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@denis-yuen denis-yuen commented Aug 1, 2025

Description
Routine upstream update, jackson and jersey updates often helps with CVEs.

Review Instructions
Monitor various builds and smoke tests.

Issue
https://ucsc-cgl.atlassian.net/browse/SEAB-7237

Security and Privacy

None, should be improvement if any.

  • Security and Privacy assessed

e.g. Does this change...

  • Any user data we collect, or data location?
  • Access control, authentication or authorization?
  • Encryption features?

Please make sure that you've checked the following before submitting your pull request. Thanks!

  • Check that you pass the basic style checks and unit tests by running mvn clean install
  • Ensure that the PR targets the correct branch. Check the milestone or fix version of the ticket.
  • Follow the existing JPA patterns for queries, using named parameters, to avoid SQL injection
  • If you are changing dependencies, check the Snyk status check or the dashboard to ensure you are not introducing new high/critical vulnerabilities
  • Assume that inputs to the API can be malicious, and sanitize and/or check for Denial of Service type values, e.g., massive sizes
  • Do not serve user-uploaded binary images through the Dockstore API
  • Ensure that endpoints that only allow privileged access enforce that with the @RolesAllowed annotation
  • Do not create cookies, although this may change in the future
  • If this PR is for a user-facing feature, create and link a documentation ticket for this feature (usually in the same milestone as the linked issue). Style points if you create a documentation PR directly and link that instead.

@denis-yuen denis-yuen self-assigned this Aug 1, 2025
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sonarqubecloud bot commented Aug 1, 2025

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codecov bot commented Aug 1, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 74.21%. Comparing base (d73f427) to head (23736ad).
⚠️ Report is 2 commits behind head on develop.

Additional details and impacted files
@@              Coverage Diff              @@
##             develop    #6137      +/-   ##
=============================================
+ Coverage      74.20%   74.21%   +0.01%     
+ Complexity      5664     5663       -1     
=============================================
  Files            389      389              
  Lines          20344    20344              
  Branches        2102     2102              
=============================================
+ Hits           15096    15099       +3     
+ Misses          4249     4246       -3     
  Partials         999      999              
Flag Coverage Δ
bitbuckettests 25.95% <ø> (+0.01%) ⬆️
hoverflytests 27.62% <ø> (ø)
integrationtests 56.12% <ø> (ø)
languageparsingtests 10.83% <ø> (ø)
localstacktests 21.33% <ø> (ø)
toolintegrationtests 29.89% <ø> (ø)
unit-tests_and_non-confidential-tests 26.31% <ø> (ø)
workflowintegrationtests 37.42% <ø> (ø)

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@denis-yuen denis-yuen requested review from a team, kathy-t and svonworl and removed request for a team August 5, 2025 14:35
@denis-yuen denis-yuen marked this pull request as ready for review August 5, 2025 14:35
@denis-yuen denis-yuen merged commit 045ead4 into develop Aug 5, 2025
24 checks passed
@denis-yuen denis-yuen deleted the feature/dropwizard_4_0_15 branch August 5, 2025 17:21
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3 participants

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