Repositories list

• molgenis-emx2

  Public
  MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

  Vue

  •

  GNU Lesser General Public License v3.0

  •21•19•201•79•Updated Jul 10, 2025Jul 10, 2025

• molgenis-service-armadillo

  Public
  Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

  hacktoberfest

  Java

  •

  GNU Lesser General Public License v3.0

  •10•7•70•15•Updated Jul 8, 2025Jul 8, 2025

• molgenis-r-datashield

  Public
  Armadillo implementation of DSI to be DataSHIELD ready, part of the MOLGENIS suite

  hacktoberfest

  R

  •3•0•9•2•Updated Jul 8, 2025Jul 8, 2025

• vip

  Public
  Variant Interpretation Pipeline

  pipelinegeneticsvariant-interpretation

  Shell

  •

  GNU Lesser General Public License v3.0

  •7•40•5•9•Updated Jul 8, 2025Jul 8, 2025

• vip-report

  Public
  Report generator for Variant Call Format (VCF) files

  HTML

  •

  GNU Lesser General Public License v3.0

  •1•4•0•2•Updated Jul 8, 2025Jul 8, 2025

• vip-web

  Public
  Variant Interpretation Pipeline web interface

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•2•Updated Jul 8, 2025Jul 8, 2025

• vip-annotate

  Public
  Variant Call Format (VCF) file annotation

  0•0•0•0•Updated Jul 4, 2025Jul 4, 2025

• take-it-easyconfigs

  Public
  Perl

  •8•0•0•9•Updated Jul 1, 2025Jul 1, 2025

• ansible-pipelines

  Public
  Python

  •

  GNU General Public License v3.0

  •9•8•0•1•Updated Jun 27, 2025Jun 27, 2025

• vip-utils

  Public
  Shared utils and resources for VIP modules and tools

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• vip-inheritance-matcher

  Public
  annotates VCF samples with denovo and possible compound flags and matching inheritance modes

  Java

  •

  GNU Lesser General Public License v3.0

  •0•5•0•0•Updated Jun 24, 2025Jun 24, 2025

• vip-inheritance

  Public
  Java

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Jun 24, 2025Jun 24, 2025

• vip-decision-tree

  Public
  Decision tree module for the Variant Interpretation Pipeline (vip)

  Java

  •

  GNU Lesser General Public License v3.0

  •0•3•0•5•Updated Jun 24, 2025Jun 24, 2025

• vip-report-template

  Public
  Report template for Variant Call Format (VCF) Report generator

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •0•4•1•4•Updated Jun 20, 2025Jun 20, 2025

• Trendanalysis

  Public
  Generate Trendanalysis plots for standard diagnostic techniques.

  Shell

  •3•0•1•0•Updated Jun 20, 2025Jun 20, 2025

• capice-resources

  Public
  Repository for resource files for CAPICE and updating CAPICE model

  Python

  •

  GNU Lesser General Public License v3.0

  •0•1•8•0•Updated Jun 20, 2025Jun 20, 2025

• projects-solve-rd

  Public
  All things related to maintaining the RD3 database

  Python

  •

  GNU General Public License v3.0

  •3•1•0•2•Updated Jun 19, 2025Jun 19, 2025

• molgenis.org

  Public
  Source code of the (new) website for MOLGENIS

  CSS

  •

  GNU Lesser General Public License v3.0

  •22•0•0•0•Updated Jun 16, 2025Jun 16, 2025

• molgenis-r-armadillo

  Public
  Client to manage shared files in the MOLGENIS Armadillo suite from R

  hacktoberfest

  R

  •6•3•2•0•Updated Jun 13, 2025Jun 13, 2025

• ChronQC

  Public
  Manuscript describing ChronQC is now available online in Bioinformatics

  HTML

  •

  MIT License

  •10•0•0•0•Updated Jun 13, 2025Jun 13, 2025

• RNA_outlier_pipeline

  Public
  Used in manuscript "Accelerating rare disease diagnostics by explainable linking of DNA and RNA using a simplified and interactive RNA-guided workflow"

  R

  •

  GNU Lesser General Public License v3.0

  •1•0•0•1•Updated Jun 12, 2025Jun 12, 2025

• molgenis-tools-commander

  Public
  A command line interface for MOLGENIS

  hacktoberfest

  CSS

  •

  GNU Lesser General Public License v3.0

  •8•8•16•13•Updated Jun 10, 2025Jun 10, 2025

• ds-tidyverse-client

  Public
  R

  •

  GNU Lesser General Public License v3.0

  •1•1•2•0•Updated Jun 3, 2025Jun 3, 2025

• ds-tidyverse

  Public
  R

  •

  GNU Lesser General Public License v3.0

  •2•2•6•0•Updated Jun 3, 2025Jun 3, 2025

• vip-report-api

  Public
  Report API for Variant Call Format (VCF) Report templates

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •0•2•0•1•Updated Jun 2, 2025Jun 2, 2025

• projects-rd-dashboards

  Public
  Vue

  •0•0•0•3•Updated May 28, 2025May 28, 2025

• PGx-pipeline

  Public
  Farmacogenetics pipeline

  Shell

  •

  GNU Lesser General Public License v3.0

  •4•1•0•0•Updated May 23, 2025May 23, 2025

• NGS_Automated

  Public
  Shell

  •

  GNU Lesser General Public License v3.0

  •8•4•13•0•Updated May 22, 2025May 22, 2025

• molgenis

  Public
  MOLGENIS - for scientific data: management, exploration, integration and analysis.

  javascriptbioinformaticsgenetics+ 6cataloguefreemarkerbiobanklifesciencejavamolgenis

  Java

  •

  GNU Lesser General Public License v3.0

  •96•117•313•4•Updated May 19, 2025May 19, 2025

• docker

  Public
  Dockerfiles and docker-compose for MOLGENIS

  Dockerfile

  •

  GNU Lesser General Public License v3.0

  •19•3•5•1•Updated May 19, 2025May 19, 2025