OMERO Zarr Pixel Buffer Implementation

Cookiecutter to create OMERO.web apps

Website

OMERO installation scripts

Install Nginx for use as a front-end proxy.

Test infrastructure for decoupled repositories

OMERO.web production docker image

Installs and configures OMERO.web and Nginx

OMERO.server production docker image

Installs and configures OMERO.server

Gradle project for the ROMIO library of OMERO

Gradle project containing rendering functionality for OMERO

Gradle project containing OMERO Java Client Library

Tools for importing Zarr into OMERO

Sphinx-based documentation for the Open Microscopy Environment

Basic example of using OME-Zarr in a Nextflow pipeline

A module with convenience functions for writing Python code that interacts with OMERO.

Django-based OMERO.web client

Python project containing Ice remoting code for OMERO

Software carpentry lesson about Docker

Bio-Formats documentation

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

Extracted OmeroPy/scripts directory for local modifications.

OMERO Docker compose example

App which is used to search metadata (key-value pairs)

Gradle project for generating model jar for OMERO