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US7235401B2 - Method for determining cell cycle position - Google Patents

Method for determining cell cycle position Download PDF

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US7235401B2
US7235401B2 US10/491,762 US49176204A US7235401B2 US 7235401 B2 US7235401 B2 US 7235401B2 US 49176204 A US49176204 A US 49176204A US 7235401 B2 US7235401 B2 US 7235401B2
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cell
cell cycle
cells
cyclin
reporter
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US20040248133A1 (en
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Jonathon Noe Pines
Nicholas Thomas
Anne Elizabeth Jones
Ian David Goodyer
Michael John Francis
Rahman Aziz Ismail
Jonathan Mark Kendall
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GE Healthcare UK Ltd
Cancer Research Technology Ltd
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Cancer Research Technology Ltd
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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
    • C07K14/4738—Cell cycle regulated proteins, e.g. cyclin, CDC, INK-CCR
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression

Definitions

  • the present invention relates to a novel, non-destructive and dynamic process for determining the cell cycle position of living cells.
  • Eukaryotic cell division proceeds through a highly regulated cell cycle comprising consecutive phases termed G1, S, G2 and M.
  • Disruption of the cell cycle or cell cycle control can result in cellular abnormalities or disease states such as cancer which arise from multiple genetic changes that transform growth-limited cells into highly invasive cells that are unresponsive to normal control of growth. Transition of normal cells into cancer cells can arise though loss of correct function in DNA replication and DNA repair mechanisms. All dividing cells are subject to a number of control mechanisms, known as cell-cycle checkpoints, which maintain genomic integrity by arresting or inducing destruction of aberrant cells. Investigation of cell cycle progression and control is consequently of significant interest in designing anticancer drugs. (Flatt, P. M. and Pietenpol, J. A. Drug Metab. Rev., (2000), 32(3–4), 283–305; Buolamwini, J. K. Current Pharmaceutical Design, (2000), 6, 379–392).
  • cell cycle status for cell populations has been determined by flow cytometry using fluorescent dyes which stain the DNA content of cell nuclei (Barlogie, B. et al, Cancer Res., (1983), 43(9), 3982–97).
  • Flow cytometry yields quantitative information on the DNA content of cells and hence allows determination of the relative numbers of cells in the G1, S and G2+M phases of the cell cycle.
  • this analysis is a destructive non-dynamic process and requires serial sampling of a population to determine cell cycle status with time.
  • standard flow cytometry techniques examine the total cell population in the sample and yield limited data on individual cells, which precludes study of cell cycle status of different cell types that may be present within the sample under analysis.
  • EP 798386 describes a method for the analysis of the cell cycle of cell sub-populations present in heterogeneous cell samples. This method uses sequential incubation of the sample with fluorescently labelled monoclonal antibodies to identify specific cell types and a fluorochrome that specifically binds to nucleic acids. This permits determination of the cell cycle distribution of sub-populations of cells present in the sample.
  • this method utilises flow cytometry, it still yields only non-dynamic data and requires serial measurements to be performed on separate samples of cells to determine variations in the cell cycle status of a cell population with time following exposure to an agent under investigation for effects on cell cycle progression.
  • a further disadvantage of flow cytometry techniques relates to the indirect, and inferred assignment of cell cycle position of cells based on DNA content. Since the DNA content of cell nuclei varies through the cell cycle in a reasonably predictable fashion, ie. cells in G2 or M have twice the DNA content of cells in G1, and cells undergoing DNA synthesis in S phase have an intermediate amount of DNA, it is possible to monitor the relative distribution of cells between different phases of the cell cycle.
  • the technique does not allow precision in determining the cell cycle position of any individual cell due to ambiguity in assigning cells to G2 or M phases and to further imprecision arising from inherent variation in DNA content from cell to cell within a population which can preclude precise discrimination between cells which are close to the boundary between adjacent phases of the cell cycle.
  • Cell cycle progression is tightly regulated by defined temporal and spatial expression, localisation and destruction of a number of cell cycle regulators which exhibit highly dynamic behaviour during the cell cycle (Pines, J., Nature Cell Biology, (1999), 1, E73–E79). For example, at specific cell cycle stages some proteins translocate from the nucleus to the cytoplasm, or vice versa, and some are rapidly degraded. For details of known cell cycle control components and interactions, see Kohn, Molecular Biology of the Cell (1999), 10, 2703–2734.
  • Cyclin B1 expression is driven by a cell cycle phase specific promoter which initiates expression at the end of S phase and peaks during G2. Once expressed, this protein constantly shuttles between the nucleus and the cytoplasm during the G2 phase, but it is primarily cytoplasmic because the rate of its export is much greater than its import.
  • cyclin B1 rapidly translocates into the nucleus, when its rate of import substantially increases, and its export decreases, in a phosphorylation dependent manner ( FIG. 1 ).
  • cyclin B1 in the cell can be used to mark the transition from G2 phase to mitosis. Once a cell reaches metaphase, or, more accurately, when the spindle assembly checkpoint is satisfied, cyclin B1 is very rapidly degraded. Cyclin B1 destruction continues throughout the following G1 phase but stops once cells begin DNA replication. These events have been visualised in real time by micro-injection of fluorescently labelled cyclin B1 into living cells (Clute and Pines, Nature Cell Biology, (1999), 1, 82–87).
  • WO 00/29602 describes use of a cyclin A promoter to drive expression of GFP as a selectable marker for dividing transgenic stem cells to allow dividing cells to be isolated from a background of non-dividing cells by fluorescence activated cell sorting. While this method allows identification and selection of cells which have progressed past a certain stage in the cell cycle, it does not yield information on the cell cycle status of any given cell, other than historical information that the cell has or has not passed through the G2 phase of the cell cycle at some time in the past.
  • U.S. Pat. No. 6,048,693 describes a method for screening for compounds affecting cell cycle regulatory proteins, wherein expression of a reporter gene is linked to control elements which are acted on by cyclins or other cell cycle control proteins.
  • temporal expression of a reporter gene product is driven in a cell cycle specific fashion and compounds acting on one or more cell cycle control components may increase or decrease expression levels. Since the assay system contains no elements which provide for the destruction of the reporter gene product nor for destruction of any signal arising from the reporter gene, the method cannot yield information on the cell cycle position of any cells in the assay and reports only on general perturbations of cell cycle control mechanisms.
  • U.S. Pat. No. 5,849,508 and U.S. Pat. No. 6,103,887 describe methods for determining the proliferative status of cells by use of antibodies which bind to cyclin A. These methods provide means for determining the percentage of proliferating cells in a test population relative to a control population.
  • U.S. Pat. No. 6,159,691 relates to a method for assaying for putative regulators of cell cycle progression.
  • nuclear localisation signals derived from the cell cycle phase specific transcription factors DP-3 and E2F-1 are used to assay the activity of compounds which act as agonists or antagonists to increase or decrease nuclear localisation of an NLS fused to a detectable marker.
  • the present invention describes a method which utilises key components of the cell cycle regulatory machinery in defined combinations to provide novel means of determining cell cycle status for individual living mammalian cells in a non-destructive process providing dynamic read out.
  • the present invention provides DNA constructs, and cell lines containing such constructs, that exhibit activation and destruction of a detectable reporter molecule in a cell cycle phase specific manner, by direct linkage of reporter signal switching to temporal and spatial expression and destruction of cell cycle components. This greatly improves the precision of determination of cell cycle phase status and allows continuous monitoring of cell cycle progression in individual cells. Furthermore, it has been found that key control elements can be isolated and abstracted from functional elements of the cell cycle control mechanism to permit design of cell cycle phase reporters which are dynamically regulated and operate in concert with, but independently of, endogenous cell cycle control components, and hence provide means for monitoring cell cycle position without influencing or interfering with the natural progression of the cell cycle.
  • nucleic acid reporter construct comprising a nucleic acid sequence encoding a detectable live-cell reporter molecule operably linked to and under the control of:
  • reporter construct is expressed in a mammalian cell at a predetermined position in the cell cycle.
  • Expression being defined as all of the processes involved in the biosynthesis of a protein from a gene.
  • live-cell as it relates to reporter molecules, defines a reporter molecule which produces a detectable signal in living cells and is therefore suitable for use in live-cell imaging systems.
  • a method for determining the position in the cell cycle of a mammalian cell comprising:
  • nucleic acid reporter construct comprising a nucleic acid sequence encoding a detectable live cell-reporter molecule operably linked to and under the control of:
  • reporter construct is expressed in a cell at a predetermined point in the cell cycle
  • the nucleic acid reporter construct is also linked to and under the control of a cell cycle phase-specific spatial localisation control element.
  • the nucleic acid reporter construct is a DNA construct.
  • the cell cycle phase-specific expression control element is typically a DNA sequence that controls transcription and/or translation of one or more nucleic acid sequences and permits the cell cycle specific control of expression. Any expression control element that is specifically active in one or more phases of the cell cycle may suitably be used for construction of the cycle position reporter construct.
  • the cell cycle phase specific expression control element may be selected from cell cycle specific promoters and other elements that influence the control of transcription or translation in a cell cycle specific manner.
  • the expression control element is a promoter
  • the choice of promoter will depend on the phase of the cell cycle selected for study.
  • Suitable promoters include: cyclin B1 promoter (Cogswell et al, Mol. Cell. Biol., (1995), 15(5), 2782–90, Hwang et al, J. Biol. Chem., (1995), 270(47), 28419–24, Piaggio et al, Exp. Cell Res., (1995), 216(2), 396–402); Cdc25B promoter (Korner et al, J. Biol. Chem., (2001), 276(13), 9662–9); cyclin A2 promoter (Henglein et al, Proc. Nat. Acad. Sci.
  • Cdc6 promoter Hateboer et al, Mol. Cell Biol., (1998), 18(11), 6679–97, Yan et al, Proc. Nat. Acad. Sci. USA, (1998), 95(7), 3603–8); DHFR promoter (Shimada et al, J. Biol. Chem., (1986), 261(3), 1445–52, Shimada and Nienhuis, J. Biol. Chem., (1985), 260(4), 2468–74) and histones promoters (van Wijnen et al, Proc. Nat. Acad. Sci. USA, (1994), 91, 12882–12886).
  • the cell cycle phase specific expression control element may be selected from cell cycle specific IRES elements and other elements that influence the control of translation in a cell cycle specific manner.
  • An IRES element is an internal ribosomal entry site that allows the binding of a ribosome and the initiation of translation to occur at a region of mRNA which is not the 5′-capped region.
  • a cell cycle-specific IRES element restricts cap-independent initiation of translation to a specific stage of the cell cycle (Sachs, A. B., Cell, (2000), 101, 243–5).
  • the expression control element is selected to be an IRES, suitably its selection will depend on the cell cycle phase under study. In this case, a constitutively expressed (eg.
  • CMV or SV40 CMV or SV40
  • inducible promoter may be used to control the transcription of the bicistronic mRNA (Sachs, A. B., Cell, (2000), 101, 243–5).
  • a non cell cycle phase-dependent IRES element eg. the EMCV IRES found in pIRES vectors, BD Clontech
  • more precise control of expression of the reporter may be obtained by using a cell cycle phase specific promoter in conjunction with a cell cycle phase specific IRES element.
  • IRES elements suitable for use in the invention include: G2-IRES (Cornelis et al, Mol. Cell, (2000), 5(4), 597–605); HCV IRES (Honda et al, Gastroenterology, (2000), 118, 152–162); ODC IRES (Pyronet et al, Mol. Cell, (2000), 5, 607–616); c-myc IRES (Pyronnet et al, Mol. Cell, (2000), 5(4), 607–16) and p58 PITSLRE IRES (Cornelis et al, Mol. Cell, (2000), 5(4), 597–605).
  • Table 1 lists some preferred expression control elements that may be used in accordance with the invention, and indicates the cell cycle phase in which each element is activated.
  • the destruction control element may be cell cycle mediated, for example: Cyclin B1 D-box (Glotzer et al, Nature, (1991), 349, 132–138, Yamano et al, EMBO J., (1998), 17(19), 5670–8, Clute and Pines, Nature Cell Biology, (1999), 1, 82–87); cyclin A N-terminus (den Elzen and Pines, J. Cell Biol., (2001), 153(1), 121–36, Geley et al, J.
  • Table 2 lists destruction control elements that may be used according to the invention and indicates the cell cycle phase in which each element is activated.
  • the destruction control element may be non cell-cycle mediated, such as PEST sequences as described by Rogers et al, Science, (1986), 234, 364–8.
  • non cell-cycle mediated destruction control elements include sequences derived from casein, ornithine decarboxylase and proteins that reduce protein half-life. Use of such non cell-cycle mediated destruction control sequences in the method of the invention provides means for determining the persistence time of the cell cycle reporter following induction of expression by a cell cycle specific promoter.
  • the live-cell reporter molecule encoded by the nucleic acid sequence may be selected from the group consisting of fluorescent proteins and enzymes.
  • Preferred fluorescent proteins include Green Fluorescent Protein (GFP) from Aequorea Victoria and derivatives of GFP such as functional GFP analogues in which the amino acid sequence of wild type GFP has been altered by amino acid deletion, addition, or substitution.
  • Suitable GFP analogues for use in the present invention include EGFP (Cormack, B.
  • EYFP and ECFP U.S. Pat. No. 6,066,476, Tsien, R. et al
  • F64L-GFP U.S. Pat. No. 6,172,188, Thastrup, O. et al
  • BFP U.S. Pat. No. 6,077,707, Tsien, R. et al
  • Other fluorescent proteins include DsRed, HcRed and other novel fluorescent proteins (BD Clontech and Labas, Y. A. et al, Proc Natl Acad Sci USA (2002), 99, 4256–61) and Renilla GFP (Stratagene).
  • Suitable enzyme reporters are those which are capable of generating a detectable (e.g. a fluorescent or a luminescent) signal in a substrate for that enzyme.
  • Particularly suitable enzyme/substrates include: nitroreductase/Cy-Q (as disclosed in WO 01/57237) and ⁇ -lactamase/CCF4.
  • the nucleic acid reporter construct may optionally include a cell cycle phase-specific spatial localisation control element comprising a DNA sequence encoding a protein motif that is capable of controlling the sub-cellular localisation of the protein in a cell cycle specific manner.
  • a localisation control element may be used advantageously according to the invention where:
  • Suitable spatial localisation control elements include those that regulate localisation of a cell cycle control protein, for example the cyclin B1 CRS.
  • FIG. 2 ( 2 A/ 2 B/ 2 C) illustrates the general construction of a DNA construct according to the invention.
  • the construct comprises a cyclin B1 promoter, a cyclin B1 destruction box (D-box), a cyclin B1 cytoplasmic retention sequence (CRS) and a green fluorescent protein (GFP).
  • D-box a cyclin B1 destruction box
  • CRS cyclin B1 cytoplasmic retention sequence
  • GFP green fluorescent protein
  • the nucleic acid reporter construct comprises an expression vector comprising the following elements:
  • a vector backbone comprising:
  • the nucleic acid reporter construct additionally contains a cell cycle phase-specific spatial localisation control element and/or a eukaryotic drug resistance gene, preferably a mammalian drug resistance gene.
  • Expression vectors may also contain other nucleic acid sequences, such as polyadenylation signals, splice donor/splice acceptor signals, intervening sequences, transcriptional enhancer sequences, translational enhancer sequences and the like.
  • the drug resistance gene and the reporter gene may be operably linked by an internal ribosome entry site (IRES), which is either cell cycle specific (Sachs, et al, Cell, (2000), 101, 243–245) or cell cycle independent (Jang et al, J. Virology, (1988), 62, 2636–2643 and Pelletier and Sonenberg, Nature, (1988), 334, 320–325), rather than the two genes being driven from separate promoters.
  • IRES internal ribosome entry site
  • the pIRES-neo and pIRES-puro vectors commercially available from Clontech may be used.
  • the nucleic acid reporter construct is assembled from a DNA sequence encoding the cyclin B1 promoter operably linked to DNA sequences encoding 171 amino acids of the amino terminus of cyclin B1 and a DNA sequence encoding a green fluorescent protein (GFP) ( FIG. 3 ).
  • GFP green fluorescent protein
  • cyclin B1 a nine amino acid motif termed the destruction box (D-box). This is necessary to target cyclin B1 to the ubiquitination machinery and, in conjunction with at least one C-terminal lysine residue, this is also required for its cell-cycle specific degradation; ii) an approximately ten amino acid nuclear export signal (NES).
  • D-box destruction box
  • This motif is recognised, either directly or indirectly, by exportin 1 and is sufficient to maintain the bulk of cyclin B1 in the cytoplasm throughout interphase; iii) approximately four mitosis-specific phosphorylation sites that are located in and adjacent to the NES and confer rapid nuclear import and a reduced nuclear export at mitosis.
  • exportin 1 When expressed in a eukaryotic cell, the construct will exhibit cell cycle specific expression and destruction of the GFP reporter which parallels the expression and degradation of endogenous cyclin B1.
  • GFP fluorescence intensity permits identification of cells in the G2/M phase of the cell cycle ( FIG. 4 ).
  • nucleic acid reporter construct according to the first aspect may be constructed by selecting suitable alternative cell cycle control elements, for example from those shown in Tables 1 and 2, to design cell cycle phase reporters which report a desired section of the cell cycle.
  • Suitable vector backbones which include bacterial and mammalian drug resistance genes and a bacterial origin of replication include, but are not limited to: pCl-neo (Promega), pcDNA (Invitrogen) and pTriEx1 (Novagen).
  • Suitable bacterial drug resistance genes include genes encoding for proteins that confer resistance to antibiotics including, but not restricted to: ampicillin, kanamycin, tetracyclin and chloramphenicol.
  • Eurkaryotic drug selection markers include agents such as: neomycin, hygromycin, puromycin, zeocin, mycophenolic acid, histidinol, gentamycin and methotrexate.
  • the DNA construct may be prepared by the standard recombinant molecular biology techniques of restriction digestion, ligation, transformation and plasmid purification by methods familiar to those skilled in the art and are as described in Sambrook, J. et al (1989), Molecular Cloning—A Laboratory Manual, Cold Spring Harbor Laboratory Press.
  • the construct can be prepared synthetically by established methods, eg. the phosphoramidite method described by Beaucage and Caruthers, (Tetrahedron Letters, (1981), 22, 1859–1869) or the method described by Matthes et al (EMBO J., (1984), 3, 801–805).
  • oligonucleotides are synthesised, eg.
  • DNA construct may also be prepared by polymerase chain reaction (PCR) using specific primers, for instance, as described in U.S. Pat. No. 4,683,202 or by Saiki et al (Science, (1988), 239, 487–491).
  • PCR polymerase chain reaction
  • the gene sequence encoding the reporter must be joined in frame with the cell cycle phase specific destruction control element and optionally the spatial localisation control element.
  • the resultant DNA construct should then be placed under the control of one or more suitable cell cycle phase specific expression control elements.
  • a host cell transfected with a nucleic acid reporter construct according to the present invention may be any mammalian cell which is capable of expressing the construct.
  • the prepared DNA reporter construct may be transfected into a host cell using techniques well known to the skilled person.
  • One approach is to temporarily permeabilise the cells using either chemical or physical procedures. These techniques may include: electroporation (Tur-Kaspa et al, Mol. Cell Biol. (1986), 6, 716–718; Potter et al, Proc. Nat. Acad. Sci. USA, (1984), 81, 7161–7165), a calcium phosphate based method (eg. Graham and Van der Eb, Virology, (1973), 52, 456–467 and Rippe et al, Mol. Cell Biol., (1990), 10, 689–695) or direct microinjection.
  • cationic lipid based methods may be used to introduce DNA into cells (Stewart et al, Human Gene Therapy, (1992), 3, 267; Torchilin et al, FASEB J, (1992), 6, 2716; Zhu et al, Science, (1993), 261, 209–211; Ledley et al, J. Pediatrics, (1987), 110, 1; Nicolau et al, Proc. Nat. Acad. Sci., USA, (1983), 80, 1068; Nicolau and Sene, Biochem. Biophys. Acta, (1982), 721, 185–190).
  • Jiao et al, Biotechnology, (1993), 11, 497–502 describe the use of bombardment mediated gene transfer protocols for transferring and expressing genes in brain tissues which may also be used to transfer the DNA into host cells.
  • a further alternative method for transfecting the DNA construct into cells utilises the natural ability of viruses to enter cells.
  • Such methods include vectors and transfection protocols based on, for example, Herpes simplex virus (U.S. Pat. No. 5,288,641), cytomegalovirus (Miller, Curr. Top. Microbiol. Immunol., (1992), 158, 1), vaccinia virus (Baichwal and Sugden, 1986, in Gene Transfer, ed. R. Kucherlapati, New York, Plenum Press, p 117–148), and adenovirus and adeno-associated virus (Muzyczka, Curr. Top. Microbiol. Immunol., (1992), 158, 97–129).
  • suitable recombinant host cells include HeLa cells, Vero cells, Chinese Hamster ovary (CHO), U2OS, COS, BHK, HepG2, NIH 3T3 MDCK, RIN, HEK293 and other mammalian cell lines that are grown in vitro.
  • Such cell lines are available from the American Tissue Culture Collection (ATCC), Bethesda, Md., U.S.A. Cells from primary cell lines that have been established after removing cells from a mammal followed by culturing the cells for a limited period of time are also intended to be included in the present invention.
  • Cell lines which exhibit stable expression of a cell cycle position reporter may also be used in establishing xenografts of engineered cells in host animals using standard methods. (Krasagakis, K. J et al, Cell Physiol., (2001), 187(3), 386–91; Paris, S. et al, Clin. Exp. Metastasis, (1999), 17(10), 817–22). Xenografts of tumour cell lines engineered to express cell cycle position reporters will enable establishment of model systems to study tumour cell division, stasis and metastasis and to screen new anticancer drugs.
  • cells transfected with the DNA reporter construct may be cultured under conditions and for a period of time sufficient to allow expression of the reporter molecule at a specific stage of the cell cycle.
  • expression of the reporter molecule will occur between 16 and 72 hours post transfection, but may vary depending on the culture conditions.
  • the reporter molecule is based on a green fluorescent protein sequence the reporter may take a defined time to fold into a conformation that is fluorescent. This time is dependent upon the primary sequence of the green fluorescent protein derivative being used.
  • the fluorescent reporter protein may also change colour with time (see for example, Terskikh, Science, (2000), 290, 1585–8) in which case imaging is required at specified time intervals following transfection.
  • the cell cycle position of the cells may be determined by monitoring the expression of the reporter molecule and detecting signals emitted by the reporter using an appropriate detection device. If the reporter molecule produces a fluorescent signal, then, either a conventional fluorescence microscope, or a confocal based fluorescence microscope may be used. If the reporter molecule produces luminescent light, then a suitable device such as a luminometer may be used. Using these techniques, the proportion of cells expressing the reporter molecule may be determined. If the DNA construct contains translocation control elements and the cells are examined using a microscope, the location of the reporter may also be determined.
  • the fluorescence of cells transformed or transfected with the DNA construct may suitably be measured by optical means in for example; a spectrophotometer, a fluorimeter, a fluorescence microscope, a cooled charge-coupled device (CCD) imager (such as a scanning imager or an area imager), a fluorescence activated cell sorter, a confocal microscope or a scanning confocal device, where the spectral properties of the cells in culture may be determined as scans of light excitation and emission.
  • a spectrophotometer a fluorimeter, a fluorescence microscope, a cooled charge-coupled device (CCD) imager (such as a scanning imager or an area imager), a fluorescence activated cell sorter, a confocal microscope or a scanning confocal device, where the spectral properties of the cells in culture may be determined as scans of light excitation and emission.
  • CCD charge-coupled device
  • the nucleic acid reporter construct comprises a drug resistance gene
  • cells expressing the modified reporter gene may be selected by growing the cells in the presence of an antibiotic for which transfected cells are resistant due, to the presence of a selectable marker gene.
  • the purpose of adding the antibiotic is to select for cells that express the reporter gene and that have, in some cases, integrated the reporter gene, with its associated promoter, IRES elements, enhancer and termination sequences into the genome of the cell line.
  • a clonal cell line expressing the construct can be isolated using standard techniques. The clonal cell line may then be grown under standard conditions and will express reporter molecule and produce a detectable signal at a specific point in the cell cycle.
  • Cells transfected with the nucleic acid reporter construct according to the present invention may be grown in the absence and/or the presence of a test system to be studied and whose effect on the cell cycle of a cell is to be determined.
  • a test system to be studied and whose effect on the cell cycle of a cell is to be determined.
  • a test system determining the effect of a test system on the cell cycle position of a mammalian cell, said method comprising:
  • nucleic acid reporter construct comprising a nucleic acid sequence encoding a detectable live-cell reporter molecule operably linked to and under the control of:
  • reporter construct is expressed in a cell at a predetermined point in the cell cycle
  • a test system determines the effect of a test system on the cell cycle position of a mammalian cell, the method comprising:
  • a test system comprising:
  • reporter construct is expressed in a cell at a predetermined point in the cell cycle
  • a difference between the emitted signals measured in the first and second cell populations is indicative of the effect of the test system on the cell cycle position of the cell.
  • test system it is intended to mean an agent such as a drug, hormone, protein, peptide, nucleic acid and the like, to which the cell is exposed.
  • the test system may be an agent such as a nucleic acid, peptide or protein that is expressed in the cell under study.
  • cells transfected with the nucleic acid reporter constructs according to the present invention may be used to determine whether expression of cDNA containing constructs encoding proteins under study have an effect on the cell cycle position of a cell.
  • a series of cDNAs, inserted into a mammalian expression vector may be transiently transfected into a cell stably expressing the cell cycle position reporter. By monitoring the expression and location of the nucleic acid reporter construct in these transfected cells, it is possible to determine the effects of the proteins encoded by the cDNAs on the cell cycle.
  • the cell cycle position nucleic acid reporter constructs according to the present invention may also be used in a method to determine the effect of the cell cycle position on a cellular process, or to determine the effect of the cell cycle position on the action of a test substance on a cellular process. It is well known that many cellular processes, including those that respond to external stimuli, are influenced by the cell cycle so as to operate or respond differently at different stages of the cell cycle. For example, endothelin receptors have been shown to be expressed at different levels during different phases of the cell cycle (Okazawa et al. J. Biol.
  • cell cycle position reporter constructs will allow cell to cell variations in a biological assay, measured using an appropriate assay reporter, to be correlated with the signal from a cell cycle position reporter in order to determine if any variations in the assay signal correlate with the cell cycle position reporter signal and hence determine any cell cycle dependence of the assay signal.
  • assays may be devised in which the amount of a red fluorescently labelled ligand bound to a cell surface receptor is correlated with cell cycle status determined using a GFP cell cycle position reporter.
  • cellular process it is meant the normal processes which living cells undergo and includes: biosynthesis, uptake, transport, receptor binding, metabolism, fusion, biochemical response, growth and death.
  • Two or more cell cycle position nucleic acid reporter constructs may be used in combination in applications that include reporting on transition through two or more, cell cycle phases within the same cell.
  • two or more different constructs are engineered and expressed in the same cell, wherein each reporter construct comprises a different combination of control elements linked to a different and distinguishable reporter.
  • cellular expression of a construct comprising a cyclin B1 promoter and cyclin B1 D-box operably linked to GFP in combination with expression in the same cell of a second construct comprising a cyclin A2 promoter and cyclin B1 D-box operably linked to blue fluorescent protein (BFP) will allow discrimination of cells in S phase (blue fluorescence) from cells in G2/M phase (blue and green fluorescence).
  • BFP blue fluorescent protein
  • cell cycle position nucleic acid reporter constructs and assay methods according to the present invention may be used in a variety of additional applications, for example:
  • Cells transfected with the cell cycle position reporter constructs of the present invention may be used to determine the effect of the cell cycle on the expression, translocation or subcellular distribution of a second marker in a multiplexed assay. For example, if the intracellular translocation of a fluorescent reporter to the plasma membrane is being studied and it is found that a test compound results in translocation in a percentage of the cells, then, using cells transfected with a construct according to the invention, it is possible to determine whether the translocation was cell cycle dependent.
  • a seventh aspect of the invention there is provided a method of determining the effect of the mammalian cell cycle on the expression, translocation or sub-cellular distribution of a first detectable reporter which is known to vary in response to a test system, the method comprising:
  • transgenic organism comprising a cell as hereinbefore described.
  • FIG. 1 is a schematic diagram illustrating cyclin B1 regulation during cell cycle progression.
  • the cell cycle proceeds in the direction of the arrow with cyclin B1 expression driven by a cell cycle phase-specific promoter which initiates expression at the end of the S phase and peaks during G2 (A).
  • cyclin B1 translocates from the cytoplasm to the nucleus and from metaphase onwards (C) the protein is specifically degraded.
  • FIG. 2 is a schematic diagram illustrating cell cycle position nucleic acid reporter constructs according to the present invention and in which, 2 A utilises a cell cycle phase-specific promoter and no IRES element, 2 B utilises an IRES element to facilitate mammalian selection, and 2 C contains a constituitive or inducible mammalian promoter and a cell cycle phase-specific IRES as the expression control element.
  • A represents a cell cycle phase-specific expression control (promoter)
  • B represents a cell cycle phase specific destruction control element
  • C represents a cell cycle phase specific localisation control element
  • D represents a reporter gene
  • E represents a non-cell cycle specific IRES element
  • F represents a mammalian selectable marker
  • G represents a mammalian constitutive promoter
  • H represents a cell cycle specific IRES element.
  • FIG. 3 shows a DNA construct for determining the G2/M phase of the cell cycle, the construct containing a cyclin B1 promoter (A), cyclin B1 destruction box (D-box) (B), cyclin B1 CRS(C) and a GFP reporter (D).
  • A cyclin B1 promoter
  • D-box cyclin B1 destruction box
  • C cyclin B1 CRS(C)
  • D GFP reporter
  • FIG. 4 illustrates the expression of a nucleic acid construct expressing the G2/M cell cycle phase marker in a population of unsynchronised cells. Each cell exhibits cyclical expression and destruction of the fluorescent product from the construct, resulting in a continuous “blinking” pattern of fluorescence from all cells in the population. Analysis of the fluorescence intensity of each cell at times 1, 2, 3 and 4 yields dynamic information on the cell position status of each cell.
  • FIG. 5 is a bar chart showing the effect of cell cycle blocking agents on GFP fluorescence from a cell cycle phase marker according to the invention.
  • A represents cells inhibited in mitosis by demecolchicine, B represents control cells and C represents cells inhibited at G1/S phase by mimosine;
  • FIG. 6 is a series of time lapse photographs showing a cell that has been microinjected with the construct described in Example 1 and undergoing mitosis according to Example 3.
  • Differential interference contrast (DIC) images are shown on the left with the corresponding fluorescence image on the right.
  • Frame A shows a cell (arrowed) in metaphase which shows bright fluorescence in the nucleus.
  • Frames B and C show the same cell at later times in anaphase (B) and late anaphase (C).
  • the DIC images of B and C show the division of the cell into two daughter cells (indicated by 2 arrows), the corresponding fluorescence images show the loss of fluorescence accompanying destruction of the fluorescent construct as the cell cycle progresses.
  • FIG. 7 is a series of time lapse photographs showing a U2-OS cell expressing the construct described in Example 1 undergoing mitosis according to Example 4.
  • panel A the cell on the left is in G2-phase of the cell cycle
  • panel B the cell has entered prophase
  • panel C the cell is in metaphase
  • panel D the cell is in telophase
  • panel E the two daughter cells are non-fluorescent and in G1 phase.
  • FIG. 8 is a graph showing the relative fluorescence of a U2-OS cell and its progeny that are stably expressing the construct described in Example 1 according to Example 4.
  • the cell undergoes mitosis (A) after 4 hours and divides into two daughter cells (1,2).
  • Daughter 1 then undergoes mitosis (B) at 34 hours dividing into two granddaughters (1.1 and 1.2) and
  • Daughter 2 undergoes mitosis at 42 hours (C) dividing into granddaughters (2.1 and 2.2).
  • the bold arrows show the increase in fluorescence of the daughter cells during G2-phase and prior to mitosis.
  • FIG. 9 is a FACS analysis showing the effect of cell cycle inhibitors upon the relative green fluorescence intensity of the stable cell line described in Example 5 according to Example 6.
  • the histograms (on the left) show number of cells (Y-axis) against propidium iodide staining with FL3A (red fluorescence) and the dot-plots (on the right) show the same cells plotted with FL1H (green fluorescence, Y-axis) against FL3A (X-axis).
  • the top two graphs show control cells that have not been treated with a cell cycle inhibitor. As can be seen these cells show the typical cell cycle profile (A) and have a diagonal pattern indicating that cells with more GFP are in the G2/M part of the cell cycle.
  • the middle two graphs show cells that have been blocked in G2/M by colchicine (C). The majority of these cells have a relatively high green fluorescence (D). The bottom two graphs show cells that have been partially blocked in G1/S by mimosine (E). The majority of these cells have a relatively low green fluorescence (F).
  • SEQ ID NO:1 GGGAAGCTTAGGATGGCGCTCCGAGTCACCAGGAAC
  • SEQ ID NO:2 GCCGGATCCCACATATTCACTACAAAGGTT.
  • wtGFP The gene for wtGFP was amplified with primers designed to introduce restriction sites that would facilitate construction of fusion proteins.
  • the PCR product was cloned into pTARGET (Promega) according to manufacturer's instructions and mutations (F64L/S175G/E222G) were introduced using the QuikChange site-directed mutagenesis kit (Stratagene). Constructs were verified by automated DNA sequencing. DNA encoding the mutant GFP was then cloned downstream of the cyclin B1 N-terminal region using BamHI and SalI restriction sites.
  • U20S cells (ATCC HTB-96) were cultured in wells of a 96 well microtitre plate.
  • Cells were transfected with a cell cycle reporter construct prepared according to Example 1, comprising a cyclin B1 promoter operably linked to sequences encoding the cyclin B1 D-box, the cyclin B1 CRS, and GFP in a pCORON4004 vector (Amersham Biosciences) using Fugene 6 (Roche) as the transfection agent.
  • cells exposed to demecolcine showed increased fluorescence compared to control cells while cells exposed to mimosine showed decreased fluorescence compared to control cells.
  • cell cycle phase reporters of the current invention are suitable for detecting agents which modulate cell cycle progression in a transient system and furthermore such reporters permit identification of the phase of the cell cycle in which cells are blocked.
  • HeLa cells were micro-injected with the construct prepared according to Example 1 and examined by time lapse microscopy, as shown in FIG. 6 .
  • Differential interference contrast (DIC) images are shown on the left with the corresponding fluorescence image on the right.
  • Frame A shows a cell (arrowed) in metaphase which shows bright fluorescence in the nucleus.
  • Frames B and C show the same cell at later times in anaphase (B) and late anaphase (C).
  • the DIC images of B and C show the division of the cell into two daughter cells (indicated by 2 arrows), the corresponding fluorescence images show the loss of fluorescence accompanying destruction of the fluorescent construct as the cell cycle progresses.
  • U2-OS cells (ATCC HTB-96) were transfected with the construct described in example 1 and grown for several months in culture media containing 1 mg/ml geneticin to select for cells stably expressing the construct. A number of clones were picked by standard methods (e.g. described in Freshney, Chapter 11 in Culture of Animal Cells, (1994) Wiley-Liss Inc) and a clone containing fluorescent cells was isolated. This cell line was maintained at 37° C. in culture media containing 25 mM HEPES and a fluorescence and transmitted image of the cells taken every 15 minutes over a period of 24 hours using a standard xenon lamp at 488 nm. FIG.
  • FIG. 7 shows 5 frames from a portion of the image that indicates that the cell line is behaving as expected.
  • Cells in G2 exhibit green fluorescence in the cytoplasm, cells in early mitosis have fluorescence predominantly in the nucleus and following mitosis the reporter gene is degraded and the cells lose their fluorescence.
  • FIG. 8 shows the fate of a cell from the same clone that was monitored over 48 hours and that underwent two cell divisions to produce four granddaughter cells. For each time point the average intensity of each of the cells' progeny is measured and plotted against time. As can be seen the original cell enters mitosis at ⁇ 4 hours, one of the daughters divides at 32 hours and the other at 42 hours into the experiment. As cells leave S-phase and enter G2 there is a steady increase in average intensity until the cell enters mitosis when the cell rounds up and the average intensity increases dramatically.
  • the green fluorescent protein reporter sequence in the vector described in example 1 was replaced with enhanced GFP (EGFP; Cormack, B. P. et al, Gene, (1996), 173, 33–38; BD Clontech) by standard methods.
  • the EGFP gene is a brighter form of GFP containing the mutations F64L and S65T.
  • EGFP contains codons that have been altered to optimise expression in mammalian cells.
  • This new construct was transfected into U2-OS cells and a number of colonies were isolated by selection with geneticin followed by sorting of single cells using a fluorescence activated cell sorter. These clones showed brighter fluorescence than those generated in example 4 and as expected fluorescence intensity and location appeared to vary according to the cell cycle phase of the cell.
  • the cells were prepared for FACS analysis by standard methods. Briefly the cells were fixed and permeabilised using CytoFix/CytoPerm (Becton Dickinson) according to the manufacturers procedures. The cells were then treated with 50 ⁇ g/ml RNAse and 0.4% Triton X-100 and counterstained with 100 ⁇ g/ml propidium iodide.
  • the degree of propidium iodide staining is proportional to the amount of DNA in the cell and therefore a measure of the cell cycle phase of the cell. As expected, the degree of red propidium iodide staining and the amount of green GFP fluorescence appear to be proportional in the cells.
  • Example 5 The cells prepared in Example 5 were grown in 25 cm 2 flasks and treated with either 100 ng/ml demecolcine (Sigma) or 1 mM mimosine (Sigma) for 24 hours. The cells were then fixed, permeabilised and stained with propidium iodide as described in example 5. FACS analysis revealed that, as expected, cells treated with the colchicine analogue arrested in G2/M and cells treated with mimosine arrested at the G1/S boundary. As is also expected the cells that had been arrested in G2/M were brighter than the cells that had been arrested at G1/S ( FIG. 9 ).

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US20120117668A1 (en) * 2009-07-15 2012-05-10 Rheinische Friedrich-Wilhelms-Universitaet Bonn Nucleic acid expression construct and its use as a cell proliferation marker

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WO2013012752A2 (fr) 2011-07-15 2013-01-24 Sarepta Therapeutics, Inc. Procédés et compositions pour manipulation de la traduction d'isoformes de protéines à partir de sites initiateurs alternatifs d'initiation

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US7745123B2 (en) * 2004-07-23 2010-06-29 Ge Healthcare Uk Limited Cell cycle reporting cell line
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