LLM for Drug Editing, ICLR 2024
BindCraft modified to make PyRosetta use and installation optional: no license needed
Predict AMPs in (meta)genomes and peptides
This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)
A Rust implementation of the LightDock macromolecular docking software
Electronic lab notebook for organic chemistry
Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineering
Snakemake-based computational workflow for neoantigen prediction from diverse sources
The GAN model for designing AMP
Application of deep generative model discovers novel and diverse functional peptides against microbial resistance
mPARCE: Protocol for iterative optimization of modified peptides bound to protein targets
Python script to visualize helical wheels based on input sequence.
A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.
Metrics for evaluating biological sequence design
Tools for exploration and analysis of biochemical data like genomics and proteins
A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification
Protein Cleaver is a versatile tool for protein analysis and digestion.
Highly customizable research-oriented peptide search engine
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