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1. OLCRedmineAutomator OLCRedmineAutomator Public

   ➿ Program to monitor the OLC Redmine instance for automated bioinformatics job requests

   Python 1

2. AmpliconPipeline AmpliconPipeline Public

   🍗 Pipeline for processing OLC 16S MiSeq runs with QIIME 2

   Jupyter Notebook 2

3. AutoInterOp AutoInterOp Public

   💾 A Python tool for automatically running Illumina InterOp software on MiSeq run output

   Python

4. AutoROGAV2 AutoROGAV2 Public archive

   📒 Code to automatically produce OLC reports of genomic analysis

   Python

5. olc_webportalv2 olc_webportalv2 Public

   ☁️ A web portal to provide a simple interface for bioinformatics analysis with support for multiple CFIA users.

   Python 1

6. sipping_portal sipping_portal Public

   🍹 Local Django application for running GenesipprV2 against active MiSeq runs

   Python 1