Repositories list

• drevalpy

  Public
  DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

  bioinformaticsmachinedrug-response-prediction

  Python

  •

  MIT License

  •2•27•13•1•Updated Oct 17, 2025Oct 17, 2025

• FOXP3-FLAG-analysis

  Public
  0•1•0•0•Updated Oct 7, 2025Oct 7, 2025

• cyanus

  Public
  A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App

  R

  •

  GNU General Public License v3.0

  •2•5•8•0•Updated Oct 7, 2025Oct 7, 2025

• nfcore-tfactivity-report

  Public
  Final report for the nf-core/tfactivity

  Astro

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• IHEC-AS

  Public
  R

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Sep 29, 2025Sep 29, 2025

• PRONE

  Public
  R Package for preprocessing, normalizing, and analyzing proteomics data

  evaluationdata-analysisproteomics+ 1normalization

  R

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Sep 25, 2025Sep 25, 2025

• DIGGER

  Public
  Exploring Isoform-specific interactions

  visualizationdjango-applicationwebtool+ 2protein-protein-interactionbioinformatics-tool

  Python

  •

  GNU General Public License v3.0

  •2•11•3•2•Updated Sep 16, 2025Sep 16, 2025

• SPONGE-web-frontend

  Public
  TypeScript

  •0•1•0•3•Updated Sep 12, 2025Sep 12, 2025

• SPONGE-web-backend

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•0•6•Updated Sep 9, 2025Sep 9, 2025

• platlas

  Public
  A platelet atlas

  R

  •

  GNU General Public License v3.0

  •0•1•27•0•Updated Aug 21, 2025Aug 21, 2025

• DiReG

  Public
  R

  •0•0•0•0•Updated Aug 17, 2025Aug 17, 2025

• RPs_MPs

  Public
  HTML

  •0•2•0•0•Updated Aug 13, 2025Aug 13, 2025

• RMR_prediction

  Public
  HTML

  •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• drugstone_backend

  Public
  This is the backend service repository that makes Drugst.One work. Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 17, 2025Jul 17, 2025

• NEASE

  Public
  A network-based approach for exon set enrichment

  rna-seqstatisticsalternative-splicing+ 4network-analysistranscriptomicsprotein-protein-interactionbioinformatics-tool

  Python

  •

  GNU General Public License v3.0

  •2•15•0•0•Updated Jul 16, 2025Jul 16, 2025

• Dimmer

  Public
  Java

  •

  GNU General Public License v3.0

  •1•1•0•3•Updated Jul 12, 2025Jul 12, 2025

• drugstone_plugin

  Public
  Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.

  HTML

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• PRONE.Evaluation

  Public
  R

  •0•2•0•0•Updated May 26, 2025May 26, 2025

• preprocess_drp_data

  Public
  This project contains all steps necessary to get from the original data repositories of CCLE/GDSC/… to usable input files.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated May 21, 2025May 21, 2025

• spongeWebPy

  Public
  Python

  •0•1•0•3•Updated May 15, 2025May 15, 2025

• PRONE.Shiny

  Public
  Code of the R Shiny App of the PRONE R Package.

  shinyappsnormalizationproteomics-data-analysis

  R

  •

  GNU General Public License v3.0

  •1•2•3•0•Updated May 8, 2025May 8, 2025

• namco

  Public
  R

  •

  GNU General Public License v3.0

  •3•11•25•0•Updated Apr 17, 2025Apr 17, 2025

• PPI_prediction_study

  Public
  Python

  •

  MIT License

  •1•9•1•0•Updated Mar 21, 2025Mar 21, 2025

• teff-treg-satb1-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• Tangram_Refinement_Strategies

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•8•1•0•Updated Feb 12, 2025Feb 12, 2025

• NeEDL

  Public
  C++

  •

  GNU General Public License v3.0

  •1•6•5•3•Updated Jan 13, 2025Jan 13, 2025

• SPONGE-web-R

  Public
  R

  •0•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• DysRegNet_package

  Public
  Inferring patient-specific regulatory alterations

  bioinformaticsrna-seqstatistics+ 4systems-biologytranscriptomicslinear-modelsgene-regulatory-network

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated Dec 6, 2024Dec 6, 2024

• easyLiftover

  Public
  This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.

  bioinformaticsbioinformatics-tool

  Python

  •

  GNU General Public License v3.0

  •0•1•2•2•Updated Nov 22, 2024Nov 22, 2024

• polyester

  Public
  R

  •2•1•0•0•Updated Oct 8, 2024Oct 8, 2024