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1. welch-lab/liger welch-lab/liger Public

   R package for integrating and analyzing multiple single-cell datasets

   R 422 78

2. welch-lab/MultiVelo welch-lab/MultiVelo Public

   Multi-omic velocity inference

   Python 111 11

3. welch-lab/VeloVAE welch-lab/VeloVAE Public

   Deep Generative Modeling of RNA Velocity

   Jupyter Notebook 35 7

4. welch-lab/pyliger welch-lab/pyliger Public

   Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

   Jupyter Notebook 30 7

5. welch-lab/PerturbNet welch-lab/PerturbNet Public

   PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

   Jupyter Notebook 49 13