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belowlab

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  1. ldsc ldsc Public

    Forked from bulik/ldsc

    LD Score Regression (LDSC)

    HTML 13 8

  2. IMMerge IMMerge Public

    Tool to merge VCF genotype files at scale

    Python 9 6

  3. shapeit4 shapeit4 Public

    Forked from odelaneau/shapeit4

    Segmented HAPlotype Estimation and Imputation Tool

    C++ 1 1

  4. ukbb-phecode-mapping ukbb-phecode-mapping Public

    Snakemake pipeline for reproducibly mapping the ICD codes in UK Biobank datasets to Phecodes

    Python 1

  5. tnprc-pedigrees tnprc-pedigrees Public

    Pedigree structures for "Pedigree reconstruction and distant pairwise kinship estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta)"

    Shell

  6. primus_v190 primus_v190 Public

    Perl

Repositories

Showing 10 of 58 repositories
  • COMPADRE Public

    Pedigree generation software incorporating IBD data from the algorithms behind PRIMUS, ERSA, and PADRE

    belowlab/COMPADRE’s past year of commit activity
    Perl 0 0 0 0 Updated Jul 7, 2025
  • pedigree-simulator Public

    Pedigree simulation software tool

    belowlab/pedigree-simulator’s past year of commit activity
    Perl 0 0 0 0 Updated Jul 4, 2025
  • belowlab/compadre-website’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 18, 2025
  • drive Public Forked from jtb324/IBDCluster

    A cli tool to analyze ibd sharing for a specific locus for multiple phenotypes

    belowlab/drive’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jun 17, 2025
  • Tractor Public Forked from Atkinson-Lab/Tractor

    Scripts for implementing the Tractor pipeline

    belowlab/Tractor’s past year of commit activity
    Jupyter Notebook 0 MIT 11 0 0 Updated May 27, 2025
  • ancQTL Public
    belowlab/ancQTL’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated May 16, 2025
  • hap-ibd Public Forked from browning-lab/hap-ibd

    The hap-ibd program detects identity-by-descent segments in phased genotype data.

    belowlab/hap-ibd’s past year of commit activity
    Java 0 8 0 1 Updated May 15, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    belowlab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,553 0 0 Updated May 5, 2025
  • MetaXcan Public Forked from hakyimlab/MetaXcan

    MetaXcan software and manuscript

    belowlab/MetaXcan’s past year of commit activity
    Python 0 100 0 1 Updated Apr 29, 2025
  • Concordance-Analysis Public

    This analysis was performed to determine if there was concordance between our ancestries-specific GWAS summary statistics. Please see Shaw et al. 2021

    belowlab/Concordance-Analysis’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 24, 2025

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