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    30 repositories

    • FRED_whitelists

      Public
      Python
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • SC-Framework

      Public
      A framework for single cell analysis
      Python
      •1•3•0•0•Updated Jul 7, 2025Jul 7, 2025

    • TF-COMB

      Public
      Transcription Factor Co-Occurrence using Market Basket analysis
      Python
      •
      MIT License
      •1•13•14•0•Updated Jul 7, 2025Jul 7, 2025

    • TOBIAS

      Public
      Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
      bioinformaticsatac-seqfootprinting
      Python
      •
      MIT License
      •41•216•1•0•Updated Jun 26, 2025Jun 26, 2025

    • PEAKQC

      Public
      PEAK-QC: Periodicity Evaluation in ATAC-seq as Key aspect in Quality Control
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • pptreport

      Public
      A utility for automating creation of powerpoint presentations
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • NucleoDetective

      Public
      A tool for the detection and analysis of nucleosomes from ATACseq data
      0•0•0•0•Updated May 21, 2025May 21, 2025

    • scanpro

      Public
      A modular tool for proportion analysis in single-cell sequencing data
      Jupyter Notebook
      •
      MIT License
      •1•22•0•0•Updated May 15, 2025May 15, 2025

    • Code_Tarasco_et_al_2025_danioheart

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 12, 2025May 12, 2025

    • TOBIAS_snakemake

      Public
      Snakemake pipeline for running TOBIAS analysis
      Python
      •
      MIT License
      •4•7•2•0•Updated Apr 28, 2025Apr 28, 2025

    • Code_Jafari_et_al_2024_cteph_rv_reverse_remodeling

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Mar 5, 2025Mar 5, 2025

    • Code_Jin_et_al_2024_Atherosclerosis_PKN1

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • denis

      Public
      framework for de novo motif generation on ATAC-seq
      Python
      •
      MIT License
      •2•4•2•0•Updated Nov 12, 2024Nov 12, 2024

    • Code_Li_et_al_2024_sEH_monocytes

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • biodaten23-24-scATAC-clustering

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • UROPA

      Public
      Universal RObust Peak Annotator
      Python
      •
      MIT License
      •6•16•5•0•Updated Dec 19, 2023Dec 19, 2023

    • FRED

      Public
      Python
      •0•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • i2dash

      Public
      i2dash: interactive and iterative dashboards.
      i2dash
      R
      •
      Other
      •3•10•2•1•Updated Sep 5, 2023Sep 5, 2023

    • Li_et_al_2023_heart_regeneration

      Public
      Inhibition of fatty acid oxidation stimulates KDM5-mediated H3K4me3 demethylation and enables heart regeneration in adult mice
      R
      •
      MIT License
      •0•1•0•0•Updated Jun 9, 2023Jun 9, 2023

    • Datenanalyse_2022_23

      Public
      This repository contains a pipeline for analyzing data from scATAC-seq.
      pipelineanalysisscatac-seq
      Jupyter Notebook
      •0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • Wu_et_al_2022_Spurious_transcription

      Public
      Shell
      •
      MIT License
      •0•1•0•0•Updated Oct 25, 2022Oct 25, 2022

    • Datenanalyse-2021

      Public
      Jupyter Notebook
      •0•2•1•0•Updated Mar 29, 2022Mar 29, 2022

    • multicrispr

      Public
      HTML
      •0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • wilson

      Public
      WIlsON: Webbased Interactive Omics visualizatioN. This is a mirror of
      R
      •
      Other
      •1•2•0•0•Updated Nov 15, 2021Nov 15, 2021

    • jlu-bda-2020

      Public
      Code repository for the JLU practical in Biodatenanalyse in winter 2020/2021
      Python
      •
      MIT License
      •1•0•2•0•Updated Apr 16, 2021Apr 16, 2021

    • i2dash.scrnaseq

      Public
      Components for an i2dashboard from i2dash, related to data from single-cell RNA-sequencing
      i2dash
      R
      •
      Other
      •0•1•0•0•Updated Nov 6, 2020Nov 6, 2020

    • cardiac-progenitors

      Public
      Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement
      R
      •3•9•0•0•Updated Oct 20, 2020Oct 20, 2020

    • possible-eureka

      Public
      Loosolabs git playground
      Python
      •7•0•0•2•Updated May 21, 2019May 21, 2019

    • conda-buildkite-plugin

      Public
      Run commands in conda environments
      Shell
      •
      MIT License
      •3•1•0•0•Updated Feb 20, 2019Feb 20, 2019

    • mirpipe

      Public
      Source code for the MIRPIPE miRNA detection and quantification pipeline.
      Perl
      •
      Other
      •1•2•1•0•Updated Oct 14, 2014Oct 14, 2014
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