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1. Abricate-Summary-Matrix Abricate-Summary-Matrix Public

   Convert Abricate output files into a binary gene presence/absence matrix with customizable thresholds for streamlined bioinformatics analysis.

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2. Clonal-Complex Clonal-Complex Public

   This Python script can group samples together based on classic MLST results.

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3. SNP-Distance-Matrix-Generator SNP-Distance-Matrix-Generator Public

   A script to calculate pairwise SNP distances from a core-genome VCF file

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4. PopPIPE PopPIPE Public

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