Wrangling short-read sequencing data for import into SILO

WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

Rapid Viral Variant Exploration and Detection - Interactive WebApp

Analysis of Illumina sequeincing data of Hepatitis E virus patient samples.

Fitness estimates of SARS-CoV-2 variants

smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

BSSE COVID-19 sequencing of test swab samples

Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes