Repositories list

• getwilds.github.io

  Public
  WILDS Website

  Lua

  •

  Creative Commons Zero v1.0 Universal

  •0•0•4•1•Updated Oct 17, 2025Oct 17, 2025

• registry

  Public
  WILDS Repo Registry

  Python

  •0•0•1•0•Updated Oct 17, 2025Oct 17, 2025

• wilds-wdl-library

  Public
  Collection of bioinformatics-related WDL workflow for use in WILDS

  WDL

  •

  MIT License

  •1•0•15•3•Updated Oct 17, 2025Oct 17, 2025

• wilds-docker-library

  Public
  Collection of Docker images for use in WILDS bioinformatics workflows

  containerswilds-docker

  Dockerfile

  •

  MIT License

  •4•2•7•2•Updated Oct 16, 2025Oct 16, 2025

• wdlparse

  Public
  Parse WDLs

  Rust

  •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

• proofr

  Public
  Client for the PROOF API

  r-packagewilds-r

  R

  •

  Other

  •11•1•1•0•Updated Sep 24, 2025Sep 24, 2025

• bs-wilds

  Public
  Custom WILDS Bootstrap theme

  HTML

  •

  Other

  •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• sprocket-wdl-tutorial

  Public
  Tutorial WDL's for 2025 OCDO Summer Hybrid Coworking Day

  WDL

  •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• dasl-quarto

  Public
  Quarto template for FHCC DaSL HTML report

  HTML

  •0•0•0•2•Updated Jun 5, 2025Jun 5, 2025

• ww-star-deseq2

  Public
  WILDS WDL workflow that executes STAR+DESeq2 on RNAseq data

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •0•0•2•0•Updated May 29, 2025May 29, 2025

• ww-saturation

  Public
  Self-contained WDL workflow that performs saturation mutagenesis analysis

  WDL

  •

  MIT License

  •2•0•0•0•Updated Apr 14, 2025Apr 14, 2025

• sixtyfour

  Public
  🚚 AWS for Data Scientists

  awsraws-billing+ 3rstatsr-pkgwilds-r

  R

  •

  Other

  •2•22•29•2•Updated Apr 10, 2025Apr 10, 2025

• rules

  Public
  WILDS Rules

  Python

  •0•0•0•0•Updated Mar 22, 2025Mar 22, 2025

• guide

  Public
  WILDS Dev Guide

  documentation

  Lua

  •

  Creative Commons Zero v1.0 Universal

  •1•3•9•1•Updated Mar 11, 2025Mar 11, 2025

• .github

  Public
  0•0•1•0•Updated Mar 3, 2025Mar 3, 2025

• ww-salmon

  Public
  Self-contained WDL workflow that uses the Salmon RNA-seq computational tool.

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• rls

  Public
  Row Level Security Functions for PostgreSQL and Redshift

  postgresqlrstatsredshift+ 2row-level-securitywilds-r

  R

  •

  Other

  •0•2•6•2•Updated Feb 4, 2025Feb 4, 2025

• makefiles

  Public
  Makefile templates for WILDS projects

  utilities

  Makefile

  •0•0•1•0•Updated Feb 3, 2025Feb 3, 2025

• oncarto

  Public
  🗺 A Map Room

  R

  •

  Other

  •0•2•4•0•Updated Jan 17, 2025Jan 17, 2025

• ww-shapemapper

  Public
  Self-contained WDL workflow that uses Shapemapper

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• proof

  Public
  MIT License

  •0•0•25•0•Updated Dec 30, 2024Dec 30, 2024

• ww-demo-workflows

  Public
  A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •1•1•0•1•Updated Dec 16, 2024Dec 16, 2024

• ww-sourmash

  Public
  Self-contained WDL workflow that uses Sourmash to perform similarity searches between sequence files.

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• personas

  Public
  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Oct 7, 2024Oct 7, 2024

• badges

  Public
  WILDS Badges

  utilities

  HTML

  •0•0•1•0•Updated Sep 25, 2024Sep 25, 2024

• cancerprof

  Public
  API Client for State Cancer Profiles

  wilds-r

  R

  •

  Other

  •2•2•17•1•Updated Sep 25, 2024Sep 25, 2024

• rcromwell

  Public
  R client for interacting with Cromwell with WDL workflows

  workflowrworkflow-engine+ 4rstatsr-packageworkflow-managementwilds-r

  R

  •

  Other

  •2•4•8•0•Updated Sep 17, 2024Sep 17, 2024

• ww-cell-ranger

  Public
  A basic starting point for a cell ranger workflow

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• ww-fastq-to-cram

  Public
  Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• ww-vc-trio

  Public
  Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them

  wdl-workflowwilds-wdl

  WDL

  •

  MIT License

  •2•0•0•0•Updated Jul 8, 2024Jul 8, 2024