An end-to-end RNA-seq pipeline for gene expression analysis and differential expression using FASTQ data, Bowtie2, SAMtools, and R (DESeq2, Gviz, etc.).
bash bioinformatics genomics gene-expression alignment rstats bioconductor deseq2 data-analysis transcriptomics fastq samtools bowtie2 rna-seq-pipeline rsamtools gviz
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Updated
Aug 4, 2025 - R