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arunbodd/README.md

Hi there! I'm Arun Boddapati 👋

Data Scientist | Machine Learning Expert | Focus Area: Bioinformatics and Public Health


  • 😊 Pronouns: He/Him
  • 🎓 Education: Dual Master's degrees in Bioinformatics and Biomedical Sciences from Indiana University, USA and Symbiosis University, India
  • 💼 Experience: 9 years of expertise in computational biology/bioinformatics.
  • 🔬 Current Role: Lead Scientist developing AI-driven solutions for complex biological problems
  • 🚀 Focus Areas: Multi-Omics, Immunology, Infectious Diseases, Wastewater Surveillance, and Machine Learning applications in Biology
  • 🧠 Currently Learning: GenAI applications to Bioinformatics, LangChain tools & toolkits, and advanced ML for rare diseases
  • 💻 Tech Stack: Python, R, Nextflow, AWS, Docker, and exploring AI solution in biology.
  • 🏆 Recent Achievement: Top 8 ranking in WHO's global mock Mpox response (80+ teams worldwide)
  • 🧬 Specialties:
    • Developed Aquascope Nextflow pipeline for SARS-CoV-2 wastewater reporting at CDC
    • Created an nf-core compliance checker: Rule chunking tool for nf-core pipeline compliance validation
    • Expertise in Transcriptomics (scRNA, RNA, Novel transcripts, Alternate splicing, RNA Binding proteins), Whole Genome/Exome (Variant analysis), Proteomics (Mass Spec and Targetted NULISA panel) and Metagenomics analysis (Variant analysis and Phylogenetics)

📊 GitHub Analytics

GitHub Stats      Top Languages

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🔗 Connect With Me

Portfolio Google Scholar LinkedIn Email


🏅 Career Highlights

  • 🔬 720+ Citations: Co-Authored several high impact publications that showcases my skills in Bioinformatics/Data Science.
  • 🌊 CDC Pipeline: Developed Aquascope for national wastewater surveillance
  • 🤖 AI Innovation:
    • Created nf-core compliance checker Rule chunking tool for pipeline compliance validation.
    • Actively working on establishing a prompt framework for nextflow pipeline refactoring and validation
  • 🌍 Global Recognition: Top scorer in WHO's international disease surveillance response (Monkey Pox) preparedness competition.

Profile Views

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  1. CDCgov/aquascope CDCgov/aquascope Public

    Nextflow 20 15

  2. Portfolio Portfolio Public

    I am a Bioinformatics Scientist by Profession, AI enthusiast by Curiosity and a Technologist by skillset. To know more about me Click the below link

    HTML 2

  3. lintelligence lintelligence Public

    Lintelligence is an advanced, intelligent validation tool that combines the power of Large Language Models (LLMs) with rule-based static analysis to ensure Nextflow pipelines, including nf-core and…

    Python

  4. RM_Baricitinib_manuscript RM_Baricitinib_manuscript Public

    Forked from BosingerLab/RM_Baricitinib_manuscript

    Analysis for Barictinib treatement in COVID infected rhesus macaques

    R

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