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    • MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
      Vue
      GNU Lesser General Public License v3.0
      211920179Updated Jul 10, 2025Jul 10, 2025
    • Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
      Java
      GNU Lesser General Public License v3.0
      1077015Updated Jul 8, 2025Jul 8, 2025
    • Armadillo implementation of DSI to be DataSHIELD ready, part of the MOLGENIS suite
      R
      3092Updated Jul 8, 2025Jul 8, 2025
    • vip

      Public
      Variant Interpretation Pipeline
      Shell
      GNU Lesser General Public License v3.0
      74059Updated Jul 8, 2025Jul 8, 2025
    • Report generator for Variant Call Format (VCF) files
      HTML
      GNU Lesser General Public License v3.0
      1402Updated Jul 8, 2025Jul 8, 2025
    • vip-web

      Public
      Variant Interpretation Pipeline web interface
      Java
      GNU Lesser General Public License v3.0
      0002Updated Jul 8, 2025Jul 8, 2025
    • Variant Call Format (VCF) file annotation
      0000Updated Jul 4, 2025Jul 4, 2025
    • Perl
      8009Updated Jul 1, 2025Jul 1, 2025
    • Python
      GNU General Public License v3.0
      9801Updated Jun 27, 2025Jun 27, 2025
    • vip-utils

      Public
      Shared utils and resources for VIP modules and tools
      Java
      GNU Lesser General Public License v3.0
      0000Updated Jun 24, 2025Jun 24, 2025
    • annotates VCF samples with denovo and possible compound flags and matching inheritance modes
      Java
      GNU Lesser General Public License v3.0
      0500Updated Jun 24, 2025Jun 24, 2025
    • Java
      GNU Lesser General Public License v3.0
      0100Updated Jun 24, 2025Jun 24, 2025
    • Decision tree module for the Variant Interpretation Pipeline (vip)
      Java
      GNU Lesser General Public License v3.0
      0305Updated Jun 24, 2025Jun 24, 2025
    • Report template for Variant Call Format (VCF) Report generator
      TypeScript
      GNU Lesser General Public License v3.0
      0414Updated Jun 20, 2025Jun 20, 2025
    • Generate Trendanalysis plots for standard diagnostic techniques.
      Shell
      3010Updated Jun 20, 2025Jun 20, 2025
    • Repository for resource files for CAPICE and updating CAPICE model
      Python
      GNU Lesser General Public License v3.0
      0180Updated Jun 20, 2025Jun 20, 2025
    • All things related to maintaining the RD3 database
      Python
      GNU General Public License v3.0
      3102Updated Jun 19, 2025Jun 19, 2025
    • Source code of the (new) website for MOLGENIS
      CSS
      GNU Lesser General Public License v3.0
      22000Updated Jun 16, 2025Jun 16, 2025
    • Client to manage shared files in the MOLGENIS Armadillo suite from R
      R
      6320Updated Jun 13, 2025Jun 13, 2025
    • ChronQC

      Public
      Manuscript describing ChronQC is now available online in Bioinformatics
      HTML
      MIT License
      10000Updated Jun 13, 2025Jun 13, 2025
    • Used in manuscript "Accelerating rare disease diagnostics by explainable linking of DNA and RNA using a simplified and interactive RNA-guided workflow"
      R
      GNU Lesser General Public License v3.0
      1001Updated Jun 12, 2025Jun 12, 2025
    • A command line interface for MOLGENIS
      CSS
      GNU Lesser General Public License v3.0
      881613Updated Jun 10, 2025Jun 10, 2025
    • R
      GNU Lesser General Public License v3.0
      1120Updated Jun 3, 2025Jun 3, 2025
    • R
      GNU Lesser General Public License v3.0
      2260Updated Jun 3, 2025Jun 3, 2025
    • Report API for Variant Call Format (VCF) Report templates
      TypeScript
      GNU Lesser General Public License v3.0
      0201Updated Jun 2, 2025Jun 2, 2025
    • Vue
      0003Updated May 28, 2025May 28, 2025
    • Farmacogenetics pipeline
      Shell
      GNU Lesser General Public License v3.0
      4100Updated May 23, 2025May 23, 2025
    • Shell
      GNU Lesser General Public License v3.0
      84130Updated May 22, 2025May 22, 2025
    • molgenis

      Public
      MOLGENIS - for scientific data: management, exploration, integration and analysis.
      Java
      GNU Lesser General Public License v3.0
      961173134Updated May 19, 2025May 19, 2025
    • docker

      Public
      Dockerfiles and docker-compose for MOLGENIS
      Dockerfile
      GNU Lesser General Public License v3.0
      19351Updated May 19, 2025May 19, 2025
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