V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Wrangling short-read sequencing data for import into SILO

WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

Deconvolution for Wastewater Genomics

VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

BSSE COVID-19 sequencing of test swab samples

Fitness estimates of SARS-CoV-2 variants

Inference and analysis of mutation trees in Python