This tool provides a ready-to-use WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, Genome assembly & profiling Resistome, Mobilome & Virulome as well Pangenome & MLST typing, Blastn & Phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis of NGS data

nf-rMAP: Nextflow-powered microbial genomics pipeline for rapid antimicrobial resistance analysis. Implements rMAP's core functionality with cloud-native scalability, enhanced QC, & modular workflows. Processes Illumina data through assembly, annotation, AMR detection & phylogenetics.