Glu Tyr Leu Lys Asn Pro Tyr Leu Val Leu Phe Ala
1 5 10 15

Met Ile TIe Leu Ala Tyr Val Phe Ser Val Phe Cys Arg Phe Tyr Trp
20 25 30

Val Trp Trp Ala Ser Glu Phe Asn Glu Tyr Phe Phe Asn Asn Gln Leu
35 40 45

Met Ile Ile Ser Asn Asp Gly Tyr Ala Phe Ala Glu Gly Ala Arg Asp
50 55 60

Met Ile Ala Gly Phe His Gln Pro Asn Asp Leu Ser Tyr Tyr Gly Ser
65 70 75 80

Ser Leu Ser Ala Leu Thr Tyr Trp Leu Tyr Lys Ile Thr Pro Phe Ser
85 90 95

Phe Glu Ser Ile Ile Leu Tyr Met Ser Thr Phe Leu Ser Ser Leu Val
100 105 110

Val Ile Pro Thr Ile Leu Leu Ala Asn Glu Tyr Lys Arg Pro Leu Met
115 120 125

Gly Phe Val Ala Ala Leu Leu Ala Ser Ile Ala Asn Ser Tyr Tyr Asn
130 135 140

Arg Thr Met Ser Gly Tyr Tyr Asp Thr Asp Met Leu Val Ile Val Leu
145 150 155 160

Pro Met Phe Ile Leu Phe Phe Met Val Arg Met Ile Leu Lys Lys Asp
165 170 175

Phe Phe Ser Leu Ile Ala Leu Pro Leu Phe Ile Gly Ile Tyr Leu Trp
180 185 190

Trp Tyr Pro Ser Ser Tyr Thr Leu Asn Val Ala Leu Ile Gly Leu Phe
195 200 205

Leu Ile Tyr Thr Leu Ile Phe His Arg Lys Glu Lys Ile Phe Tyr Ile
210 215 220

Ala Val Ile Leu Ser Ser Leu Thr Leu Ser Asn Ile Ala Trp Phe Tyr
225 230 235 240

Gln Ser Ala Ile Ile Val Ile Leu Phe Ala Leu Phe Ala Leu Glu Gln
245 250 255

Lys Arg Leu Asn Phe Met Ile Ile Gly Ile Leu Gly Ser Ala Thr Leu
260 265 270

Ile Phe Leu Ile Leu Ser Gly Gly Val Asp Pro Ile Leu Tyr Gln Leu
275 280 285

Lys Phe Tyr Ile Phe Arg Ser Asp Glu Ser Ala Asn Leu Thr Gln Gly
290 295 300

Phe Met Tyr Phe Asn Val Asn Gln Thr Ile Gln Glu Val Glu Asn Val
305 310 315 320

Asp Leu Ser Glu Phe Met Arg Arg Ile Ser Gly Ser Glu Ile Val Phe
325 330 335

Leu Phe Ser Leu Phe Gly Phe Val Trp Leu Leu Arg Lys His Lys Ser
340 345 350

Met Ile Met Ala Leu Pro Ile Leu Val Leu Gly Phe Leu Ala Leu Lys
355 360 365

Gly Gly Leu Arg Phe Thr Ile Tyr Ser Val Pro Val Met Ala Leu Gly
370 375 380

Phe Gly Phe Leu Leu Ser Glu Phe Lys Ala Ile Met Val Lys Lys Tyr
385 390 395 400

Ser Gln Leu Thr Ser Asn Val Cys Ile Val Phe Ala Thr Ile Leu Thr
405 410 415

Leu Ala Pro Val Phe Ile His Ile Tyr Asn Tyr Lys Ala Pro Thr Val
420 425 430

Phe Ser Gln Asn Glu Ala Ser Leu Leu Asn Gln Leu Lys Asn Ile Ala
435 440 445

Asn Arg Glu Asp Tyr Val Val Thr Trp Ala Ala Tyr Gly Tyr Pro Val
450 455 460

Arg Tyr Tyr Ser Asp Val Lys Thr Leu Val Asp Gly Gly Lys His Leu
465 470 475 480

Gly Lys Asp Asn Phe Phe Pro Ser Phe Ala Leu Ser Lys Asp Glu Gln
485 490 495

Ala Ala Ala Asn Met Ala Arg Leu Ser Val Glu Tyr Thr Glu Lys Ser
500 505 510

Phe Tyr Ala Pro Gln Asn Asp Ile Leu Lys Thr Asp Ile Leu Gln Ala
515 520 525

Met Met Lys Asp Tyr Asn Gln Ser Asn Val Asp Leu Phe Leu Ala Ser
530 535 540

Leu Ser Lys Pro Asp Phe Lys Ile Asp Thr Pro Lys Thr Arg Asp Ile
545 550 555 560

Tyr Leu Tyr Met Pro Ala Arg Met Ser Leu Ile Phe Ser Thr Val Ala
565 570 575

Ser Phe Ser Phe Ile Asn Leu Asp Thr Gly Val Leu Asp Lys Pro Phe
580 585 590

Thr Phe Ser Thr Ala Tyr Pro Leu Asp Val Lys Asn Gly Glu Ile Tyr
595 600 605

Leu Ser Asn Gly Val Val Leu Ser Asp Asp Phe Arg Ser Phe Lys Ile
610 615 620

Gly Asp Asn Val Val Ser Val Asn Ser Ile Val Glu Ile Asn Ser Ile
625 630 635 640

Lys Gln Gly Glu Tyr Lys Ile Thr Pro Ile Asp Asp Lys Ala Gln Phe
645 650 555

Tyr Ile Phe Tyr Leu Lys Asp Ser Ala Ile Pro Tyr Ala Gln Phe Ile
660 665 670

Leu Met Asp Lys Thr Met Phe Asn Ser Ala Tyr Val Gln Met Phe Phe
675 680 685

Leu Gly Asn Tyr Asp Lys Asn Leu Phe Asp Leu Val Ile Asn Ser Arg
690 695 700

Asp Ala Lys Val Phe Lys Leu Lys Ile Tyr Pro Tyr Asp Val Pro Asp
705 710 715 720

Tyr Ala

Nucleotide Sequence for pCC1FOS Empty plasmid
Locus pCC1FOS with MCS cassette

Features	Location/Qualifiers
Region	230..256
	/label=“pCC1/pEpiFOS fwd”
Region	311..330
	/label=“T7 promoter”
Region	complement(504..529)
	/label=“pCC1pEpiFOS rv”
CDS	complement(805..1464)
	/label=cat
CDS	1683..2030
	/label=redF
CDS	3425..4180
	/label=repE
CDS	4759..5934
	/label=parA
CDS	5934..6905
	/label=parB

ORIGIN

Length: 8171 bp

Type: DNA circular TNA

Organism: Artificial

Sequence:

SEQ ID NO: 27

1	GCGGCCGCAA GGGGTTCGCG TCAGCGGGTG TTGGCGGGTG TCGGGGCTGG CTTAACTATG

61	CGGCATCAGA GCAGATTGTA CTGAGAGTGC ACCATATGCG GTGTGAAATA CCGCACAGAT

121	GCGTAAGGAG AAAATACCGC ATCAGGCGCC ATTCGCCATT CAGCTGCGCA ACTGTTGGGA

181	AGGGCGATCG GTGCGGGCCT CTTCGCTATT ACGCCAGCTG GCGAAAGGGG GATGTGCTGC

241	AAGGCGATTA AGTTGGGTAA CGCCAGGGTT TTCCCAGTCA CGACGTTGTA AAACGACGGC

301	CAGTGAATTG TAATACGACT CACTATAGGG CGAATTCGAG CTCGGTACCC GGGGATCCCA

361	CGTGGCGCGC CACTAGTGCT AGCGACGTCG TGGGATCCTC TAGAGTCGAC CTGCAGGCAT

421	GCAAGCTTGA GTATTCTATA GTCTCACCTA AATAGCTTGG CGTAATCATG GTCATAGCTG

481	TTTCCTGTGT GAAATTGTTA TCCGCTCACA ATTCCACACA ACATACGAGC CGGAAGCATA

541	AAGTGTAAAG CCTGGGGTGC CTAATGAGTG AGCTAACTCA CATTAATTGC GTTGCGCTCA

601	CTGCCCGCTT TCCAGTCGGG AAACCTGTCG TGCCAGCTGC ATTAATGAAT CGGCCAACGC

661	GAACCCCTTG CGGCCGCCCG GGCCGTCGAC CAATTCTCAT GTTTGACAGC TTATCATCGA

721	ATTTCTGCCA TTCATCCGCT TATTATCACT TATTCAGGCG TAGCAACCAG GCGTTTAAGG

781	GCACCAATAA CTGCCTTAAA AAAATTACGC CCCGCCCTGC CACTCATCGC AGTACTGTTG

841	TAATTCATTA AGCATTCTGC CGACATGGAA GCCATCACAA ACGGCATGAT GAACCTGAAT

901	CGCCAGCGGC ATCAGCACCT TGTCGCCTTG CGTATAATAT TTGCCCATGG TGAAAACGGG

961	GGCGAAGAAG TTOTCCATAT TGGCCACGTT TAAATCAAAA CTGGTGAAAC TCACCCAGGG

1021	ATTGGCTGAG ACGAAAAACA TATTCTCAAT AAACCCTTTA GGGAAATAGG CCAGGTTTTC

1081	ACCGTAACAC GCCACATCTT GCGAATATAT GTGTAGAAAC TGCCGGAAAT CGTCGTGGTA

1141	TTCACTCCAG AGCGATGAAA ACGTTTCAGT TTGCTCATGG AAAACGGTGT AACAAGGGTG

1201	AACACTATCC CATATCACCA GCTCACCGTC TTTCATTGCC ATACGAAATT CCGGATGAGC

1261	ATTCATCAGG CGGGCAAGAA TGTGAATAAA GGCCGGATAA AACTTGTGCT TATTTTTCTT

1321	TACGGTCTTT AAAAAGGCCG TAATATCCAG CTGAACGGTC TGGTTATAGG TACATTGAGC

1381	AACTGACTGA AATGCCTCAA AATGTTCTTT ACGATGCCAT TGGGATATAT CAACGGTGGT

1441	ATATCCAGTG ATTTTTTTCT CCATTTTAGC TTCCTTAGCT CCTGAAAATC TCGATAACTC

1501	AAAAAATACG CCCGGTAGTG ATCTTATTTC ATTATGGTGA AAGTTGGAAC CTCTTACGTG

1561	CCGATCAACG TCTCATTTTC GCCAAAAGTT GGCCCAGGGC TTCCCGGTAT CAACAGGGAC

1621	ACCAGGATTT ATTTATTCTG CGAAGTGATC TTCCGTCACA GGTATTTATT CGCGATAAGC

1681	TCATGGAGCG GCGTAACCGT CGCACAGGAA GGACAGAGAA AGCGCGGATC TGGGAAGTGA

1741	CGGACAGAAC GGTCAGGACC TGGATTGGGG AGGCGGTTGC CGCCGCTGCT GCTGACGGTG

1801	TGACGTTCTC TGTTCCGGTC ACACCACATA CGTTCCGCCA TTCCTATGCG ATGCACATGC

1861	TGTATGCCGG TATACCGCTG AAAGTTCTGC AAAGCCTGAT GGGACATAAG TCCATCAGTT

1921	CAACGGAAGT CTACACGAAG GTTTTTGCGC TGGATGTGGC TGCCCGGCAC CGGGTGCAGT

1981	TTGCGATGCC GGAGTCTGAT GCGGTTGCGA TGCTGAAACA ATTATCCTGA GAATAAATGC

2041	CTTGGCCTTT ATATGGAAAT GTGGAACTGA GTGGATATGC TGTTTTTGTC TGTTAAACAG

2101	AGAAGCTGGC TGTTATCCAC TGAGAAGCGA ACGAAACAGT CGGGAAAATC TCCCATTATC

2161	GTAGAGATCC GCATTATTAA TCTCAGGAGC CTGTGTAGCG TTTATAGGAA GTAGTGTTCT

2221	GTCATGATGC CTGCAAGCGG TAACGAAAAC GATTTGAATA TGCCTTCAGG AACAATAGAA

2281	ATCTTCGTGC CGTGTTACGT TGAAGTGGAG CGGATTATGT CAGCAATGGA CAGAACAACC

2341	TAATGAACAC AGAACCATGA TGTGGTCTGT CCTTTTACAG CCAGTAGTGC TCGCCGCAGT

2401	CGAGCGACAG GGCGAAGCCC TCGGCTGGTT GCCCTCGCCG CTGGGCTGGC GGCCGTCTAT

2461	GGCCCTGCAA ACGCGCCAGA AACGCCGTCG AAGCCGTGTG CGAGACACCG CGGCCGGCCG

2521	CCGGCGTTGT GGATACCTCG CGGAAAACTT GGCCCTCACT GACAGATGAG GGGCGGACGT

2581	TGACACTTGA GGGGCCGACT CACCCGGCGC GGCGTTGACA GATGAGGGGC AGGCTCGATT

2641	TCGGCCGGCG ACGTGGAGCT GGCCAGCCTC GCAAATCGGC GAAAACGCCT GATTTTACGC

2701	GAGTTTCCCA CAGATGATGT GGACAAGCCT GGGGATAAGT GCCCTGCGGT ATTGACACTT

2761	GAGGGGCGCG ACTACTGACA GATGAGGGGC GCGATCCTTG ACACTTGAGG GGCAGAGTGC

2821	TGACAGATGA GGGGCGCACC TATTGACATT TGAGGGGCTG TCCACAGGCA GAAAATCCAG

2881	CATTTGCAAG GGTTTCCGCC CGTTTTTCGG CCACCGCTAA CCTGTCTTTT AACCTGCTTT

2941	TAAACCAATA TTTATAAACC TTGTTTTTAA CCAGGGCTGC GCCCTGTGCG CGTGACCGCG

3001	CACGCCGAAG GGGGGTGCCC CCCCTTCTCG AACCCTCCCG GTCGAGTGAG CGAGGAAGCA

3061	CCAGGGAACA GCACTTATAT ATTCTGCTTA CACACGATGC CTGAAAAAAC TTCCCTTGGG

3121	GTTATCCACT TATCCACGGG GATATTTTTA TAATTATTTT TTTTATAGTT TTTAGATCTT

3181	CTTTTTTAGA GCGCCTTGTA GGCCTTTATC CATGCTGGTT CTAGAGAAGG TGTTGTGACA

3241	AATTGCCCTT TCAGTGTGAC AAATCACCCT CAAATGACAG TCCTGTCTGT GACAAATTGC

3301	CCTTAACCCT GTGACAAATT GCCCTCAGAA GAAGCTGTTT TTTCACAAAG TTATCCCTGC

3361	TTATTGACTC TTTTTTATTT AGTGTGACAA TCTAAAAACT TGTCACACTT CACATGGATC

3421	TGTCATGGCG GAAACAGCGG TTATCAATCA CAAGAAACGT AAAAATAGCC CGCGAATCGT

3481	CCAGTCAAAC GACCTCACTG AGGCGGCATA TAGTCTCTCC CGGGATCAAA AACGTATGCT

3541	GTATCTGTTC GTTGACCAGA TCAGAAAATC TGATGGCACC CTACAGGAAC ATGACGGTAT

3601	CTGCGAGATC CATGTTGCTA AATATGCTGA AATATTCGGA TTGACCTCTG COGAAGCCAG

3661	TAAGGATATA CGGCAGGCAT TGAAGAGTTT CGCGGGGAAG GAAGTGGTTT TTTATCGCCC

3721	TGAACAGGAT GCCGGCGATG AAAAAGGCTA TGAATCTTTT CCTTGGTTTA TCAAACGTGC

3781	GCACAGTCCA TCCAGAGGGC TTTACAGTGT ACATATCAAC CCATATCTCA TTCCCTTCTT

3841	TATCGGGTTA CAGAACCGGT TTACGCAGTT CGGCTTAGTG GAAACAAAAG AAATCACCAA

3901	TCCGTATCCC ATGCGTTTAT ACGAATCCCT GTGTCAGTAT CGTAAGCCGG ATGGCTCAGG

3961	CATCGTCTCT CTGAAAATCG ACTGGATCAT AGAGCGTTAC CAGCTGCCTC AAAGTTACCA

4021	GCGTATGCCT GACTTCCGCC GCCGCTTCCT GCAGGTCTGT GTTAATGAGA TCAACAGCAG

4081	AACTCCAATG CGCCTCTCAT ACATTGAGAA AAAGAAAGGC CGCCAGACGA CTCATATCGT

4141	ATTTTCCTTC CGCGATATCA CTTCCATGAC GACAGGATAG TCTGAGGGTT ATCTGTCACA

4201	GATTTGAGGG TGGTTCGTCA CATTTGTTCT GACCTACTGA GGGTAATTTG TCACAGTTTT

4261	GCTGTTTCCT TCAGCCTGCA TGGATTTTCT CATACTTTTT GAACTGTAAT TTTTAAGGAA

4321	GCCAAATTTG AGGGCAGTTT GTCACAGTTG ATTTCCTTCT CTTTCCCTTC GTCATGTGAC

4381	CTGATATCGG GGGTTAGTTC GTCATCATTG ATGAGGGTTG ATTATCACAG TTTATTACTC

4441	TGAATTGGCT ATCCGCGTGT GTACCTCTAC CTGGAGTTTT TCCCACGGTG GATATTTCTT

4501	CTTGCGCTGA GCGTAAGAGC TATCTGACAG AACAGTTCTT CTTTGCTTCC TCGCCAGTTC

4561	GCTCGCTATG CTCGGTTACA CGGCTGCGGC GAGCGCTAGT GATAATAAGT GACTGAGGTA

4621	TGTGCTCTTC TTATCTCCTT TTGTAGTGTT GCTCTTATTT TAAACAACTT TGCGGTTTTT

4681	TGATGACTTT GCGATTTTGT TGTTGCTTTG CAGTAAATTG CAAGATTTAA TAAAAAAACG

4741	CAAAGCAATG ATTAAAGGAT GTTCAGAATG AAACTCATGG AAACACTTAA CCAGTGCATA

4801	AACGCTGGTC ATGAAATGAC GAAGGCTATC GCCATTGCAC AGTTTAATGA TGACAGCCCG

4861	GAAGCGAGGA AAATAACCCG GCGCTGGAGA ATAGGTGAAG CAGCGGATTT AGTTGGGGTT

4921	TCTTCTCAGG CTATCAGAGA TGCCGAGAAA GCAGGGCGAC TACCGCACCC GGATATGGAA

4981	ATTCGAGGAC GGGTTGAGCA ACGTGTTGGT TATACAATTG AACAAATTAA TCATATGCGT

5041	GATGTGTTTG GTACGCGATT GCGACGTGCT GAAGACGTAT TTCCACCGGT GATCGGGGTT

5101	GCTGCCCATA AAGGTGGCGT TTACAAAACC TCAGTTTCTG TTCATCTTGC TCAGGATCTG

5161	GCTCTGAAGG GGCTACGTGT TTTGCTCGTG GAAGGTAACG ACCCCCAGGG AACAGCCTCA

5221	ATGTATCACG GATGGGTACC AGATCTTCAT ATTCATGCAG AAGACACTCT CCTGCCTTTC

5281	TATCTTGGGG AAAAGGACGA TGTCACTTAT GCAATAAAGC CCACTTGCTG GCCGGGGCTT

5341	GACATTATTC CTTCCTGTCT GGCTCTGCAC CGTATTGAAA CTGAGTTAAT GGGCAAATTT

5401	GATGAAGGTA AACTGCCCAC CGATCCACAC CTGATGCTCC GACTGGCCAT TGAAACTCTT

5461	GCTCATGACT ATGATGTCAT AGTTATTGAC AGCGCGCCTA ACCTGGGTAT CGGCACGATT

5521	AATGTCGTAT GTGCTGCTGA TGTGCTGATT GTTCCCACGC CTGCTGAGTT GTTTGACTAC

5581	ACCTCCGCAC TGCAGTTTTT CGATATGCTT CGTGATCTGC TCAAGAACGT TGATCTTAAA

5641	GGGTTCGAGC CTGATGTACG TATTTTGCTT ACCAAATACA GCAATAGTAA TGGCTCTCAG

5701	TCCCCGTGGA TGGAGGAGCA AATTCGGGAT GCCTGGGGAA GCATGGTTCT AAAAAATGTT

5761	GTACGTGAAA CGGATGAAGT TGGTAAAGGT CAGATCCGGA TGAGAACTGT TTTTGAACAG

5821	GCCATTGATC AACGCTCTTC AACTGGTGCC TGGAGAAATG CTCTTTCTAT TTGGGAACCT

5881	GTCTGCAATG AAATTTTCGA TCGTCTGATT AAACCACGCT GGGAGATTAG ATAATGAAGC

5941	GTGCGCCTGT TATTCCAAAA CATACGCTCA ATACTCAACC GGTTGAAGAT ACTTCGTTAT

6001	CGACACCAGC TGCCCCGATG GTGGATTCGT TAATTGCGCG CGTAGGAGTA ATGGCTCGCG

6061	GTAATGCCAT TACTTTGCCT GTATGTGGTC GGGATGTGAA GTTTACTCTT GAAGTGCTCC

6121	GGGGTGATAG TGTTGAGAAG ACCTCTCGGG TATGGTCAGG TAATGAACGT GACCAGGAGC

6181	TGCTTACTGA GGACGCACTG GATGATCTCA TCCCTTCTTT TCTACTGACT GGTCAACAGA

6241	CACCGGCGTT CGGTCGAAGA GTATCTGGTG TCATAGAAAT TGCCGATGGG AGTCGCCGTC

6301	GTAAAGCTGC TGCACTTACC GAAAGTGATT ATCGTGTTCT GGTTGGCGAG CTGGATGATG

6361	AGCAGATGGC TGCATTATCC AGATTGGGTA ACGATTATCG CCCAACAAGT GCTTATGAAC

6421	GTGGTCAGCG TTATGCAAGC CGATTGCAGA ATGAATTTGC TGGAAATATT TCTGCGCTGG

6481	CTGATGCGGA AAATATTTCA CGTAAGATTA TTACCCGCTG TATCAACACC GCCAAATTGC

6541	CTAAATCAGT TGTTGCTCTT TTTTCTCACC CCGGTGAACT ATCTGCCCGG TCAGGTGATG

6601	CACTTCAAAA AGCCTTTACA GATAAAGAGG AATTACTTAA GCAGCAGGCA TCTAACCTTC

6661	ATGAGCAGAA AAAAGCTGGG GTGATATTTG AAGCTGAAGA AGTTATCACT CTTTTAACTT

6721	CTGTGCTTAA AACGTCATCT GCATCAAGAA CTAGTTTAAG CTCACGACAT CACTTTGCTC

6781	CTGGAGCGAC AGTATTGTAT AAGGGCCATA AAATGGTGCT TAACCTGGAC AGGTCTCGTG

6841	TTCCAACTGA GTGTATAGAG AAAATTGAGG CCATTCTTAA GGAACTTGAA AAGCCAGCAC

6901	CCTGATGCGA CCACGTTTTA GTTTACTTTT ATCTGTCTTT ACTTAATGTC CTTTGTTACA

6961	GGCCAGAAAG CATAACTGGC CTGAATATTC TCTCTGGGCC CACTGTTCCA CTTGTATCGT

7021	CGGTCTGATA ATCAGACTGG GACCACGGTC CCACTCGTAT CGTCGGTCTG ATTATTAGTC

7081	TGGGACCACG GTCCCACTCG TATCGTCGGT CTGATTATTA GTCTGGGACC ACGGTCCCAC

7141	TCGTATCGTC GGTCTGATAA TCAGACTGGG ACCACGGTCC CACTCGTATC GTCGGTCTGA

7201	TTATTAGTCT GGGACCATGG TCCCACTCGT ATCGTCGGTC TGATTATTAG TCTGGGACCA

7261	CGGTCCCACT CGTATCGTCG GTCTGATTAT TAGTCTGGAA CCACGGTCCC ACTCGTATCG

7321	TCGGTCTGAT TATTAGTCTG GGACCACGGT CCCACTCGTA TCGTCGGTCT GATTATTAGT

7381	CTGGGACCAC GATCCCACTC GTGTTGTCGG TCTGATTATC GGTCTGGGAC CACGGTCCCA

7441	CTTGTATTGT CGATCAGACT ATCAGCGTGA GACTACGATT CCATCAATGC CTGTCAAGGG

7501	CAAGTATTGA CATGTCGTCG TAACCTGTAG AACGGAGTAA CCTCGGTGTG CGGTTGTATG

7561	CCTGCTGTGG ATTGCTGCTG TGTCCTGCTT ATCCACAACA TTTTGCGCAC GGTTATGTGG

7621	ACAAAATACC TGGTTACCCA GGCCGTGCCG CCACGTTAAC CGGGCTGCAT CCGATGCAAG

7681	TGTGTCGCTG TCGACGAGCT CGCGAGCTCG GACATGAGGT TGCCCCGTAT TCAGTGTCGC

7741	TGATTTGTAT TGTCTGAAGT TGTTTTTACG TTAAGTTGAT GCAGATCAAT TAATACGATA

7801	CCTGCGTCAT AATTGATTAT TTGACGTGGT TTGATGGCCT CCACGCACGT TGTGATATGT

7861	AGATGATAAT CATTATCACT TTACGGGTCC TTTCCGGTGA TCCGACAGGT TACGGGGCGG

7921	CGACCTCGCG GGTTTTCGCT ATTTATGAAA ATTTTCCGGT TTAAGGCGTT TCCGTTCTTC

7981	TTCGTCATAA CTTAATGTTT TTATTTAAAA TACCCTCTGA AAAGAAAGGA AACGACAGGT

8041	GCTGAAAGCG AGCTTTTTGG CCTCTGTCGT TTCCTTTCTC TGTTTTTGTC CGTGGAATGA

8101	ACAATGGAAG TCCGAGCTCA TCGCTAATAA CTTCGTATAG CATACATTAT ACGAAGTTAT

8161	ATTCGATCCA C

Nucleotide Sequence for pCC1FOS cut (pFOS) and

S. flexneri 6 O-antigen without Z3206

Locus pFOS cut and O-antige cut (-Z3206)

Definition Ligation of inverted pCC1FOS with MCS cassette cut with

NheI and into S. flexneri 6 O antigen cluster amplified with

galFNheI and wzzAscI cut with NheI and AscI

FEATURES	Location/Qualifiers
CDS	3..411
	/label=′galF
CDS	784..1869
	/label=rmlB
CDS	1869..2768
	/label=rmlD
CDS	2826..3704
	/label=rmlA
CDS	3709..4266
	/label=rmlC
CDS	4263..5495
	/label=wzx
CDS	5551..6738
	/label=wzy
CDS	6755..7624
	/label=wfbY
CDS	7621..8454
	/label=wfbZ
CDS	8559..9965
	/label=gnd
CDS	10187..11380
	/label=ugd
CDS	complement(11416..12450)
	/label=uge
CDS	12802..12828
	/label=wzz′
Region	complement(12868..12887)
	/label=“T7 promoter”
Region	complement(12942..12968)
	/label=“pCC1/pEpiRDS fwd”
CDS	complement(14460..15431)
	/label=parB
CDS	complement(15431..16606)
	/label=parA
CDS	complement(7185..17940)
	/label=repE
CDS	complement(19335..19682)
	/label=redF
CDS	19901..20560
	/label=cat
Region	20836..20861
	/label=“pCC1pEpiFOS rv”

Length: 20982 bp

Type: DNA circular UNA

Sequence:

SEQ ID NO: 28

1	CTAGCGGCAA AACGTATGCC GGGTGACCTC TCTGAATACT CCGTCATCCA GACCAAAGAA

61	CCGCTGGATC GCGAAGGTAA AGTCAGCCGC ATTGTTGAAT TTATCGAAAA ACCGGATCAG

121	CCGCAGACGC TGGACTCAGA CATCATGGCC GTTGGTCGCT ATGTGCTTTC TGCCGATATT

181	TGGCCGGAAC TTGAACGTAC TCAGCCTGGT GCATGGGGAC GTATTCAGCT GACTGATGCC

241	ATTGCCGAGC TGGCGAAAAA ACAGTCCGTT GATGCAATGC TGATGACCGG CGACAGCTAC

301	GACTGCGGTA AAAAAATGGG CTATATGCAG GCGTTTGTGA AGTATGGGCT GCGCAACCTG

361	AAAGAAGGGG CGAAGTTCCG TAAAGGTATT GAGAAGCTGT TAAGCGAATA ATGAAAATCT

421	GACCGGATGT AACGGTTGAT AAGAAAATTA TAACGGCAGT GAAGATTCGT GGTGAAAGTA

481	ATTTGTTGCG AATATTCCTG CCGTTGTTTT ATATAAACAA TCAGAATAAC AACGAGTTAG

541	CAATAGGATT TTAGTCAAAG TTTTCCAGGA TTTTCCTTGT TTCCAGAGCG GATTGGTAAG

601	ACAATTAGCT TTTGAATTTT TCGGGTTTAG CGCGAGTGGG TAACGCTCGT CACATCGTAG

661	GCATGCATGC AGTGCTCTGG TAGCTGTAAA GCCAGGGGCG GTAGCGTGCA TTAATACTTC

721	TATTAATCAA ACTGAGAGCC GCTTATTTCA CAGCATGCTC TGAAGCAATA TGGAATAAAT

781	TAGGTGAAAA TACTTGTTAC TGGTGGCGCA GGATTTATTG GTTTTGCTGT AGTTCGTCAC

841	ATTATAAATA ATACGCAGGA TAGTGTTGTT AATGTCGATA AATTAACGTA CGCCGGAAAC

901	CTGGAATCAC TTGCTGATGT TTCTGATTCT GAACGCTATG TTTTTGAACA TGCGGATATT

961	TGCGATGCAG CTGCAATGGC ACGGATTTTT GCTCAGCATC AGCCAGATGC AGTGATGCAC

1021	CTGGCTGCTG AAAGCCATGT TGACCGTTCA ATTACAGGTC CTGCGGCATT TATTGAAACC

1081	AATATTGTTG GTACATATGT CCTTTTGGAA GCCGCTCGCA ATTATTGGTC TGCTCTTGAT

1141	AGCGACAAGA AAACTAGATT CCGTTTTCAT CATATTTCTA CTGACGAAGT CTATGGTGAT

1201	TTGCCTCATC CTGACGAGGT AAATAATACA GAAGAATTAC CCTTATTTAC AGAGACAACA

1261	GCTTACGCGC CAAGCAGCCC TTATTCCGCT TCAAAAGCAT CCAGCGATCA TTTAGTCCGC

1321	GCGTGGAAAC GTACCTATGG TTTACCAACC ATTGTGACTA ATTGCTCTAA TAATTATGGT

1381	CCTTATCATT TCCCGGAAAA ATTGATTCCA TTGGTTATTC TGAATGCTCT GGAAGGTAAG

1441	GCATTACCTA TTTATGGCAA AGGGGATCAA ATTCGTGACT GGCTGTATGT TGAAGATCAT

1501	GCGCGTGCGT TATATACCGT CGTAACCGAA GGTAAAGCGG GTGAAACTTA TAACATTGGT

1561	GGACACAACG AAAAGAAAAA CATCGATGTA GTGCTCACTA TTTGTGATTT GCTGGATGAG

1621	ATTGTACCGA AAGAGAAATC TTACCGCGAG CAAATTACTT ATGTTGCCGA TCGCCCGGGA

1681	CACGATCGCC GTTATGCGAT TGATGCAGAG AAGATTAGCC GCGAATTGGG CTGGAAACCG

1741	CAGGAAACGT TTGAGAGCGG GATTCGGAAG ACATTGGAAT GGTACCTGTC CAATACAAAA

1801	TGGGTTGATA ATGTGAAAAG TGGTGCTTAT CAATCGTGGA TTGAACAGAA CTATGAGGGC

1861	CGCCAGTAAT GAATATCCTC CTTTTCGGCA AAACAGGGCA GGTAGGTTGG GAACTACAGC

1921	GTGCTCTGGC ACCTTTGGGT AATTTGATTG CTCTTGATGT TCACTCCACT GATTATTGTG

1981	GTGATTTTAG TAATCCTGAA GGTGTAGCTG AAACAGTCAA AAGAATTCGA CCTGATGTTA

2041	TTGTTAATGC TGCGGCTCAC ACCGCAGTAG ATAAGGCTGA GTCAGAACCC GAATTTGCAC

2101	AATTACTCAA TGCGACTAGT GTTGAATCAA TTGCAAAAGA GGCTAATGAA GTTGGGGCTT

2161	GGGTAATTCA TTACTCAACT GACTACGTAT TCCCTGGAAA TGGCGACACG CCATGGCTGG

2221	AGACGGATGC AACCGCACCG CTAAATGTTT ACGGTGAAAC CAAGTTAGCC GGAGAAAAAG

2281	CGTTACAGGA ACATTGCGCG AAGCATCTTA TTTTCCGTAC CAGCTGGGTA TACGCAGCTA

2341	AAGGAAATAA CTTCGCCAAA ACGATGTTGC GTCTGGCAAA AGAGCGCGAA GAACTGGCTG

2401	TGATAAATGA TCAATTTGGT GCGCCAACAG GTGCTGAGCT GCTGGCTGAT TGTACGGCAC

2461	ATGCTATTCG TGTGGCACTG AATAAACCGG AAGTCGCAGG TTTGTACCAT CTGGTAGCCA

2521	GTGGTACCAC AACCTGGCAC GATTATGCTG CGCTGGTTTT TGAAGAGGCG CGCAAAGCAG

2581	GTATTCCCCT TGCACTCAAC AAGCTCAACG CAGTACCAAC AACAGCCTAT CCTACACCAG

2641	CTCGTCGTCC ACATAACTCT CGCCTTAATA CAGAAAAATT TCAGCAGAAC TTTGCGCTTG

2701	TCTTGCCTGA CTGGCAGGTT GGTGTGAAAC GAATGCTCAA CGAATTAATT ACGACTACAG

2761	CAATTTAATA GTTTTTGCAT CTTGTTCGTG ATGGTGGAGC AAGATGAATT AAAAGGAATG

2821	ATGAAATGAA AACGCGTAAA GGTATTATTT TAGCGGGTGG TTCTGGTACA CGTCTTTATC

2881	CTGTGACTAT GGCTGTCAGT AAACAGCTAT TACCTATTTA TGATAAGCCG ATGATCTATT

2941	ACCCGCTCTC TACACTGATG TTGGCGGGTA TTCGCGATAT TCTGATTATT AGTACGCCAC

3001	AGGATACTCC TCGTTTTCAA CAACTGCTAG GTGACGGTAG CCAGTGGGGG CTAAATCTTC

3061	AGTACAAAGT GCAACCGACT CCAGATGGGC TTGCGCAGGC GTTTATTATC GGTGAAGAGT

3121	TTATCGGTGG TGATGATTGT GCTTTGGTTC TTGGTGATAA TATCTTCTAC GGTCATGATC

3181	TGCCGAAGTT AATGGATGTC GCTGTTAACA AAGAAAGTGG TGCAACGGTA TTTGCCTATC

3241	ACGTTAATGA TCCTGAACGC TACGGCGTCG TTGAGTTTGA TAAAAACGGT ACGGCAATAA

3301	GCCTGGAAGA AAAACCGCTA CAACCAAAAA GTAATTATGC GGTAACCGGG CTTTATTTCT

3361	ATGATAACGA CGTTGTCGAA ATGGCGAAAA ACCTTAAGCC TTCTGCCCGT GGTGAACTGG

3421	AAATTACCGA TATTAACCGT ATTTATATGG AACAGGGGCG TTTATCCGTT GCCATGATGG

3481	GGCGTGGTTA TGCATGGCTG GATACGGGGA CACATCAGAG TCTTATTGAA GCAAGCAACT

3541	TCATTGCCAC CATTGAAGAG CGCCAGGGAC TAAAGGTTTC CTGCCCAGAA GAAATTGCTT

3601	ACCGTAAAGG GTTTATTGAT GCTGAACAGG TGAAAGCATT AGCGGAGCCG CTGAAAAAAA

3661	ATGCTTATGG ACAGTATCTG CTGAAAATGA TTAAAGGTTA TTAATAAAAT GAACGTAATT

3721	AAAACAGAAA TTCCTGATGT GTTAATTTTC GAGCCGAAAG TTTTTGGTGA TGAGCGTGGT

3781	TTCTTTATGG AAAGCTTTAA TCAGAAAGTT TTCGAAGAAG CTGTAGGACG TAAGGTTGAA

3841	TTTGTTCAGG ATAACCATTC GAAGTCTAGT AAAGGTGTTT TACGCGGGCT GCATTATCAG

3901	TTAGAACCTT ATGCGCAAGG GAAACTGGTA CGTTGCGTTG TTGGTGAGGT TTTTGATGTA

3961	GCTGTTGATA TTCGTAAATC GTCGCCTACC TTTGGTAAAT GGGTTGGGGT GAATTTATCT

4021	GCTGAGAATA AGCGGCAATT GTGGATCCCT GAGGGATTTG CACATGGTTT TTTGGTGCTG

4081	AGCGAGACTG CGGAATTTTT ATATAAAACG ACGAACTATT ATCATCCTGA TAGTGATAGA

4141	GGGATTGTAT GGAATGATCC TATTCTGAGC ATAAAATGGC CGACGATAGA ACATAATAAT

4201	TATATTTTAT CGATTAAAGA TGCAAGGGCT AAAGAATTGC ATAACATGAA GGAATTATTT

4261	TTGTGAGTAT TGTAAAGAAT ACTTTATGGA ATATAAGTGG GTATATTATA CCATCATTAA

4321	TAGCAATTCC TGCGTTAGGT ATACTGTCTA GAATTCTAGG GACCGAGCAA TTTGGCCTTT

4381	TTACGTTAGC TATTGCCTTA GTTGGATATG CAAGTATTTT TGATGCTGGA TTGACCAGAG

4441	CTGTTATAAG AGAAGTATCA ATATATAAAA ATGTTCATAA AGAATTAAGA GCGATCATTT

4501	CAACTTCAAC GGTAATTCTA ACTATATTGG GCTTGATTGG CGGTAGTGTA CTATTTTTGA

4561	GTAGCAATGT AATTGTTAAA TTATTAAACA TTAACGCGAA TCATGTTGTA GAATCTGTCA

4621	AAGCAATATA TATTATTTCA GCTACCATAC CCTTATACTT GTTAAACCAA GTCTGGTTGG

4681	GGATTTTTGA GGGGATGGAA AAGTTCAGAA AAGTAAATTT AATAAAATCA ATTAACAACT

4741	CTTTTGTGGC TGGATTACCA GTGATTTTCT GTTTTTTTCA TGGAGGATTA CTAAGTGCTA

4801	TATATGGTTT AGTTATGGCA AGAGTCTTAT CACTTATAGT GACCTTTATA TTTAGTCGAA

4861	AACTAATAAT ATCATCTGGG CTGTCTGTAA AAATTGTAAC AGTTAAAAGA TTAATCGGCT

4921	TTGGAAGCTG GATAACAGTT AGCAATATTA TTAGCCCTAT TATGACATAT ATGGATCGTT

4981	TTATTCTTTC ACACATTGTG GGGGCTGATA AAGTTTCTTT TTATACTGCT CCGTCTGAAG

5041	GTATACAACG CTTAACGATA TTACCAAGTG CGTTGTCCAG AGCTATTTTT CCAAGATTAA

5101	GTTCAGAATT GCAATCGGTA AAGCAAACTA AAATATTATC ATATTTTATA ATGGTTATTG

5161	GTATACTTCC AATTGTAATG TTGATAATTA TTTTATCAGA TTTTATAATG TCCGCTTGGA

5221	TGGGACCTAC ATATCATGGG ACGCCAGGTA TAGTATTAAA AATTCTTGCA ATAGGTTTCT

5281	TTTTTAATTG CATTGCACAA ATCCCATTTG TTTCAGTTCA GGCTAGTGGA AGATCAAAAA

5341	TTACAGCTAT TATTCATTTG CTCGAAGTTA TCCCATATTT ATGCATATTA TATATTTTTA

5401	TTTATCATTG GGGAATTGTT GGAGCCGCAA TAGCATGGTC TGTAAGAACA TCGTTAGATT

5461	TTTTGATATT ATTATTAATT GATACGAAAT ATTAATAGCG AATTGATTTT AGGGATTACT

5521	TCCTCAAGCC CATCTAATTA GAGTGCAAAC ATGACTTCTG ATTTTTATAA CTCAAAAGAC

5581	AAAAGTTTAA GTGTTCTTTT GTTTTTTGGG TTTATATTTT TCCTTACACG TAGCTTTCCA

5641	TTTATTCAAT ATAGTTOGAT TATGGAGGGG TTTTTATGTC TTTGTATCAT GTCATTTACA

5701	AAGAAAATTG CAAACGGAAT ATATCACTAT CCTGTTATTT TAATATTTCT ATTAGCTCTT

5761	TTTATAAATT TTATTTATTC CTATATCAAG GGTAACGATA TAGCGATAAT AATTAGGTTT

5821	TATATTATCA TATTATTTAT ATTATGTGCT TATTTCTGCT CTTATGGAAC CATCTCGATT

5881	GTTAAAATAT TTTTATATTT AATGGTATTA CAGGCGGTTA TTATATCCAT CATTAGTATT

5941	TATATGACAA AAACATATGG TATTGGTGAT TATTCAGCAC TAAGACATTA TTTTTTGGAG

6001	AATGATTATG GTGATGTTTA TACATATGGA AGTGGTTTCT ATAGAGTTCA AATTAAAGGA

6061	AATGCTCTCA TTCCATTTGC CTTTATGTTG CATATAGTCA TAAAAGATTA TTTCTATTAT

6121	CGATTCAAAA ATACAATAAC CGTTATTCTG GCTATAGGTA CTATAGTGGC TGGTAATTTT

6181	GCATATTTTG TTTCGATATG CTTGTTTTTT ATGTATATTA TACTATGTTC TAAATCTAAC

6241	TCACGATACG CTAAATTAAG GAAAATTATT TTTGGGGTTT TTCTTACTGT GATTCTCCCT

6301	TTTTTTATTA CATATTCAAT TGAGTTGATA ATCATGAAAT CAAATGGAGC TGATTCTTCT

6361	TTAGGAGTTA GATGGGATCA GTTTACTGTA TTAATTAATG ATCTTACAGA GTCTGTATCA

6421	AATTTTGTTA TAGGTTCTGG TTTGGGTAAT GTCATCAAAA TTCAAACTCC TATCCGTGAT

6481	TATAGTGCAT ATATATATTA TGAATTGCAG TCAGTTTATT TTTTAAATCA ACTTGGCGTT

6541	ATTTTATTTA CTTTGTTTTT ATTAATTAAT CTCCTTCTCA CGATTAAAAT CATAAAATAC

6601	AGTGAGTTGT GTGTGCTATA TTTTCTATAT GTTTCTTATG CAATTACTAA TCCTTATATT

6661	TTAGACTCTA ACCATGTTGC TGTAATAATT GTATTAGTGA CATTAAGTAA TGTTCTAAAA

6721	AAGATGAAAG CTAAATGAAG GTTTTAAGGT GAAGATGGAC ACTGTATATG CCGTTTTGGT

6781	TGCTTACAAC CCAGAACATA ATGATTTAAA AAATGCGGTT GAATTATTGT TGAGACAAGT

6841	TACTAAAGTT GTCGTTTGCA ATAACTCTAC AAATGGTTAT AAATATGCTG AAAATTCTTC

6901	AGGCGATGTA AAAATATTCA ATTTCAATGA TAATTTAGGC ATAGCAGAAG CCCAAAGTAT

6961	AGGAATGAAA TGGGCTTTTG AAAATGGCGC TGATTTTATA TTGCAAATGG ATCAGGATAG

7021	TATTCCTGAT CCTAAGATGG TAGAGCAGTT ACTTACTTGT TACAAAAAAT TGCTTAAACA

7081	AAATGTCAAT GTTGGTTTAG TTGGTTCACA AGATTTTGAT AAAGTAACTG GTGAATTAAA

7141	TAAAGCAAGG GTAAAAAAAG GGAAACCACT TACAGAAGTT TATTATGAGG TAGATAGTAC

7201	AlTAAGTTCT GGCAGTCTAA TACCAAAAAA TAGTTGGTTG ATTGTTGGAG GAATGAAAGA

7261	TGAGCTTTTT ATCGATGCGG TAGACCATGA ATATTGTTGG AGATTAAGAG CTGCTGGGTT

7321	TAAAGTAATT AGGAATAAAA ATGCGTTACT TGCACATAGA CTTGGAGATG GGCGATTTAA

7381	GATCTTAAAT ATTCTTTCTG TCGGTTTGCC AAGCCCATTT CGTCATTATT ATGCTACTCG

7441	AAATATCTTT CTTTTATTAA ATAAAAATTA TGTACCCATC TACTGGAAAA TTTCTAGTCT

7501	GGTTAAATTA ATTGGAAAGG TTTTTTTATA TCCTATTTTC CTTCCAAATG GTAATAAAAG

7561	GTTATATTTT TTTTTAAAAG GCATTAATGA CGGTTTAATG GGTCGAAGTG GTAAAATGAA

7621	ATGAATCATA GATTAGAAAA ATTCTCAGTT TTAATTAGCA TTTATAAAAA TGATCTACCG

7681	CAATTTTTTG AGGTGGCTCT ACGCTCTATT TTTCACGATC AAACACTTAA GCCAGATCAA

7741	ATAGTAATTG TTGCAGATGG AGAACTCCAT CAAACACACA TCGATATTAT AAATTCATTC

7801	ATTGATGATG TTGGCAATAA AATAGTAACA TTTGTACCTT TACCTAGAAA TGTTGGATTG

7861	GCTAATGCCT TAAATGAAGG ATTAAAGGCT TGTAGGAATG AGTTAGTGGC AAGAATGGAT

7921	GCTGATGATA TTTCTTTGCC TCATCGGTTT GAGAAACAAA TTTCTTTTAT GATTAATAAT

7981	TCAGAAATAG ATGTATGTGG CAGTTTTATT GATGAAATTG AAACTGTTAC TGAGGAGTTT

8041	ATTTCAACAC GCAAAGTGCC TCTCGAACAT AGAGAAATAG TTAAATTCGC GAGGAAACGA

8101	AGCGCAGTTA GCCATCCTTC TGTAATTTTT AGAAAGAATA CAGTATTAGC TGTTGGTGGT

8161	TATCCTCCAT TCAGAAAATC TCAAGATTTT GCATTGTGGA GCCTATTAAT TGTACATAAT

8221	GCAAGATTTG CAAATCTTCC AGATATTTTA TTAAAAATGC GAACTGGTCG TAATCTTATG

8281	GCTCGACGTG GATTGTCATA TTTATTGTAC GAGTATAAAG TATTGTATTA TCAATATAAA

8341	ATTGGTTTTA TTCGAAAAAA TGAATTAATA AGTAATGCTA TGTTGAGAAC ATTTTTTCGT

8401	ATAATGCCAT CTAAATTAAA GGAGCTGATG TATTCAATCG TTAGGAATCG ATAATAATAA

8461	TTTTCTGATT AAGTGTTATG GATTTATTTT TATTAGGCAT ATTCTATAAT TAAGCATAAC

8521	CCGCATACCA CCCAGCGGTA TCCTGACAGG AGTAAACAAT GTCAAAGCAA CAGATCGGCG

8581	TCGTCGGTAT GGCAGTGATG GGGCGCAACC TTGCGCTCAA TATCGAAAGC CGTGGTTATA

8641	CCGTCTCTAT TTTCAACCGT TCCCGTGAAA AGACCGAAGA AGTGATTACC GAAAATCCAG

8701	GCAAGAAACT GGTTCCTTAC TATACGGTGA AAGAATTTGT TGAATCTCTG GAAACGCCTC

8761	GTCGCATCCT GTTAATGGTG AAAGCAGGTG CTGGCACGGA TGCTGCTATT GATTCCCTCA

8821	AGCCATACCT CGATAAAGGT GACATCATCA TTGATGGTGG TAACACCTTC TTCCATGACA

8881	CCATTCGTCG TAACCGTGAG CTTTCTGCAG AAGGCTTTAA CTTTATCGGT ACCGGTGTTT

8941	CCGGTGGTGA AGAAGGTGCG CTGAAAGGTC CTTCCATTAT GCCTGGTGGG CAGAAAGAAG

9001	CTTATGAACT GATTGCGCCG ATCCTGACCA AAATCGCCGC TGTGGCTGAA GACGGCGAAC

9061	CGTGCGTTAC CTATATTGGT GCCGATGGTG CAGGTCATTA TGTGAAGATG GTTCACAACG

9121	GTATTGAATA CGGTGATATG CAGCTGATTG CTGAAGCCTA TTCTCTGCTT AAAGGTGGCT

9181	TGAACCTCAC CAACGAAGAA CTGGCGCAGA CCTTTACCGA GTGGAATAAC GGTGAACTGA

9241	GCAGCTACCT GATCGACATC ACCAAAGATA TCTTCACCAA AAAAGATGAA GAGGGTAACT

9301	ACCTGGTTGA TGTGATTCTG GATGAAGCAG CAAACAAAGG TACGGGCAAA TGGACCAGCC

9361	AGAGCGCGCT GGATCTCGGC GAACCGCTGT CGCTGATTAC CGAGTCTGTG TTTGCACGTT

9421	ATATCTCTTC TCTGAAAGAG CAGCGTGTTG CCGCATCTAA AGTTCTCTCT GGCCCGCAAG

9481	CGCAGCCAGC TGGCGACAAT GCTGAGTTCA TCGAAAAAGT TCGCCGTGCG CTGTATCTGG

9541	GCAAAATCGT TTCTTACGCT CAGGGCTTCT CTCAGCTACG CGCTGCGTCT GAAGAGTACA

9601	ACTGGGATCT GAACTACGGT GAAATCGCGA AGATTTTCCG TGCTGGCTCC ATCATCCGTG

9661	CGCAGTTCCT GCAGAAAATC ACCGATGCTT ATGCCGAAAA TCCGCAGATC GCTAACCTGT

9721	TGCTGGCTCC TTACTTCAAG CAAATTGCCG ATGACTACCA GCAGGCGCTG CGCGATGTCG

9781	TCGCTTACGC AGTACAGAAC GGTATCCCGG TGCCCTACCT CGCCGCTGCG GTTGCCTATT

9841	ACGACAGCTA CCGCGCCGCT GTTCTGCCTG CGAACCTGAT CCAGGCACAG CGTGACTATT

9901	TCGGTGCGCA TACTTATAAG CGCATTGATA AAGAAGGTGT GTTCCATACC GAATGGCTGG

9961	ATTAATCTGA TTTAAATCAA TTAATCAAAG CAAGGCCCGG AGAAACCCTC CGGGCTTTTT

10021	TATTATACAA AGCGGCAGGT TAGGGCCTTT TTTTATAATT TATAGTTAAA AACGCGATAT

10081	AATACAGCGC CGCACAGCAG GATCGCTGCC TTGACAGTTC ATCTACATCA GCGTTAAAAA

10141	TCCCGCAGTA GATGAAGCTG TGGTGGTGGA TTAATGACCA CTCTAAATGT TTAACCGGAA

10201	GAAGTCAGAG CTAATGAAAA TAACAATTTC AGGAACAGGT TATGTTGGTC TTTCAAATGG

10261	TATTCTGATT GCGCAAAACC ACGAAGTGGT TGCACTGGAT ATCGTTCAGG CCAAAGTGGA

10321	CATGCTTAAC AAGAGGCAGT CACCGCTTGT TGATAAGGAG ATTGAAGAGT ATCTGGCGAC

10381	TAAAGATCTC AATTTCCGCG CTACGACAGA TAAGTATGAC GCGTATAAAA ATGCCGATTA

10441	CGTTATTATT GCCACACCTA CCGATTATGA TCCGAAAACA AATTACTTTA ATACCTCAAG

10501	CGTGGAAGCG GTCATTCGTG ATGTGACAGA AATTAATCCC AACGCGGTAA TGATTATAAA

10561	ATCAACTATC CCTGTTGGTT TTACAGAGTC CATTAAAGAA CGTTTTGGTA TTGAAAATGT

10621	GATCTTTTCG CCTGAGTTTT TGCGTGAAGG TAAAGCACTT TATGATAACT TACACCCATC

10681	ACGCATTGTG ATTGGCGAGC AGTCTGAACG CGCTAAACGT TTTGCTGCGT TATTACAGGA

10741	AGGCGCCATT AAGCAAGACA TACCAACATT GTTTACTGAC TCAACCGAGG CTGAGGCGAT

10801	TAAACTTTTT GCGAACACTT ATCTGGCGAT GCGTGTAGCG TATTTCAATG AACTTGATAG

10861	TTATGCTGAA AGCCTGGGAC TTAATTCACG CCAGATTATT GAGGGCGTAT GCCTTGACCC

10921	GCGTATCGGT AATCACTACA ACAACCCGTC ATTCGGTTAT GGTGGTTATT GTCTGCCGAA

10981	AGATACTAAG CAGTTACTGG CAAATTACCA GTCTGTGCCG AATAACCTGA TCTCGGCAAT

11041	TGTTGACGCC AACCGCACGC GCAAAGATTT TATTGCCGAT TCTATCCTTG CACGTAAACC

11101	GAAAGTTGTT GGCGTCTATC GTTTGATTAT GAAGAATGGT TCAGACAATT TTCGTGCTTC

11161	CTCGATTCAG GGTATTATGA AGCGAATCAA GGCGAAAGGT GTGCCTGTAA TCGTTTATGA

11221	GCCAGCTATG AAAGAGGACG ATTTTTTCCG GTCGCGCGTG GTACGTGATC TGGATGCGTT

11281	CAAACAAGAA GCTGATGTTA TTATTTCTAA CCGTATGTCT GCCGATCTGG CTGATGTAGC

11341	AGATAAAGTT TATACGCGCG ACTTGTTTGG CAATGATTAA TTATTTTGTT TCATTCTAAG

11401	AAAAGGCCCT AATAAATTAG GGCCTTTTCT TATGGTTTTG TAAAATCAAA CTTTATAGAA

11461	GTTACGATAC CATTCTACAA AGTTCTTTAC CCCTTCTTTA ACTGACGTTT CAGGTTTGAA

11521	TCCTATTACG TCATACAGTG CTTTTGTATC AGCACTGGTT TCCAGTACAT CACCGGGTTG

11581	GAGAGGCATC ATATTTTTGT TGGCTTCAAT ACCCAGAGCC TCTTCTAACG CATTGATATA

11641	GTCCATCAAC TCCACAGGCG AACTATTACC AATGTTATAG ACACGATATG GTGCTGAACT

11701	TGTTGCAGGC GAGCCTGTTT CTACAGCCCA CTGTGGGTTT TTTTCTGGAA TAACATCCTG

11761	TAAGCGAATA ATAGCTTCGG CAATATCATC AATGTAAGTA AAGTCACGCT TCATTTTGCC

11821	GAAGTTGTAA ACATCAATGC TTTTACCTTC CAGCATGGCT TTAGTGAATT TAAATAATGC

11881	CATATCCGGA CGTCCCCATG GACCATAAAC CGTAAAGAAA CGCAGCCCTG TGGTCGGTAA

11941	GCCATACAAA TGAGAATATG TATGGGCCAT GAGTTCATTC GCTTTTTTAG TTGCTGCATA

12001	AAGCGAAACA GGATGATCTA CAGAGTCATC TGTAGAGAAA GGCATCTTGC GGTTCATGCC

12061	ATAAACAGAA CTGGAGGAAG CGTAAAGTAG ATGCTGAACA TTATTATGGC GACATCCTTC

12121	TAGTATGTTC AGGAATCCAA TCAGGTTTGC ATCTGCATAT GCATTGGGAT TTTCAAGAGA

12181	GTAACGTACA CCGGCTTGCG CAGCGAGGTT TATTACGCGT TCGAACCGCT CGTCTGCAAA

12241	CAGTGCCGCC ATTTTCTCAC GATCGGCCAG GTCAATTTTA TAAAAACTGA AGTTGTCGTG

12301	CTTGAGTAAA TCAAGTCGTG CTTGTTTGAG GTTGACATCG TAATAATCAT TTAAGTTGTC

12361	AATGCCTACA ACCTGATGAC CAGCTGCAAG AAGCCGTTTA CTTAGATAGA AACCGATAAA

12421	GCCAGCAGCT CCCGTAACCA GAAATTTCAT TTATAATCCT CGCTCAGGCT AGAATATAGC

12481	CAATCTTCAT CTGGCATAAC TGAAAGTTAA ATTATACCGT TAGACAAGAA AAAAAGATAA

12541	TCGGTATCAG TTCTAAACTT GGCTGTTTTT TCTGGTAACG TGCTCATTTT ACAATCAAAG

12601	CTGTTCTAAG CTGACTATAC AAGCCGACGT CATTATCTCC AACCGTATGG CAGAAGAGCT

12661	TAAGGATGTG GCAGACAAAG TCTACACCCG CGATCTCTTT GGCAGTGACT AACATCCTGT

12721	TATCATGGCG ATTTTCGCCC TGATTCTCTT ATGTTCCCTT TGTAATAATT CATTATTTTT

12781	ATCATTTATC CTATAGCATT CATGGCGATT ATCGCTAAAC TATGGCGGCG CGCCACGTGG

12841	GATCCCCGGG TACCGAGCTC GAATTCGCCC TATAGTGAGT CGTATTACAA TTCACTGGCC

12901	GTCGTTTTAC AACGTCGTGA CTGGGAAAAC CCTGGCGTTA CCCAACTTAA TCGCCTTGCA

12961	GCACATCCCC CTTTCGCCAG CTGGCGTAAT AGCGAAGAGG CCCGCACCGA TCGCCCTTCC

13021	CAACAGTTGC GCAGCTGAAT GGCGAATGGC GCCTGATGCG GTATTTTCTC CTTACGCATC

13081	TGTGCGGTAT TTCACACCGC ATATGGTGCA CTCTCAGTAC AATCTGCTCT GATGCCGCAT

13141	AGTTAAGCCA GCCCCGACAC CCGCCAACAC CCGCTGACGC GAACCCCTTG CGGCCGCATC

13201	GAATATAACT TCGTATAATG TATGCTATAC GAAGTTATTA GCGATGAGCT CGGACTTCCA

13261	TTGTTCATTC CACGGACAAA AACAGAGAAA GGAAACGACA GAGGCCAAAA AGCTCGCTTT

13321	CAGCACCTGT CGTTTCCTTT CTTTTCAGAG GGTATTTTAA ATAAAAACAT TAAGTTATGA

13381	CGAAGAAGAA CGGAAACGCC TTAAACCGGA AAATTTTCAT AAATAGCGAA AACCCGCGAG

13441	GTCGCCGCCC CGTAACCTGT CGGATCACCG GAAAGGACCC GTAAAGTGAT AATGATTATC

13501	ATCTACATAT CACAACGTGC GTGGAGGCCA TCAAACCACG TCAAATAATC AATTATGACG

13561	CAGGTATCGT ATTAATTGAT CTGCATCAAC TTAACGTAAA AACAACTTCA GACAATACAA

13621	ATCAGCGACA CTGAATACGG GGCAACCTCA TGTCCGAGCT CGCGAGCTCG TCGACAGCGA

13681	CACACTTGCA TCGGATGCAG CCCGGTTAAC GTGCCGGCAC GGCCTGGGTA ACCAGGTATT

13741	TTGTCCACAT AACCGTGCGC AAAATGTTGT GGATAAGCAG GACACAGCAG CAATCCACAG

13801	CAGGCATACA ACCGCACACC GAGGTTACTC CGTTCTACAG GTTACGACGA CATGTCAATA

13861	CTTGCCCTTG ACAGGCATTG ATGGAATCGT AGTCTCACGC TGATAGTCTG ATCGACAATA

13921	CAAGTGGGAC CGTGGTCCCA GACCGATAAT CAGACCGACA ACACGAGTGG GATCGTGGTC

13981	CCAGACTAAT AATCAGACCG ACGATACGAG TGGGACCGTG GTCCCAGACT AATAATCAGA

14041	CCGACGATAC GAGTGGGACC GTGGTTCCAG ACTAATAATC AGACCGACGA TACGAGTGGG

14101	ACCGTGGTCC CAGACTAATA ATCAGACCGA CGATACGAGT GGGACCATGG TCCCAGACTA

14161	ATAATCAGAC CGACGATACG AGTGGGACCG TGGTCCCAGT CTGATTATCA GACCGACGAT

14221	ACGAGTGGGA CCGTGGTCCC AGACTAATAA TCAGACCGAC GATACGAGTG GGACCGTGGT

14281	CCCAGACTAA TAATCAGACC GACGATACGA GTGGGACCGT GGTCCCAGTC TGATTATCAG

14341	ACCGACGATA CAAGTGGAAC AGTGGGCCCA GAGAGAATAT TCAGGCCAGT TATGCTTTCT

14401	GGCCTGTAAC AAAGGACATT AAGTAAAGAC AGATAAACGT AGACTAAAAC GTGGTCGCAT

14461	CAGGGTGCTG CCTTTTCAAG TTCCTTAAGA ATGGCCTCAA TTTTCTCTAT ACACTCAGTT

14521	GGAACACGAG ACCTGTCCAG GTTAAGCACC ATTTTATCGC CCTTATACAA TACTGTCGCT

14581	CCAGGAGCAA ACTGATGTCG TGAGCTTAAA CTAGTTCTTG ATGCAGATGA CGTTTTAAGC

14641	ACAGAAGTTA AAAGAGTGAT AACTTCTTCA GCTTCAAATA TCACCCCAGC TTTTTTCTGC

14701	TCATGAAGGT TAGATGCCTG CTGCTTAAGT AATTCCTCTT TATCTGTAAA TTTTTTTTGA

14761	AGTGCATCAC CTGACCGGGC AGATAGTTCA CCGGGGTGAG AAAAAAGAGC AACAACTGAT

14821	TTAGGCAATT TGGCGGTGTT GATACAGCGG GTAATAATCT TACGTGAAAT ATTTTCCGCA

14881	TCAGCCAGCG CAGAAATATT TCCAGCAAAT TCATTCTGCA ATCGGCTTGC ATAACGCTGA

14941	CCACGTTCAT AAGCACTTGT TGGGCGATAA TCGTTACCCA ATCTGGATAA TGCAGCCATC

15001	TGCTCATCAT CCAGCTCGCC AACCAGAACA CGATAATCAC TTTCGGTAAG TGCAGCAGCT

15061	TTACGACGGC GACTCCCATC GGCAATTTCT ATGACACCAG ATACTCTTCG ACCGAACGCC

15121	GGTGTCTGTT GACCAGTCAG TAGAAAAGAA GGGATGAGAT CATCCAGTGC GTCCTCAGTA

15181	AGCAGCTCCT GGTCACGTTC ATTACCTGAC CATACCCGAG AGGTCTTCTC AACACTATCA

15241	CCCCGGAGCA CTTCAAGAGT AAACTTCACA TCCCGACCAC ATACAGGCAA AGTAATGGCA

15301	TTACCGCGAG CCATTACTCC TACGCGCGCA ATTAACGAAT CCACCATCGG GGCAGCTGGT

15361	GTCGATAACG AAGTATCTTC AACCGGTTGA GTATTGAGCG TATGTTTTGG AATAACAGGC

15421	GCACGCTTCA TTATCTAATC TCCCAGCGTG GTTTAATCAG ACGATCGAAA ATTTCATTGC

15481	AGACAGGTTC CCAAATAGAA AGAGCATTTC TCCAGGCACC AGTTGAAGAG CGTTGATCAA

15541	TGGCCTGTTC AAAAACAGTT CTCATCCGGA TCTGACCTTT ACCAACTTCA TCCGTTTCAC

15601	GTACAACATT TTTTAGAACC ATGCTTCCCC AGGCATCCCG AATTTGCTCC TCCATCCACG

15661	GGGACTGAGA GCCATTACTA TTGCTGTATT TGGTAAGCAA AATACGTACA TCAGGCTCGA

15721	ACCCTTTAAG ATCAACGTTC TTGAGCAGAT CACGAAGCAT ATCGAAAAAC TGCAGTGCGG

15781	AGGTGTAGTC AAACAACTCA GCAGGCGTGG GAACAATCAG CACATCAGCA GCACATACGA

15841	CATTAATCGT GCCGATACCC AGGTTAGGCG CGCTGTCAAT AACTATGACA TCATAGTCAT

15901	GAGCAACAGT TTCAATGGCC AGTCGGAGCA TCAGGTGTGG ATCGGTGGGC AGTTTACCTT

15961	CATCAAATTT GCCCATTAAC TCAGTTTCAA TACGGTGCAG AGCCAGACAG GAAGGAATAA

16021	TGTCAAGCCC CGGCCAGCAA GTGGGCTTTA TTGCATAAGT GACATCGTCC TTTTCCCCAA

16081	GATAGAAAGG CAGGAGAGTG TCTTCTGCAT GAATATGAAG ATCTGGTACC CATCCGTGAT

16141	ACATTGAGGC TGTTCCCTGG GGGTCGTTAC CTTCCACGAG CAAAACACGT AGCCCCTTCA

16201	GAGCCAGATC CTGAGCAAGA TGAACAGAAA CTGAGGTTTT GTAAACGCCA CCTTTATGGG

16261	CAGCAACCCC GATCACCGGT GGAAATACGT CTTCAGCACG TCGCAATCGC GTACCAAACA

16321	CATCACGCAT ATGATTAATT TGTTCAATTG TATAACCAAC ACGTTGCTCA ACCCGTCCTC

16381	GAATTTCCAT ATCCGGGTGC GGTAGTCGCC CTGCTTTCTC GGCATCTCTG ATAGCCTGAG

16441	AAGAAACCCC AACTAAATCC GCTGCTTCAC CTATTCTCCA GCGCCGGGTT ATTTTCCTCG

16501	CTTCCGGGCT GTCATCATTA AACTGTGCAA TGGCGATAGC CTTCGTCATT TCATGACCAG

16561	CGTTTATGCA CTGGTTAAGT GTTTCCATGA GTTTCATTCT GAACATCCTT TAATCATTGC

16621	TTTGCGTTTT TTTATTAAAT CTTGCAATTT ACTGCAAAGC AACAACAAAA TCGCAAAGTC

16681	ATCAAAAAAC CGCAAAGTTG TTTAAAATAA GAGCAACACT ACAAAAGGAG ATAAGAAGAG

16741	CACATACCTC AGTCACTTAT TATCACTAGC GCTCGCCGCA GCCGTGTAAC CGAGCATAGC

16801	GAGCGAACTG GCGAGGAAGC AAAGAAGAAC TGTTCTGTCA GATAGCTCTT ACGCTCAGCG

16861	CAAGAAGAAA TATCCACCGT GGGAAAAACT CCAGGTAGAG GTACACACGC GGATAGCCAA

16921	TTCAGAGTAA TAAACTGTGA TAATCAACCC TCATCAATGA TGACGAACTA ACCCCCGATA

16981	TCAGGTCACA TGACGAAGGG AAAGAGAAGG AAATCAACTG TGACAAACTG CCCTCAAATT

17041	TGGCTTCCTT AAAAATTACA GTTCAAAAAG TATGAGAAAA TCCATGCAGG CTGAAGGAAA

17101	CAGCAAAACT GTGACAAATT ACCCTCAGTA GGTCAGAACA AATGTGACGA ACCACCCTCA

17161	AATCTGTGAC AGATAACCCT CAGACTATCC TGTCGTCATG GAAGTGATAT CGCGGAAGGA

17221	AAATACGATA TGAGTCGTCT GGCGGCCTTT CTTTTTCTCA ATGTATGAGA GGCGCATTGG

17281	AGTTCTGCTG TTGATCTCAT TAACACAGAC CTGCAGGAAG CGGCGGCGGA AGTCAGGCAT

17341	ACGCTGGTAA CTTTGAGGCA GCTGGTAACG CTCTATGATC CAGTCGATTT TCAGAGAGAC

17401	GATGCCTGAG CCATCCGGCT TACGATACTG ACACAGGGAT TCGTATAAAC GCATGGCATA

17461	CGGATTGGTG ATTTCTTTTG TTTCACTAAG CCGAAACTGC GTAAACCGGT TCTGTAACCC

17521	GATAAAGAAG GGAATGAGAT ATGGGTTGAT ATGTACACTG TAAAGCCCTC TGGATGGACT

17581	GTGCGCACGT TTGATAAACC AAGGAAAAGA TTCATAGCCT TTTTCATCGC CGGCATCCTC

17641	TTCAGGGCGA TAAAAAACCA CTTCCTTCCC CGCGAAACTC TTCAATGCCT GCCGTATATC

17701	CTTACTGGCT TCCGCAGAGG TCAATCCGAA TATTTCAGCA TATTTAGCAA CATGGATCTC

17761	GCAGATACCG TCATGTTCCT GTAGGGTGCC ATCAGATTTT CTGATCTGGT CAACGAACAG

17821	ATACAGCATA CGTTTTTGAT CCCGGGAGAG ACTATATGCC GCCTCAGTGA GGTCGTTTGA

17881	CTGGACGATT CGCGGGCTAT TTTTACGTTT CTTGTGATTG ATAACCGCTG TTTCCGCCAT

17941	GACAGATCCA TGTGAAGTGT GACAAGTTTT TAGATTGTCA CACTAAATAA AAAAGAGTCA

18001	ATAAGCAGGG ATAACTTTGT GAAAAAACAG CTTCTTCTGA GGGCAATTTG TCACAGGGTT

18061	AAGGGCAATT TGTCACAGAC AGGACTGTCA TTTGAGGGTG ATTTGTCACA CTGAAAGGGC

18121	AATTTGTCAC AACACCTTCT CTAGAACCAG CATGGATAAA GGCCTACAAG GCGCTCTAAA

18181	AAAGAAGATC TAAAAACTAT AAAAAAAATA ATTATAAAAA TATCCCCGTG GATAAGTGGA

18241	TAACCCCAAG GGAAGTTTTT TCAGGCATCG TGTGTAAGCA GAATATATAA GTGCTGTTCC

18301	CTGGTGCTTC CTCGCTCACT CGACCGGGAG GGTTCGAGAA GGGGGGGCAC CCCCCTTCGG

18361	CGTGCGCGGT CACGCGCACA GGGCGCAGCC CTGGTTAAAA ACAAGGTTTA TAAATATTGG

18421	TTTAAAAGCA GGTTAAAAGA CAGGTTAGCG GTGGCCGAAA AACGGGCGGA AACCCTTGCA

18481	AATGCTGGAT TTTCTGCCTG TGGACAGCCC CTCAAATGTC AATAGGTGCG CCCCTCATCT

18541	GTCAGCACTC TGCCCCTCAA GTGTCAAGGA TCGCGCCCCT CATCTGTCAG TAGTCGCGCC

13601	CCTCAAGTGT CAATACCGCA GGGCACTTAT CCCCAGGCTT GTCCACATCA TCTGTGGGAA

18661	ACTCGCGTAA AATCAGGCGT TTTCGCCGAT TTGCGAGGCT GGCCAGCTCC ACGTCGCCGG

18721	CCGAAATCGA GCCTGCCCCT CATCTGTCAA CGCCGCGCCG GGTGAGTCGG CCCCTCAAGT

18781	GTCAACGTCC GCCCCTCATC TGTCAGTGAG GGCCAAGTTT TCCGCGAGGT ATCCACAACG

18841	CCGGCGGCCG GCCGCGGTGT CTCGCACACG GCTTCGACGG CGTTTCTGGC GCGTTTGCAG

18901	GGCCATAGAC GGCCGCCAGC CCAGCGGCGA GGGCAACCAG CCGAGGGCTT CGCCCTGTCG

18961	CTCGACTGCG GCGAGCACTA CTGGCTGTAA AAGGACAGAC CACATCATGG TTCTGTGTTC

19021	ATTAGGTTGT TCTGTCCATT GCTGACATAA TCCGCTCCAC TTCAACGTAA CACCGCACGA

19081	AGATTTCTAT TGTTCCTGAA GGCATATTCA AATCGTTTTC GTTACCGCTT GCAGGCATCA

19141	TGACAGAACA CTACTTCCTA TAAACGCTAC ACAGGCTCCT GAGATTAATA ATGCGGATCT

19201	CTACGATAAT GGGAGATTTT CCCGACTGTT TCGTTCGCTT CTCAGTGGAT AACAGCCAGC

19261	TTCTCTGTTT AACAGACAAA AACAGCATAT CCACTCAGTT CCACATTTCC ATATAAAGGC

19321	CAAGGCATTT ATTCTCAGGA TAATTGTTTC AGCATCGCAA CCGCATCAGA CTCCGGCATC

19381	GCAAACTGCA CCCGGTGCCG GGCAGCCACA TCCAGCGCAA AAACCTTCGT GTAGACTTCC

19441	GTTGAACTGA TGGACTTATG TCCCATCAGG CTTTGCAGAA CTATCAGCGG TATACCGGCA

19501	TACAGCATGT GCATCGCATA GGAATGGCGG AACGTATGTG GTGTGACCGG AACAGAGAAC

19561	GTCACACCGT CAGCAGCAGC GGCGGCAACC GCCTCCCCAA TCCAGGTCCT GACCGTTCTG

19621	TCCGTCACTT CCCAGATCCG CGCTTTCTCT GTCCTTCCTG TGCGACGGTT ACGCCGCTCC

19681	ATGAGCTTAT CGCGAATAAA TACCTGTGAC GGAAGATCAC TTCGCAGAAT AAATAAATCC

19741	TGGTGTCCCT GTTGATACCG GGAAGCCCTG GGCCAACTTT TGGCGAAAAT GAGACGTTGA

19801	TCGGCACGTA AGAGGTTCCA ACTTTCACCA TAATGAAATA AGATCACTAC CGGGCGTATT

19861	TTTTGAGTTA TCGAGATTTT CAGGAGCTAA GGAAGCTAAA ATGGAGAAAA AAATCACTGG

19921	ATATACCACC GTTGATATAT CCCAATGGCA TCGTAACTAA CATTTTGAGG CATTTCAGTC

19981	AGTTGCTCAA TGTACCTATA ACCAGACCGT TCAGCTGGAT ATTACGGCCT TTTTAAAGAC

20041	CGTAAAGAAA AATAAGCACA AGTTTTATCC GGCCTTTATT CACATTCTTG CCCGCCTGAT

20101	GAATGCTCAT CCGGAATTTC GTATGGCAAT GAAAGACGGT GAGCTGGTGA TATGGGATAG

20161	TGTTCACCCT TGTTACACCG TTTTCCATGA GCAAACTGAA ACGTTTTCAT CGCTCTGGAG

20221	TGAATACCAC GACGATTTCC GGCAGTTTCT ACACATATAT TCGCAAGATG TGGCGTGTTA

20281	CGGTGAAAAC CTGGCCTATT TCCCTAAAGG GTTTATTGAG AATATGTTTT TCGTCTCAGC

20341	CAATCCCTGG GTGAGTTTCA CCAGTTTTGA TTTAAACGTG GCCAATATGG ACAACTTCTT

20401	CGCCCCCGTT TTCACCATGG GCAAATATTA TACGCAAGGC GACAAGGTGC TGATGCCGCT

20461	GGCGATTCAG GTTCATCATG CCCTTTGTGA TGGCTTCCAT GTCGGCAGAA TGCTTAATGA

20521	ATTACAACAG TACTGCGATG AGTGGCAGGG CGGGGCGTAA TTTTTTTAAG GCAGTTATTG

20581	GTGCCCTTAA ACGCCTGGTT GCTACGCCTG AATAAGTGAT AATAAGCGGA TGAATGGCAG

20641	AAATTCGATG ATAAGCTGTC AAACATGAGA ATTGGTCGAC GGCCCGGGCG GCCGCAAGGG

20701	GTTCGCGTTG GCCGATTCAT TAATGCAGCT GGCACGACAG GTTTCCCGAC TGGAAAGCGG

20761	GCAGTGAGCG CAACGCAATT AATGTGAGTT AGCTCACTCA TTAGGCACCC CAGGCTTTAC

20821	ACTTTATGCT TCCGGCTCGT ATGTTGTGTG GAATTGTGAG CGGATAACAA TTTCACACAG

20881	GAAACAGCTA TGACCATGAT TACGCCAAGC TATTTAGGTG AGACTATAGA ATACTCAAGC

20941	TTGCATGCCT GCAGGTCGAC TCTAGAGGAT CCCACGACGT CG

Nucleotide Sequence for pCC1FOS cut (pFOS)

and S. flexneri 6 O-antigen with Z3206

Locus pFOS cut and O-antigen cut (Z3206+)

Definition Ligation of inverted S. flexneri 6 O antigen cluster

amplified with Z3206Nhe and wzzAscI cut with NheI and AscI into

pCC1FOS with MCS cassette cut with NheI and AscI

Features	Location/Qualifiers
CDS	complement(370..396)
	/label=wzz′
CDS	748..1752
	/label=uge
CDS	complement(1818..3011)
	/label=ugd
CDS	complement(3233..4639)
	/label=gnd
CDS	complement(4744..5577)
	/label=wfbZ
CDS	complement(5574..6443)
	/label=wfbY
CDS	complement(6460..7647)
	/label=wzy
CDS	complement(7703..8935)
	/label=wzx
CDS	complement(8932..9489)
	/label=rmlC
CDS	complement(9494..10372)
	/label=rmlA
CDS	complement(10430..11329)
	/label=rmlD
CDS	complement(11329..12414)
	/label=rmlB
CDS	complement(12787..13680)
	/label=galF
CDS	complement(13912..14907)
	/label=Z3206
CDS	complement(15065..15097)
	/label=′weaM
CDS	complement(15525..16184)
	/label=cat
CDS	16403..16750
	/label=redF
CDS	18145..18900
	/label=repE
CDS	19479..20654
	/label=parA
CDS	20654..21625
	/label=parB

Length: 22887 bp

Type: DNA circular UNA

Sequence:

SEQ ID NO: 29

1	GCGGCCGCAA GGGGTTCGCG TCAGCGGGTG TTGGCGGGTG TCGGGGCTGG CTTAACTATG

61	CGGCATCAGA GCAGATTGTA CTGAGAGTGC ACCATATGCG GTGTGAAATA CCGCACAGAT

121	GCGTAAGGAG AAAATACCGC ATCAGGCGCC ATTCGCCATT CAGCTGCGCA ACTGTTGGGA

181	AGGGCGATCG GTGCGGGCCT CTTCGCTATT ACGCCAGCTG GCGAAAGGGG GATGTGCTGC

241	AAGGCGATTA AGTTGGGTAA CGCCAGGGTT TTCCCAGTCA CGACGTTGTA AAACGACGGC

301	CAGTGAATTG TAATACGACT CACTATAGGG CGAATTCGAG CTCGGTACCC GGGGATCCCA

361	CGTGGCGCGC CGCCATAGTT TAGCGATAAT CGCCATGAAT GCTATAGGAT AAATGATAAA

421	AATAATGAAT TATTACAAAG GGAACATAAG AGAATCAGGG CGAAAATCGC CATGATAACA

481	GGATGTTAGT CACTGCCAAA GAGATCGCGG GTGTAGACTT TGTCTGCCAC ATCCTTAAGC

541	TCTTCTGCCA TACGGTTGGA GATAATGACG TCGGCTTGTA TAGTCAGCTT AGAACAGCTT

601	TGATTGTAAA ATGAGCACGT TACCAGAAAA AACAGCCAAG TTTAGAACTG ATACCGATTA

661	TCTTTTTTTC TTGTCTAACG GTATAATTTA ACTTTCAGTT ATGCCAGATG AAGATTGGCT

721	ATATTCTAGC CTGAGCGAGG ATTATAAATG AAATTTCTGG TTACGGGAGC TGCTGGCTTT

781	ATCGGTTTCT ATCTAAGTAA ACGGCTTCTT GCAGCTGGTC ATCAGGTTGT AGGCATTGAC

841	AACTTAAATG ATTATTACGA TGTCAACCTC AAACAAGCAC GACTTGATTT ACTCAAGCAC

901	GACAACTTCA GTTTTTATAA AATTGACCTG GCCGATCGTG AGAAAATGGC GGCACTGTTT

961	GCAGACGAGC GGTTCGAACG CGTAATAAAC CTCGCTGCGC AAGCCGGTGT ACGTTACTCT

1021	CTTGAAAATC CCAATGCATA TGCAGATGCA AACCTGATTG GATTCCTGAA CATACTAGAA

1081	GGATGTCGCC ATAATAATGT TCAGCATCTA CTTTACGCTT CCTCCAGTTC TGTTTATGGC

1141	ATGAACCGCA AGATGCCTTT CTCTACAGAT GACTCTGTAG ATCATCCTGT TTCGCTTTAT

1201	GCAGCAACTA AAAAAGCGAA TGAACTCATG GCCCATACAT ATTCTCATTT GTATGGCTTA

1261	CCGACCACAG GGCTGCGTTT CTTTACGGTT TATGGTCCAT GGGGACGTCC GGATATGGCA

1321	TTATTTAAAT TCACTAAAGC CATGCTGGAA GGTAAAAGCA TTGATGTTTA CAACTTCGGC

1381	AAAATGAAGC GTGACTTTAC TTACATTGAT GATATTGCCG AAGCTATTAT TCGCTTACAG

1441	GATGTTATTC CAGAAAAAAA CCCACAGTGG GCTGTAGAAA CAGGCTCGCC TGCAACAAGT

1501	TCAGCACCAT ATCGTGTCTA TAACATTGGT AATAGTTCGC CTGTGGAGTT GATGGACTAT

1561	ATCAATGCGT TAGAAGAGGC TCTGGGTATT GAAGCCAACA AAAATATGAT GCCTCTCCAA

1621	CCCGGTGATG TACTGGAAAC CAGTGCTGAT ACAAAAGCAC TGTATGACGT AATAGGATTC

1681	AAACCTGAAA CGTCAGTTAA AGAAGGGGTA AAGAACTTTG TAGAATGGTA TCGTAACTTC

1741	TATAAAGTTT GATTTTACAA AACCATAAGA AAAGGCCCTA ATTTATTAGG GCCTTTTCTT

1801	AGAATGAAAC AAAATAATTA ATCATTGCCA AACAAGTCGC GCGTATAAAC TTTATCTGCT

1861	ACATCAGCCA GATCGGCAGA CATACGGTTA GAAATAATAA CATCAGCTTC TTGTTTGAAC

1921	GCATCCAGAT CACGTACCAC GCGCGACCGG AAAAAATCGT CCTCTTTCAT AGCTGGCTCA

1981	TAAACGATTA CAGGCACACC TTTCGCCTTG ATTCGCTTCA TAATACCCTG AATCGAGGAA

2041	GCACGAAAAT TGTCTGAACC ATTCTTCATA ATCAAACGAT AGACGCCAAC AACTTTCGGT

2101	TTACGTGCAA GGATAGAATC GGCAATAAAA TCTTTGCGCG TGCGGTTGGC GTCAACAATT

2161	GCCGAGATCA GGTTATTCGG CACAGACTGG TAATTTGCCA GTAACTGCTT AGTATCTTTC

2221	GGCAGACAAT AACCACCATA ACCGAATGAC GGGTTGTTGT AGTGATTACC GATACGCGGG

2281	TCAAGGCATA CGCCCTCAAT AATCTGGCGT GAATTAAGTC CCAGGCTTTC AGCATAACTA

2341	TCAAGTTCAT TGAAATACGC TACACGCATC GCCAGATAAG TGTTCGCAAA AAGTTTAATC

2401	GCCTCAGCCT CGGTTGAGTC AGTAAACAAT GTTGGTATGT CTTGCTTAAT GGCGCCTTCC

2461	TGTAATAACG CAGCAAAACG TTTAGCGCGT TCAGACTGCT CGCCAATCAC AATGCGTGAT

2521	GGGTGTAAGT TATCATAAAG TGCTTTACCT TCACGCAAAA ACTCAGGCGA AAAGATCACA

2581	TTTTCAATAC CAAAACGTTC TTTAATGGAC TCTGTAAAAC CAACAGGGAT AGTTGATTTT

2641	ATAATCATTA CCGCGTTGGG ATTAATTTCT GTCACATCAC GAATGACCGC TTCCACGCTT

2701	GAGGTATTAA AATAATTTGT TTTCGGATCA TAATCGGTAG GTGTGGCAAT AATAACGTAA

2761	TCGGCATTTT TATACGCGTC ATACTTATCT GTCGTAGCGC GGAAATTGAG ATCTTTAGTC

2821	GCCAGATACT CTTCAATCTC CTTATCAACA AGCGGTGACT GCCTCTTGTT AAGCATGTCC

2881	ACTTTGGCCT GAACGATATC CAGTGCAACC ACTTCGTGGT TTTGCGCAAT CAGAATACCA

2941	TTTGAAAGAC CAACATAACC TGTTCCTGAA ATTGTTATTT TCATTAGCTC TGACTTCTTC

3001	CGGTTAAACA TTTAGAGTGG TCATTAATCC ACCACCACAG CTTCATCTAC TGCGGGATTT

3061	TTAACGCTGA TGTAGATGAA CTGTCAAGGC AGCGATCCTG CTGTGCGGCG CTGTATTATA

3121	TCGCGTTTTT AACTATAAAT TATAAAAAAA GGCCCTAACC TGCCGCTTTG TATAATAAAA

3181	AAGCCCGGAG GGTTTCTCCG GGCCTTGCTT TGATTAATTG ATTTAAATCA GATTAATCCA

3241	GCCATTCGGT ATGGAACACA CCTTCTTTAT CAATGCGCTT ATAAGTATGC GCACCGAAAT

3301	AGTCACGCTG TGCCTGGATC AGGTTCGCAG GCAGAACAGC GGCGCGGTAG CTGTCGTAAT

3361	AGGCAACCGC AGCGGCGAAG GTCGGCACCG GGATACCGTT CTGTACTGCG TAAGCGACGA

3421	CATCGCGCAG CGCCTGCTGG TAGTCATCGG CAATTTGCTT GAAGTAAGGA GCCAGCAACA

3481	GGTTAGCGAT CTGCGGATTT TCGGCATAAG CATCGGTGAT TTTCTGCAGG AACTGCGCAC

3541	GGATGATGCA GCCAGCACGG AAAATCTTCG CGATTTCACC GTAGTTCAGA TCCCAGTTGT

3601	ACTCTTCAGA CGCAGCGCGT AGCTGAGAGA AGCCCTGAGC GTAAGAAACG ATTTTGCCCA

3661	GATACAGCGC ACGGCGAACT TTTTCGATGA ACTCAGCATT GTCGCCAGCT GGCTGCGCTT

3721	GCGGGCCAGA GAGAACTTTA GATGCGGCAA CACGCTGCTC TTTCAGAGAA GAGATATAAC

3781	GTGCAAACAC AGACTCGGTA ATCAGCGACA GCGGTTCGCC GAGATCCAGC GCGCTCTGGC

3841	TGGTCCATTT GCCCGTACCT TTGTTTGCTG CTTCATCCAG AATCACATCA ACCAGGTAGT

3901	TACCCTCTTC ATCTTTTTTG GTGAAGATAT CTTTGGTGAT GTCGATCAGG TAGCTGCTCA

3961	GTTCACCGTT ATTCCACTCG GTAAAGGTCT GCGCCAGTTC TTCGTTGGTG AGGTTCAAGC

4021	CACCTTTAAG CAGAGAATAG GCTTCAGCAA TCAGCTGCAT ATCACCGTAT TCAATACCGT

4081	TGTGAACCAT CTTCACATAA TGACCTGCAC CATCGGCACC AATATAGGTA ACGCACGGTT

4141	CGCCGTCTTC AGCCACAGCG GCGATTTTGG TCAGGATCGG CGCAATCAGT TCATAAGCTT

4201	CTTTCTGCCC ACCAGGCATA ATGGAAGGAC CTTTCAGCGC ACCTTCTTCA CCACCGGAAA

4261	CACCGGTACC GATAAAGTTA AAGCCTTCTG CAGAAAGCTC ACGGTTACGA CGAATGGTGT

4321	CATGGAAGAA GGTGTTACCA CCATCAATGA TGATGTCACC TTTATCGAGG TATGGCTTGA

4381	GGGAATCAAT AGCAGCATCC GTGCCAGCAC CTGCTTTCAC CATTAACAGG ATGCGACGAG

4441	GCGTTTCCAG AGATTCAACA AATTCTTTCA CCGTATAGTA AGGAACCAGT TTCTTGCCTG

4501	GATTTTCGGT AATCACTTCT TCGGTCTTTT CACGGGAACG GTTGAAAATA GAGACGGTAT

4561	AACCACGGCT TTCGATATTG AGCGCAAGGT TGCGCCCCAT CACTGCCATA CCGACGACGC

4621	CGATCTGTTG CTTTGACATT GTTTACTCCT GTCAGGATAC CGCTGGGTGG TATGCGGGTT

4681	ATGCTTAATT ATAGAATATG CCTAATAAAA ATAAATCCAT AACACTTAAT CAGAAAATTA

4741	TTATTATCGA TTCCTAACGA TTGAATACAT CAGCTCCTTT AATTTAGATG GCATTATACG

4801	AAAAAATGTT CTCAACATAG CATTACTTAT TAATTCATTT TTTCGAATAA AACCAATTTT

4861	ATATTGATAA TACAATACTT TATACTCGTA CAATAAATAT GACAATCCAC GTCGAGCCAT

4921	AAGATTACGA CCAGTTCGCA TTTTTAATAA AATATCTGGA AGATTTGCAA ATCTTGCATT

4981	ATGTACAATT AATAGGCTCC ACAATGCAAA ATCTTGAGAT TTTCTGAATG GAGGATAACC

5041	ACCAACAGCT AATACTGTAT TCTTTCTAAA AATTACAGAA GGATGGCTAA CTGCGCTTCG

5101	TTTCCTCGCG AATTTAACTA TTTCTCTATG TTCGAGAGGC ACTTTGCGTG TTGAAATAAA

5161	CTCCTCAGTA ACAGTTTCAA TTTCATCAAT AAAACTGCCA CATACATCTA TTTCTGAATT

5221	ATTAATCATA AAAGAAATTT GTTTCTCAAA CCGATGAGGC AAAGAAATAT CATCAGCATC

5281	CATTCTTGCC ACTAACTCAT TCCTACAAGC CTTTAATCCT TCATTTAAGG CATTAGCCAA

5341	TCCAACATTT CTAGGTAAAG GTACAAATGT TACTATTTTA TTGCCAACAT CATCAATGAA

5401	TGAATTTATA ATATCGATGT GTGTTTGATG GAGTTCTCCA TCTGCAACAA TTACTATTTG

5461	ATCTGGCTTA AGTGTTTGAT CGTGAAAAAT AGAGCGTAGA GCCACCTCAA AAAATTGCGG

5521	TAGATCATTT TTATAAATGC TAATTAAAAC TGAGAATTTT TCTAATCTAT GATTCATTTC

5581	ATTTTACCAC TTCGACCCAT TAAACCGTCA TTAATGCCTT TTAAAAAAAA ATATAACCTT

5641	TTATTACCAT TTGGAAGGAA AATAGGATAT AAAAAAACCT TTCCAATTAA TTTAACCAGA

5701	CTAGAAATTT TCCAGTAGAT GGGTACATAA TTTTTATTTA ATAAAAGAAA GATATTTCGA

5761	GTAGCATAAT AATGACGAAA TGGGCTTGGC AAACCGACAG AAAGAATATT TAAGATCTTA

5821	AATCGCCCAT CTCCAAGTCT ATGTGCAAGT AACGCATTTT TATTCCTAAT TACTTTAAAC

5881	CCAGCAGCTC TTAATCTCCA ACAATATTCA TGGTCTACCG CATCGATAAA AAGCTCATCT

5941	TTCATTCCTC CAACAATCAA CCAACTATTT TTTGGTATTA GACTGCCAGA ACTTAATGTA

6001	CTATCTACCT CATAATAAAC TTCTGTAAGT GGTTTCCCTT TTTTTACCCT TGCTTTATTT

6061	AATTCACCAG TTACTTTATC AAAATCTTGT GAACCAACTA AACCAACATT GACATTTTGT

6121	TTAAGCAATT TTTTGTAACA AGTAAGTAAC TGCTCTACCA TCTTAGGATC AGGAATACTA

6181	TCCTGATCCA TTTGCAATAT AAAATCAGCG CCATTTTCAA AAGCCCATTT CATTCCTATA

6241	CTTTGGGCTT CTGCTATGCC TAAATTATCA TTGAAATTGA ATATTTTTAC ATCGCCTGAA

6301	GAATTTTCAG CATATTTATA ACCATTTGTA GAGTTATTGC AAACGACAAC TTTAGTAACT

6361	TGTCTCAACA ATAATTCAAC CGCATTTTTT AAATCATTAT GTTCTGGGTT GTAAGCAACC

6421	AAAACGGCAT ATACAGTGTC CATCTTCACC TTAAAACCTT CATTTAGCTT TCATCTTTTT

6481	TAGAACATTA CTTAATGTCA CTAATACAAT TATTACAGCA ACATGGTTAG AGTCTAAAAT

6541	ATAAGGATTA GTAATTGCAT AAGAAACATA TAGAAAATAT AGCACACACA ACTCACTGTA

6601	TTTTATGATT TTAATCGTGA GAAGGAGATT AATTAATAAA AACAAAGTAA ATAAAATAAC

6661	GCCAAGTTGA TTTAAAAAAT AAACTGACTG CAATTCATAA TATATATATG CACTATAATC

6721	ACGGATAGGA GTTTGAATTT TGATGACATT ACCCAAACCA GAACCTATAA CAAAATTTGA

6781	TACAGACTCT GTAAGATCAT TAATTAATAC AGTAAACTGA TCCCATCTAA CTCCTAAAGA

6841	AGAATCAGCT CCATTTGATT TCATGATTAT CAACTCAATT GAATATGTAA TAAAAAAAGG

6901	GAGAATCACA GTAAGAAAAA CCCCAAAAAT AATTTTCCTT AATTTAGCGT ATCGTGAGTT

6961	AGATTTAGAA CATAGTATAA TATACATAAA AAACAAGCAT ATCGAAACAA AATATGCAAA

7021	ATTACCAGCC ACTATAGTAC CTATAGCCAG AATAACGGTT ATTGTATTTT TGAATCGATA

7081	ATAGAAATAA TCTTTTATGA CTATATGCAA CATAAAGGCA AATGGAATGA GAGCATTTCC

7141	TTTAATTTGA ACTCTATAGA AACCACTTCC ATATGTATAA ACATCACCAT AATCATTCTC

7201	CAAAAAATAA TGTCTTAGTG CTGAATAATC ACCAATACCA TATGTTTTTG TCATATAAAT

7261	ACTAATGATG GATATAATAA CCGCCTGTAA TACCATTAAA TATAAAAATA TTTTAACAAT

7321	CGAGATGGTT CCATAAGAGC AGAAATAAGC ACATAATATA AATAATATGA TAATATAAAA

7381	CCTAATTATT ATCGCTATAT CGTTACCCTT GATATAGGAA TAAATAAAAT TTATAAAAAG

7441	AGCTAATAGA AATATTAAAA TAACAGGATA GTGATATATT CCGTTTGCAA TTTTCTTTGT

7501	AAATGACATG ATACAAAGAC ATAAAAACCC CTCCATAATC CAACTATATT GAATAAATGG

7561	AAAGCTACGT GTAAGGAAAA ATATAAACCC AAAAAACAAA AGAACACTTA AACTTTTGTC

7621	TTTTGAGTTA TAAAAATCAG AAGTCATGTT TGCACTCTAA TTAGATGGGC TTGAGGAAGT

7681	AATCCCTAAA ATCAATTCGC TATTAATATT TCGTATCAAT TAATAATAAT ATCAAAAAAT

7741	CTAACGATGT TCTTACAGAC CATGCTATTG CGGCTCCAAC AATTCCCCAA TGATAAATAA

7801	AAATATATAA TATGCATAAA TATGGGATAA CTTCGAGCAA ATGAATAATA GCTGTAATTT

7861	TTGATCTTCC ACTAGCCTGA ACTGAAACAA ATGGGATTTG TGCAATGCAA TTAAAAAAGA

7921	AACCTATTGC AAGAATTTTT AATACTATAC CTGGCGTCCC ATGATATGTA GGTCCCATCC

7981	AAGCGGACAT TATAAAATCT GATAAAATAA TTATCAACAT TACAATTGGA AGTATACCAA

8041	TAACCATTAT AAAATATGAT AATATTTTAG TTTGCTTTAC CGATTGCAAT TCTGAACTTA

8101	ATCTTGGAAA AATAGCTCTG GACAACGCAC TTGGTAATAT CGTTAAGCGT TGTATACCTT

8161	CAGACGGAGC AGTATAAAAA GAAACTTTAT CAGCCCCCAC AATGTGTGAA AGAATAAAAC

8221	GATCCATATA TGTCATAATA GGGCTAATAA TATTGCTAAC TGTTATCCAG CTTCCAAAGC

8281	CGATTAATCT TTTAACTGTT ACAATTTTTA CAGACAGCCC AGATGATATT ATTAGTTTTC

8341	GACTAAATAT AAAGGTCACT ATAAGTGATA AGACTCTTGC CATAACTAAA CCATATATAG

8401	CACTTAGTAA TCCTCCATGA AAAAAACAGA AAATCACTGG TAATCCAGCC ACAAAAGAGT

8461	TGTTAATTGA TTTTATTAAA TTTACTTTTC TGAACTTTTC CATCCCCTCA AAAATCCCCA

8521	ACCAGACTTG GTTTAACAAG TATAAGGGTA TGGTAGCTGA AATAATATAT ATTGCTTTGA

8581	CAGATTCTAC AACATGATTC GCGTTAATGT TTAATAATTT AACAATTACA TTGCTACTCA

8641	AAAATAGTAC ACTACCGCCA ATCAAGCCCA ATATAGTTAG AATTACCGTT GAAGTTGAAA

8701	TGATCGCTCT TAATTCTTTA TGAACATTTT TATATATTGA TACTTCTCTT ATAACAGCTC

8761	TGGTCAATCC AGCATCAAAA ATACTTGCAT ATCCAACTAA GGCAATAGCT AACGTAAAAA

8821	GGCCAAATTG CTCGGTCCCT AGAATTCTAG ACAGTATACC TAACGCAGGA ATTGCTATTA

8881	ATGATGGTAT AATATACCCA CTTATATTCC ATAAAGTATT CTTTACAATA CTCACAAAAA

8941	TAATTCCTTC ATGTTATGCA ATTCTTTAGC CCTTGCATCT TTAATCGATA AAATATAATT

9001	ATTATGTTCT ATCGTCGGCC ATTTTATGCT CAGAATAGGA TCATTCCATA CAATCCCTCT

9061	ATCACTATCA GGATGATAAT AGTTCGTCGT TTTATATAAA AATTCCGCAG TCTCGCTCAG

9121	CACCAAAAAA CCATGTGCAA ATCCCTCAGG GATCCACAAT TGCCGCTTAT TCTCAGCAGA

9181	TAAATTCACC CCAACCCATT TACCAAAGGT AGGCGACGAT TTACGAATAT CAACAGCTAC

9241	ATCAAAAACC TCACCAACAA CGCAACGTAC CAGTTTCCCT TGCGCATAAG GTTCTAACTG

9301	ATAATGCAGC CCGCGTAAAA CACCTTTACT AGACTTCGAA TGGTTATCCT GAACAAATTC

9361	AACCTTACGT CCTACAGCTT CTTCGAAAAC TTTCTGATTA AAGCTTTCCA TAAAGAAACC

9421	ACGCTCATCA CCAAAAACTT TCGGCTCGAA AATTAACACA TCAGGAATTT CTGTTTTAAT

9481	TACGTTCATT TTATTAATAA CCTTTAATCA TTTTCAGCAG ATACTGTCCA TAAGCATTTT

9541	TTTTCAGCGC CTCCGCTAAT GCTTTCACCT GTTCAGCATC AATAAACCCT TTACGGTAAG

9601	CAATTTCTTC TGGGCAGGAA ACCTTTAGTC CCTGGCGCTC TTCAATGGTG GCAATGAAGT

9661	TGCTTGCTTC AATAAGACTC TGATGTGTCC CCGTATCCAG CCATGCATAA CCACGCCCCA

9721	TCATGGCAAC GGATAAACGC CCCTGTTCCA TATAAATACG GTTAATATCG GTAATTTCCA

9781	GTTCACCACG GGCAGAAGGC TTAAGGTTTT TCGCCATTTC GACAACGTCG TTATCATAGA

9841	AATAAAGCCC GGTTACCGCA TAATTACTTT TTGGTTGTAG CGGTTTTTCT TCCAGGCTTA

9901	TTGCCGTACC GTTTTTATCA AACTCAACGA CGCCGTAGCG TTCAGGATCA TTAACGTGAT

9961	AGGCAAATAC CGTTGCACCA CTTTCTTTGT TAACAGCGAC ATCCATTAAC TTCGGCAGAT

10021	CATGACCGTA GAAGATATTA TCACCAAGAA CCAAAGCACA ATCATCACCA CCGATAAACT

10081	CTTCACCGAT AATAAACGCC TGCGCAAGCC CATCTGGAGT CGGTTGCACT TTGTACTGAA

10141	GATTTAGCCC CCACTGGCTA CCGTCACCTA GCAGTTGTTG AAAACGAGGA GTATCCTGTG

10201	GCGTACTAAT AATCAGAATA TCGCGAATAC CCGCCAACAT CAGTGTAGAG AGCGGGTAAT

10261	AGATCATCGG CTTATCATAA ATAGGTAATA GCTGTTTACT GACAGCCATA GTCACAGGAT

10321	AAAGACGTGT ACCAGAACCA CCCGCTAAAA TAATACCTTT ACGCGTTTTC ATTTCATCAT

10381	TCCTTTTAAT TCATCTTGCT CCACCATCAC GAACAAGATG CAAAAACTAT TAAATTGCTG

10441	TAGTCGTAAT TAATTCGTTG AGCATTCGTT TCACACCAAC CTGCCAGTCA GGCAAGACAA

10501	GCGCAAAGTT CTGCTGAAAT TTTTCTGTAT TAAGGCGAGA GTTATGTGGA CGACGAGCTG

10561	GTGTAGGATA GGCTGTTGTT GGTACTGCGT TGAGCTTGTT GAGTGCAAGG GGAATACCTG

10621	CTTTGCGCGC CTCTTCAAAA ACCAGCGCAG CATAATCGTG CCAGGTTGTG GTACCACTGG

10681	CTACCAGATG GTACAAACCT GCGACTTCCG GTTTATTCAG TGCCACACGA ATAGCATGTG

10741	CCGTACAATC AGCCAGCAGC TCAGCACCTG TTGGCGCACC AAATTGATCA TTTATCACAG

10801	CCAGTTCTTC GCGCTCTTTT GCCAGACGCA ACATCGTTTT GGCGAAGTTA TTTCCTTTAG

10861	CTGCGTATAC CCAGCTGGTA CGGAAAATAA GATGCTTCGC GCAATGTTCC TGTAACGCTT

10921	TTTCTCCGGC TAACTTGGTT TCACCGTAAA CATTTAGCGG TGCGGTTGCA TCCGTCTCCA

10981	GCCATGGCGT GTCGCCATTT CCAGGGAATA CGTAGTCAGT TGAGTAATGA ATTACCCAAG

11041	CCCCAACTTC ATTAGCCTCT TTTGCAATTG ATTCAACACT AGTCGCATTG AGTAATTGTG

11101	CAAATTCGGG TTCTGACTCA GCCTTATCTA CTGCGGTGTG AGCCGCAGCA TTAACAATAA

11161	CATCAGGTCG AATTCTTTTG ACTGTTTCAG CTACACCTTC AGGATTACTA AAATCACCAC

11221	AATAATCAGT GGAGTGAACA TCAAGAGCAA TCAAATTACC CAAAGGTGCC AGAGCACGCT

11281	GTAGTTCCCA ACCTACCTGC CCTGTTTTGC CGAAAAGGAG GATATTCATT ACTGGCGGCC

11341	CTCATAGTTC TGTTCAATCC ACGATTGATA AGCACCACTT TTCACATTAT CAACCCATTT

11401	TGTATTGGAC AGGTACCATT CCAATGTCTT CCGAATCCCG CTCTCAAACG TTTCCTGCGG

11461	TTTCCAGCCC AATTCGCGGC TAATCTTCTC TGCATCAATC GCATAACGGC GATCGTGTCC

11521	CGGGCGATCG GCAACATAAG TAATTTGCTC GCGGTAAGAT TTCTCTTTCG GTACAATCTC

11581	ATCCAGCAAA TCACAAATAG TGAGCACTAC ATCGATGTTT TTCTTTTCGT TGTGTCCACC

11641	AATGTTATAA GTTTCACCCG CTTTACCTTC GGTTACGACG GTATATAACG CACGCGCATG

11701	ATCTTCAACA TACAGCCAGT CACGAATTTG ATCCCCTTTG CCATAAATAG GTAATGCCTT

11761	ACCTTCCAGA GCATTCAGAA TAACCAATGG AATCAATTTT TCCGGGAAAT GATAAGGACC

11821	ATAATTATTA GAGCAATTAG TCACAATGGT TGGTAAACCA TAGGTACGTT TCCACGCGCG

11881	GACTAAATGA TCGCTGGATG CTTTTGAAGC GGAATAAGGG CTGCTTGGCG CGTAAGCTGT

11941	TGTCTCTGTA AATAAGGGTA ATTCTTCTGT ATTATTTACC TCGTCAGGAT GAGGCAAATC

12001	ACCATAGACT TCGTCAGTAG AAATATGATG AAAACGGAAT CTAGTTTTCT TGTCGCTATC

12061	AAGAGCAGAC CAATAATTGC GAGCGGCTTC CAAAAGGACA TATGTACCAA CAATATTGGT

12121	TTCAATAAAT GCCGCAGGAC CTGTAATTGA ACGGTCAACA TGGCTTTCAG CAGCCAGGTG

12181	CATCACTGCA TCTGGCTGAT GCTGAGCAAA AATCCGTGCC ATTGCAGCTG CATCGCAAAT

12241	ATCCGCATGT TCAAAAACAT AGCGTTCAGA ATCAGAAACA TCAGCAAGTG ATTCCAGGTT

12301	TCCGGCGTAC GTTAATTTAT CGACATTAAC AACACTATCC TGCGTATTAT TTATAATGTG

12361	ACGAACTACA GCAAAACCAA TAAATCCTGC GCCACCAGTA ACAAGTATTT TCACCTAATT

12421	TATTCCATAT TGCTTCAGAG CATGCTGTGA AATAAGCGGC TCTCAGTTTG ATTAATAGAA

12481	GTATTAATGC ACGCTACCGC CCCTGGCTTT ACAGCTACCA GAGCACTGCA TGCATGCCTA

12541	CGATGTGACG AGCGTTACCC ACTCGCGCTA AACCCGAAAA ATTCAAAAGC TAATTGTCTT

12601	ACCAATCCGC TCTGGAAACA AGGAAAATCC TGGAAAACTT TGACTAAAAT CCTATTGCTA

12661	ACTCGTTGTT ATTCTGATTG TTTATATAAA ACAACGGCAG GAATATTCGC AACAAATTAC

12721	TTTCACCACG AATCTTCACT GCCGTTATAA TTTTCTTATC AACCGTTACA TCCGGTCAGA

12781	TTTTCATTAT TCGCTTAACA GCTTCTCAAT ACCTTTACGG AACTTCGCCC CTTCTTTCAG

12841	GTTGCGCAGC CCATACTTCA CAAACGCCTG CATATAGCCC ATTTTTTTAC CGCAGTCGTA

12901	GCTGTCGCCG GTCATCAGCA TTGCATCAAC GGACTGTTTT TTCGCCAGCT CGGCAATGGC

12961	ATCAGTCAGC TGAATACGTC CCCATGCACC AGGCTGAGTA CGTTCAAGTT CCGGCCAAAT

13021	ATCGGCAGAA AGCACATAGC GACCAACGGC CATGATGTCT GAGTCCAGCG TCTGCGGCTG

13081	ATCCGGTTTT TCGATAAATT CAACAATGCG GCTGACTTTA CCTTCGCGAT CCAGCGGTTC

13141	TTTGGTCTGG ATGACGGAGT ATTCAGAGAG GTCACCCGGC ATACGTTTTG CCAGCACCTG

13201	GCTACGGCCC GTTTCATTGA AGCGCGCAAT CATGGCAGCA AGGTTGTAGC GTAGCGGGTC

13261	GGCGCTGGCG TCGTCGATCA CAACGTCTGG CAGCACCACG ACAAATGGAT TGTCACCAAT

13321	GGCGGGTCGT GCACACAAAA TGGAGTGACC TAAACCTAAA GGTTCGCCCT GACGCACGTT

13381	CATAATAGTC ACGCCCGGCG GGCAGATAGA TTGCACTTCC GCCAGTAGTT GACGCTTCAC

13441	GCGCTGCTCA AGGAGAGATT CTAATTCATA AGAGGTGTCG AAGTGGTTTT CGACCGCGTT

13501	CTTGGACGCA TGAGTTACCA GGAGGATTTC TTTGATCCCT GCAGCCACAA TCTCGTCAAC

13561	AATGTACTGA ATCATTGGCT TGTCGACGAT CGGTAGCATC TCTTTGGGTA TCGCCTTAGT

13621	GGCAGGCAAC ATATGCATCC CAAGACCCGC TACCGGTATA ACTGCTTTTA AATTCGTCAT

13681	TATTTTCCTA CCTCTAAGGG GCTGATAGTG CGTAAATTAT TGTCATAGGT TAGCCAAACG

13741	GTATGGCTAT ATACCAAGCA TAACTTTGAT TAAACCTTAC GATAACACTA CACACCATCA

13801	GCATCTGGGT TACTCGGATT ACTCGGAAAT CCACATACTG ATAATTTAAT CAGTACCTCT

13861	TTCCGAATAA TCGTAGTCCA ACCTGGTCCT TTTTTCTCTG ACTCGTCTGC ATTACTCAGA

13921	AACAAACGTT ATGTCGTCTT TTTTGGCATG GACGAATTCA TACTGCAGAG TTCGATCCAG

13981	ACCTTGCGAC AGCGTATACG GTGCAACAAA ACCTGAAGAA TGCACTTTCG TTGCGTCAAA

14041	CTGTGTTGTT GCGCAGAATT TTTTCACGCG CACAGAGCTG ACAGCGTATT TTTTGCCCGT

14101	AATTTTGCTC AGGATATCAA AGCAATATCC ACCCAGCATT CCTAGTGGGT AAGGCAAGTG

14161	CATAGAAGGG ATCTTTTTGT TCAGGCTTTG TTCAACTTCA GCAACCAACT GGTTCATGTT

14221	CAGGTCTGGC TTATCAACAT AGTTATAAAC CTCATAACCT GCGGCAACAT TCTTCAGTTT

14281	GTACTTGATA AACTCAACAA TGTTTCCAAC ATAAGCCATG GACTTATAGT TAGTCCCTGC

14341	GCCCACCATC ATAAACTTGC CGCCAGCGAT CTGTTTCAGC AAGTTATAGA CGTTACCGCG

14401	GTTGCGTTCA CCGAAGATAA CGGTAGGACG GATGATGGTT AATGAACGTT CTGTTGGTGC

14461	TTTGTTATAC CATTCACGCA GCACTTCCTC TGCCTGCCAC TTACTTTTGC CGTAGTGGTT

14521	GAAAGGGTCG TGTGGATGGT TTTCGTCAGG GTTGTGTTTG TTCAAACCAT AAACAGCAAC

14581	GGAACTGGTA AAGATGATAT TTTTAACGCC ATTTTTTTCC ATGGCCGCCA GCACATTGCG

14641	GGTACCCTGA ACGTTGACAT CATAATAGAG AGAAGTAGGG CTGACGTCAT CGCGGTGTTC

14701	CGCTGCCAGT AGTACAACAG TGTCAAAACC GGCTAACGCC TGGTCGAGTG CCTGTTGATC

14761	ACGAACATCA CCAATCTGTG TGATTTCTGG ATAAAAGTGG CTCTGCCGTT TGTCCAGGTT

14821	CTTGATATTA AAGTCAGCAA TTGCCGTTTC AAGTAGTCGG GTTCCTACGA ATCCGGAAGC

14881	TCCTATGAGC AAAACGTTAT TGTTCATAAA TCACTTTAGT CTGGTTGTTA CGTAAGAAAC

14941	ACAAGATAAA GATGAGTACC TTCCCTGAGT AGTCAATGCT GCCCAGCCCC AGCTTTAACA

15001	GTTAGTGTGA GGATTATAAT CTTTTAGAAC ATTATATCCA GTAAGTTTAT GAATGGTCGC

15061	AAATCTACTC TCTCCGTTCC GGCAATCTAA AGTTAATGCT AGCGACGTCG TGGGATCCTC

15121	TAGAGTCGAC CTGCAGGCAT GCAAGCTTGA GTATTCTATA GTCTCACCTA AATAGCTTGG

15181	CGTAATCATG GTCATAGCTG TTTCCTGTGT GAAATTGTTA TCCGCTCACA ATTCCACACA

15241	ACATACGAGC CGGAAGCATA AAGTGTAAAG CCTGGGGTGC CTAATGAGTG AGCTAACTCA

15301	CATTAATTGC GTTGCGCTCA CTGCCCGCTT TCCAGTCGGG AAACCTGTCG TGCCAGCTGC

15361	ATTAATGAAT CGGCCAACGC GAACCCCTTG CGGCCGCCCG GGCCGTCGAC CAATTCTCAT

15421	GTTTGACAGC TTATCATCGA ATTTCTGCCA TTCATCCGCT TATTATCACT TATTCAGGCG

15481	TAGCAACCAG GCGTTTAAGG GCACCAATAA CTGCCTTAAA AAAATTACGC CCCGCCCTGC

15541	CACTCATCGC AGTACTGTTG TAATTCATTA AGCATTCTGC CGACATGGAA GCCATCACAA

15601	ACGGCATGAT GAACCTGAAT CGCCAGCGGC ATCAGCACCT TGTCGCCTTG CGTATAATAT

15661	TTGCCCATGG TGAAAACGGG GGCGAAGAAG TTGTCCATAT TGGCCACGTT TAAATCAAAA

15721	CTGGTGAAAC TCACCCAGGG ATTGGCTGAG ACGAAAAACA TATTCTCAAT AAACCCTTTA

15781	GGGAAATAGG CCAGGTTTTC ACCGTAACAC GCCACATCTT GCGAATATAT GTGTAGAAAC

15841	TGCCGGAAAT CGTCGTGGTA TTCACTCCAG AGCGATGAAA ACGTTTCAGT TTGCTCATGG

15901	AAAACGGTGT AACAAGGGTG AACACTATCC CATATCACCA GCTCACCGTC TTTCATTGCC

15961	ATACGAAATT CCGGATGAGC ATTCATCAGG CGGGCAAGAA TGTGAATAAA GGCCGGATAA

16021	AACTTGTGCT TATTTTTCTT TACGGTCTTT AAAAAGGCCG TAATATCCAG CTGAACGGTC

16081	TGGTTATAGG TACATTGAGC AACTGACTGA AATGCCTCAA AATGTTCTTT ACGATGCCAT

16141	TGGGATATAT CAACGGTGGT ATATCCAGTG ATTTTTTTCT CCATTTTAGC TTCCTTAGCT

16201	CCTGAAAATC TCGATAACTC AAAAAATACG CCCGGTAGTG ATCTTATTTC ATTATGGTGA

16261	AAGTTGGAAC CTCTTACGTG CCGATCAACG TCTCATTTTC GCCAAAAGTT GGCCCAGGGC

16321	TTCCCGGTAT CAACAGGGAC ACCAGGATTT ATTTATTCTG CGAAGTGATC TTCCGTCACA

16381	GGTATTTATT CGCGATAAGC TCATGGAGCG GCGTAACCGT CGCACAGGAA GGACAGAGAA

16441	AGCGCGGATC TGGGAAGTGA CGGACAGAAC GGTCAGGACC TGGATTGGGG AGGCGGTTGC

16501	CGCCGCTGCT GCTGACGGTG TGACGTTCTC TGTTCCGGTC ACACCACATA CGTTCCGCCA

16561	TTCCTATGCG ATGCACATGC TGTATGCCGG TATACCGCTG AAAGTTCTGC AAAGCCTGAT

16621	GGGACATAAG TCCATCAGTT CAACGGAAGT CTACACGAAG GTTTTTGCGC TGGATGTGGC

16681	TGCCCGGCAC CGGGTGCAGT TTGCGATGCC GGAGTCTGAT GCGGTTGCGA TGCTGAAACA

16741	ATTATCCTGA GAATAAATGC CTTGGCCTTT ATATGGAAAT GTGGAACTGA GTGGATATGC

16801	TGTTTTTGTC TGTTAAACAG AGAAGCTGGC TGTTATCCAC TGAGAAGCGA ACGAAACAGT

16861	CGGGAAAATC TCCCATTATC GTAGAGATCC GCATTATTAA TCTCAGGAGC CTGTGTAGCG

16921	TTTATAGGAA GTAGTGTTCT GTCATGATGC CTGCAAGCGG TAACGAAAAC GATTTGAATA

16981	TGCCTTCAGG AACAATAGAA ATCTTCGTGC GGTGTTACGT TGAAGTGGAG CGGATTATGT

17041	CAGCAATGGA CAGAACAACC TAATGAACAC AGAACCATGA TGTGGTCTGT CCTTTTACAG

17101	CCAGTAGTGC TCGCCGCAGT CGAGCGACAG GGCGAAGCCC TCGGCTGGTT GCCCTCGCCG

17161	CTGGGCTGGC GGCCGTCTAT GGCCCTGCAA ACGCGCCAGA AACGCCGTCG AAGCCGTGTG

17221	CGAGACACCG CGGCCGGCCG CCGGCGTTGT GGATACCTCG CGGAAAACTT GGCCCTCACT

17281	GACAGATGAG GGGCGGACGT TGACACTTGA GGGGCCGACT CACCCGGCGC GGCGTTGACA

17341	GATGAGGGGC AGGCTCGATT TCGGCCGGCG ACGTGGAGCT GGCCAGCCTC GCAAATCGGC

17401	GAAAACGCCT GATTTTACGC GAGTTTCCCA CAGATGATGT GGACAAGCCT GGGGATAAGT

17461	GCCCTGCGGT ATTGACACTT GAGGGGCGCG ACTACTGACA GATGAGGGGC GCGATCCTTG

17521	ACACTTGAGG GGCAGAGTGC TGACAGATGA GGGGCGCACC TATTGACATT TGAGGGGCTG

17581	TCCACAGGCA GAAAATCCAG CATTTGCAAG GGTTTCCGCC CGTTTTTCGG CCACCGCTAA

17641	CCTGTCTTTT AACCTGCTTT TAAACCAATA TTTATAAACC TTGTTTTTAA CCAGGGCTGC

17701	GCCCTGTGCG CGTGACCGCG CACGCCGAAG GGGGGTGCCC CCCCTTCTCG AACCCTCCCG

17761	GTCGAGTGAG CGAGGAAGCA CCAGGGAACA GCACTTATAT ATTCTGCTTA CACACGATGC

17821	CTGAAAAAAC TTCCCTTOGG GTTATCCACT TATCCACGGG GATATTTTTA TAATTATTTT

17881	TTTTATAGTT TTTAGATCTT CTTTTTTAGA GCGCCTTGTA GGCCTTTATC CATGCTGGTT

17941	CTAGAGAAGG TGTTGTGACA AATTGCCCTT TCAGTGTGAC AAATCACCCT CAAATGACAG

18001	TCCTGTCTGT GACAAATTGC CCTTAACCCT GTGACAAATT GCCCTCAGAA GAAGCTGTTT

18061	TTTCACAAAG TTATCCCTGC TTATTGACTC TTTTTTATTT AGTGTGACAA TCTAAAAACT

18121	TGTCACACTT CACATGGATC TGTCATGGCG GAAACAGCGG TTATCAATCA CAAGAAACGT

18181	AAAAATAGCC CGCGAATCGT CCAGTCAAAC GACCTCACTG AGGCGGCATA TAGTCTCTCC

18241	CGGGATCAAA AACGTATGCT GTATCTGTTC GTTGACCAGA TCAGAAAATC TGATGGCACC

18301	CTACAGGAAC ATGACGGTAT CTGCGAGATC CATGTTGCTA AATATGCTGA AATATTCGGA

18361	TTGACCTCTG CGGAAGCCAG TAAGGATATA CGGCAGGCAT TGAAGAGTTT CGCGGGGAAG

18421	GAAGTGGTTT TTTATCGCCC TGAAGAGGAT GCCGGCGATG AAAAAGGCTA TGAATCTTTT

18481	CCTTGGTTTA TCAAACGTGC GCACAGTCCA TCCAGAGGGC TTTACAGTGT ACATATCAAC

18541	CCATATCTCA TTCCCTTCTT TATCGGGTTA CAGAACCGGT TTACGCAGTT TCGGCTTAGT

18601	GAAACAAAAG AAATCACCAA TCCGTATGCC ATGCGTTTAT ACGAATCCCT GTGTCAGTAT

18661	CGTAAGCCGG ATGGCTCAGG CATCGTCTCT CTGAAAATCG ACTGGATCAT AGAGCGTTAC

18721	CAGCTGCCTC AAAGTTACCA GCGTATGCCT GACTTCCGCC GCCGCTTCCT GCAGGTCTGT

18781	GTTAATGAGA TCAACAGCAG AACTCCAATG CGCCTCTCAT ACATTGAGAA AAAGAAAGGC

18841	CGCCAGACGA CTCATATCGT ATTTTCCTTC CGCGATATCA CTTCCATGAC GACAGGATAG

18901	TCTGAGGGTT ATCTGTCACA GATTTGAGGG TGGTTCGTCA CATTTGTTCT GACCTACTGA

18961	GGGTAATTTG TCACAGTTTT GCTGTTTCCT TCAGCCTGCA TGGATTTTCT CATACTTTTT

19021	GAACTGTAAT TTTTAAGGAA GCCAAATTTG AGGGCAGTTT GTCACAGTTG ATTTCCTTCT

19081	CTTTCCCTTC GTCATGTGAC CTGATATCGG GGGTTAGTTC GTCATCATTG ATGAGGGTTG

19141	ATTATCACAG TTTATTACTC TGAATTGGCT ATCCGCGTGT GTACCTCTAC CTGGAGTTTT

19201	TCCCACGGTG GATATTTCTT CTTGCGCTGA GCGTAAGAGC TATCTGACAG AACAGTTCTT

19261	CTTTGCTTCC TCGCCAGTTC GCTCGCTATG CTCGGTTACA CGGCTGCGGC GAGCGCTAGT

19321	GATAATAAGT GACTGAGGTA TGTGCTCTTC TTATCTCCTT TTGTAGTGTT GCTCTTATTT

19381	TAAACAACTT TGCGGTTTTT TGATGACTTT GCGATTTTGT TGTTGCTTTG CAGTAAATTG

19441	CAAGATTTAA TAAAAAAACG CAAAGCAATG ATTAAAGGAT GTTCAGAATG AAACTCATGG

19501	AAACACTTAA CCAGTGCATA AACGCTGGTC ATGAAATGAC GAAGGCTATC GCCATTGCAC

19561	AGTTTAATGA TGACAGCCCG GAAGCGAGGA AAATAACCCG GCGCTGGAGA ATAGGTGAAG

19621	CAGCGGATTT AGTTGGGGTT TCTTCTCAGG CTATCAGAGA TGCCGAGAAA GCAGGGCGAC

19681	TACCGCACCC GGATATGGAA ATTCGAGGAC GGGTTGAGCA ACGTGTTGGT TATACAATTG

19741	AACAAATTAA TCATATGCGT GATGTGTTTG GTACGCGATT GCGACGTGCT GAAGACGTAT

19801	TTCCACCGGT GATCGGGGTT GCTGCCCATA AAGGTGGCGT TTACAAAACC TCAGTTTCTG

19861	TTCATCTTGC TCAGGATCTG GCTCTGAAGG GGCTACGTGT TTTGCTCGTG GAAGGTAACG

19921	ACCCCCAGGG AACAGCCTCA ATGTATCACG GATGGGTACC AGATCTTCAT ATTCATGCAG

19981	AAGACACTCT CCTGCCTTTC TATCTTGGGG AAAAGGACGA TGTCACTTAT GCAATAAAGC

20041	CCACTTGCTG GCCGGGGCTT GACATTATTC CTTCCTGTCT GGCTCTGCAC CGTATTGAAA

20101	CTGAGTTAAT GGGCAAATTT GATGAAGGTA AACTGCCCAC CGATCCACAC CTGATGCTCC

20161	GACTGGCCAT TGAAACTGTT GCTCATGACT ATGATGTCAT AGTTATTGAC AGCGCGCCTA

20221	ACCTGGGTAT CGGCACGATT AATGTCGTAT GTGCTGCTGA TGTGCTGATT GTTCCCACGC

20281	CTGCTGAGTT GTTTGACTAC ACCTCCGCAC TGCAGTTTTT CGATATGCTT CGTGATCTGC

20341	TCAAGAACGT TGATCTTAAA GGGTTCGAGC CTGATGTACG TATTTTGCTT ACCAAATACA

20401	GCAATAGTAA TGGCTCTCAG TCCCCGTGGA TGGAGGAGCA AATTCGGGAT GCCTGGGGAA

20461	GCATGGTTCT AAAAAATGTT GTACGTGAAA CGGATGAAGT TGGTAAAGGT CAGATCCGGA

20521	TGAGAACTGT TTTTGAACAG GCCATTGATC AACGCTCTTC AACTGGTGCC TGGAGAAATG

20581	CTCTTTCTAT TTGGGAACCT GTCTGCAATG AAATTTTCGA TCGTCTGATT AAACCACGCT

20641	GGGAGATTAG ATAATGAAGC GTGCGCCTGT TATTCCAAAA CATACGCTCA ATACTCAACC

20701	GGTTGAAGAT ACTTCGTTAT CGACACCAGC TGCCCCGATG GTGGATTCGT TAATTGCGCG

20761	CGTAGGAGTA ATGGCTCGCG GTAATGCCAT TACTTTGCCT GTATGTGGTC GGGATGTGAA

20821	GTTTACTCTT GAAGTGCTCC GGGGTGATAG TGTTGAGAAG ACCTCTCGGG TATGGTCAGG

20881	TAATGAACGT GACCAGGAGC TGCTTACTGA GGACGCACTG GATGATCTCA TCCCTTCTTT

20941	TCTACTGACT GGTCAACAGA CACCGGCGTT CGGTCGAAGA GTATCTGGTG TCATAGAAAT

21001	TGCCGATGGG AGTCGCCGTC GTAAAGCTGC TGCACTTACC GAAAGTGATT ATCGTGTTCT

21061	GGTTGGCGAG CTGGATGATG AGCAGATGGC TGCATTATCC AGATTGGGTA ACGATTATCG

21121	CCCAACAAGT GCTTATGAAC GTGGTCAGCG TTATGCAAGC CGATTGCAGA ATGAATTTGC

21181	TGGAAATATT TCTGCGCTGG CTGATGCGGA AAATATTTCA CGTAAGATTA TTACCCGCTG

21241	TATCAACACC GCCAAATTGC CTAAATCAGT TGTTGCTCTT TTTTCTCACC CCGGTGAACT

21301	ATCTGCCCGG TCAGGTGATG CACTTCAAAA AGCCTTTACA GATAAAGAGG AATTACTTAA

21361	GCAGCAGGCA TCTAACCTTC ATGAGCAGAA AAAAGCTGGG GTGATATTTG AAGCTGAAGA

21421	AGTTATCACT CTTTTAACTT CTGTGCTTAA AACGTCATCT GCATCAAGAA CTAGTTTAAG

21481	CTCACGACAT CAGTTTGCTC CTGGAGCGAC AGTATTGTAT AAGGGCGATA AAATGGTGCT

21541	TAACCTGGAC AGGTCTCGTG TTCCAACTGA GTGTATAGAG AAAATTGAGG CCATTCTTAA

21601	GGAACTTGAA AAGCCAGCAC CCTGATGCGA CCACGTTTTA GTCTACGTTT ATCTGTCTTT

21661	ACTTAATGTC CTTTGTTACA GGCCAGAAAG CATAACTGGC CTGAATATTC TCTCTGGGCC

21721	CACTGTTCCA CTTGTATCGT CGGTCTGATA ATCAGACTGG GACCACGGTC CCACTCGTAT

21781	CGTCGGTCTG ATTATTAGTC TGGGACCACG GTCCCACTCG TATCGTCGGT CTGATTATTA

21841	GTCTGGGACC ACGGTCCCAC TCGTATCGTC GGTCTGATAA TCAGACTGGG ACCACGGTCC

21901	CACTCGTATC GTCGGTCTGA TTATTAGTCT GGGACCATGG TCCCACTCGT ATCGTCGGTC

21961	TGATTATTAG TCTGGGACCA CGGTCCCACT CGTATCGTCG GTCTGATTAT TAGTCTGGAA

22021	CCACGGTCCC ACTCGTATCG TCGGTCTGAT TATTAGTCTG GGACCACGGT CCCACTCGTA

22081	TCGTCGGTCT GATTATTAGT CTGGGACCAC GATCCCACTC GTGTTGTCGG TCTGATTATC

22141	GGTCTGGGAC CACGGTCCCA CTTGTATTGT CGATCAGACT ATCAGCGTGA GACTACGATT

22201	CCATCAATGC CTGTCAAGGG CAAGTATTGA CATGTCGTCG TAACCTGTAG AACGGAGTAA

22261	CCTCGGTGTG CGGTTGTATG CCTGCTGTGG ATTGCTGCTG TGTCCTGCTT ATCCACAACA

22321	TTTTGCGCAC GGTTATGTGG ACAAAATACC TGGTTACCCA GGCCGTGCCG GCACGTTAAC

22381	CGGGCTGCAT CCGATGCAAG TGTGTCGCTG TCGACGAGCT CGCGAGCTCG GACATGAGGT

22441	TGCCCCGTAT TCAGTGTCGC TGATTTGTAT TGTCTGAAGT TGTTTTTACG TTAAGTTGAT

22501	GCAGATCAAT TAATACGATA CCTGCGTCAT AATTGATTAT TTGACGTGGT TTGATGGCCT

22561	CCACGCACGT TGTGATATGT AGATGATAAT CATTATCACT TTACGGGTCC TTTCCGGTGA

22621	TCCGACAGGT TACGGGGCGG CGACCTCGCG GGTTTTCGCT ATTTATGAAA ATTTTCCGGT

22681	TTAAGGCGTT TCCGTTCTTC TTCGTCATAA CTTAATGTTT TTATTTAAAA TACCCTCTGA

22741	AAAGAAAGGA AACGACAGGT GCTGAAAGCG AGCTTTTTGG CCTCTGTCGT TTCCTTTCTC

22801	TGTTTTTGTC CGTGGAATGA ACAATGGAAG TCCGAGCTCA TCGCTAATAA CTTCGTATAG

22861	CATACATTAT ACGAAGTTAT ATTCGAT

Claims

The invention claimed is:

1. A composition comprising a bioconjugate, said bioconjugate comprising a carrier protein linked to an oligosaccharide or polysaccharide, wherein said oligosaccharide or polysaccharide comprises N-acetylgalactosamine at the reducing terminus, and wherein said carrier protein comprises the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline; and

a recombinant prokaryotic host cell that comprises

(a) a heterologous nucleic acid encoding an epimerase that synthesizes N-acetylgalactosamine on undecaprenyl pyrophosphate, wherein said epimerase comprises the amino acid sequence of SEQ ID NO. 2;

(b) a heterologous nucleic acid encoding an oligosaccharyl transferase; and

(c) a heterologous nucleic acid encoding said carrier protein.

2. The composition of claim 1, wherein said carrier protein is linked to an oligosaccharide.

3. The composition of claim 1, wherein said carrier protein is linked to a polysaccharide.

4. The composition of claim 1, wherein said oligosaccharide or polysaccharide is from a Gram-negative bacterium.

5. The composition of claim 1, wherein said oligosaccharide or polysaccharide is from E. coli.

6. The composition of claim 5, wherein said oligosaccharide or polysaccharide is from E. coli 0157.

7. The composition of claim 1, wherein said oligosaccharide or polysaccharide is from Shigella flexneri.

8. The composition of claim 7, wherein said oligosaccharide or polysaccharide is from Shigella flexneri 6.

9. The composition of claim 1, wherein said oligosaccharide or polysaccharide comprises a structure:

10. The composition of claim 1, wherein said oligosaccharide or polysaccharide comprises a structure, α-D-PerNAc-α-L-Fuc-β-D-Glc-α-D-GalNAc.

11. The composition of claim 1, wherein said carrier protein has been modified to comprise the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline.

12. The composition of claim 4, wherein said carrier protein has been modified to comprise the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline.

13. The composition of claim 5, wherein said carrier protein has been modified to comprise the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline.

14. The composition of claim 6, wherein said carrier protein has been modified to comprise the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline.

15. The composition of claim 7, wherein said carrier protein has been modified to comprise the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline.

16. The composition of claim 8, wherein said carrier protein has been modified to comprise the amino acid sequence D/E-X-N-Z-S/T (SEQ ID NO:31), wherein X and Z can be any natural amino acid except proline.

17. The composition of claim 1, wherein said carrier protein is P. aeruginosa exoprotein that has been modified to comprise the amino acid sequence D/E-X-N-ZSIT, wherein X and Z can be any natural amino acid except proline.

18. The composition of claim 1, wherein said carrier protein is the Campylobacter AcrA protein.

19. The composition of claim 1, wherein said nucleic acid encoding an oligosaccharyl transferase encodes the oligosaccharyl transferase from Campylobacter jejuni.

20. The composition of claim 1, wherein said nucleic acid encoding an oligosaccharyl transferase is heterologous to said host cell.