+
Skip to content

DNAmer not defined #148

@Matthew47work

Description

@Matthew47work

Hi there,

I am trying to use Whippet in Julia and have managed to get all dependencies installed. However, I got the following error during installation and when testing Whippet:

julia> import Pkg; Pkg.precompile()
Precompiling project...
✗ Whippet
0 dependencies successfully precompiled in 2 seconds (66 already precompiled)

ERROR: The following 1 direct dependency failed to precompile:

Whippet [0af2a87d-76f3-44e3-af6e-8f91dcdf7847]

Failed to precompile Whippet [0af2a87d-76f3-44e3-af6e-8f91dcdf7847] to C:\Users\Matthew.julia\compiled\v1.6\Whippet\jl_72BC.tmp.
ERROR: LoadError: LoadError: UndefVarError: DNAMer not defined
Stacktrace:
[1] getproperty(x::Module, f::Symbol)
@ Base .\Base.jl:26
[2] top-level scope
@ C:\Users\Matthew.julia\packages\Whippet\jO73d\src\sgkmer.jl:2
[3] include(mod::Module, _path::String)
@ Base .\Base.jl:384
[4] include(x::String)
@ Whippet C:\Users\Matthew.julia\packages\Whippet\jO73d\src\Whippet.jl:3
[5] top-level scope
@ C:\Users\Matthew.julia\packages\Whippet\jO73d\src\Whippet.jl:33
[6] include
@ .\Base.jl:384 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1235
[8] top-level scope
@ none:1
[9] eval
@ .\boot.jl:360 [inlined]
[10] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[11] top-level scope
@ none:1
in expression starting at C:\Users\Matthew.julia\packages\Whippet\jO73d\src\sgkmer.jl:2
in expression starting at C:\Users\Matthew.julia\packages\Whippet\jO73d\src\Whippet.jl:3
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Types.jl:55
[2] precompile(ctx::Pkg.Types.Context; internal_call::Bool, strict::Bool, warn_loaded::Bool, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:1265
[3] precompile
@ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:921 [inlined]
[4] #precompile#196
@ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:919 [inlined]
[5] precompile()
@ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:919
[6] top-level scope
@ REPL[20]:1

Is this a known problem and how can I fix it? I am assuming my BioSequences package is the issue but I have already updated it.

Thank you for any help and apologies for my ignorance on this!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions

      点击 这是indexloc提供的php浏览器服务,不要输入任何密码和下载