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I am getting the following error from the gtf library when trying to annotate my vcf with stringtie output.
$ vcf-expression-annotator -o /shared_dir/temp.annotated.vcf -s sample /shared_dir/temp.vep.vcf /shared_dir/temp.abundance.tsv stringtie transcript
Traceback (most recent call last):
File "/opt/miniconda/envs/gatk/lib/python3.6/site-packages/gtfparse/read_gtf.py", line 121, in parse_with_polars_lazy
**kwargs).lazy()
AttributeError: 'LazyFrame' object has no attribute 'lazy'
Version 2.0.1 with Python 3.6
I have also reported this issue at the gtf page:
openvax/gtfparse#49
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